framingham 0.0

data/.gitignore

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+*~
+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in framingham.gemspec
+gemspec

data/LICENSE.txt

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+Copyright (c) 2013
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Framingham
+
+Ruby gem to implement Framingham Heart Study calculators  
+http://www.framinghamheartstudy.org
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'framingham'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install framingham
+
+# Module: Framingham::Heartdisease#
+        `Defined in: framingham/heartdisease.rb`
+
+## Usage
+
+---
+### Public Class Methods ###
+![](http://ruby-doc.org/images/brick.png) ::eval(options) → Float or Error String
+
+        Evaluates Framingham::Heartdisease score
+  
+###   Parameters ###
+
+options(<code>Hash&lt;<span style="color:purple">​Symbol</span>, <span style="color:cadetblue">Object</span>&gt;</span></code>) (defaults to: `{}`) — initial context configuration
+
+```ruby
+age:                      30..74  
+blood_pressure:           90..200  
+blood_pressure_treatment: true | false  
+body_mass_index:          15..50  
+diabetes:                 true | false  
+gender:                   :male | :female  
+smoker:                   true | false  
+```
+
+## Contributing
+
+1. Fork it
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request

data/Rakefile

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+require "bundler/gem_tasks"

data/framingham/heartdisease.rb

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+module Framingham::Heartdisease extend Framingham, self
+
+def eval options = {}
+  begin
+    #initialize
+    options = NORMAL.merge options
+    @age = options[:age]
+    @blood_pressure = options[:blood_pressure]
+    @blood_pressure_treatment = options[:blood_pressure_treatment] ? :treated : :untreated
+    @body_mass_index = options[:body_mass_index]
+    @gender = options[:gender]
+    @diabetes = to_i options[:diabetes]
+    @smoker = to_i options[:smoker]
+  rescue => exception
+    abort "\033[31merror: " + exception.message + "\033[0m"
+  else
+    #calculate
+    start_beta = BETA_ZERO[@gender] + Math.log(@age) * AGE[@gender]
+    risk = 1 - POWER_BASE[@gender] ** Math.exp(
+      start_beta +
+      Math.log(@blood_pressure) * BLOOD_PRESSURE[@gender][@blood_pressure_treatment] +
+      Math.log(@body_mass_index) * BODY_MASS_INDEX[@gender] +
+      @diabetes * DIABETES[@gender] +
+      @smoker * SMOKER[@gender]
+    )
+    normal = 1 - POWER_BASE[@gender] ** Math.exp(
+      start_beta +
+      Math.log(NORMAL[:blood_pressure]) * BLOOD_PRESSURE[@gender][:untreated] +
+      Math.log(NORMAL[:body_mass_index]) * BODY_MASS_INDEX[@gender]
+    )
+    optimal = 1 - POWER_BASE[@gender] ** Math.exp(
+      start_beta +
+      Math.log(OPTIMAL[:blood_pressure]) * BLOOD_PRESSURE[@gender][:untreated] +
+      Math.log(OPTIMAL[:body_mass_index]) * BODY_MASS_INDEX[@gender]
+    )
+    age_range = 10..86
+    age = 0
+    heart_age = lambda{
+      while (age_range.max - age_range.min) > 0.2 do
+        age = (age_range.max + age_range.min) / 2.0
+        test_risk = 1 - POWER_BASE[@gender] ** Math.exp(
+          BETA_ZERO[@gender] + Math.log(age) * AGE[@gender] +
+          Math.log(NORMAL[:blood_pressure]) * BLOOD_PRESSURE[@gender][:untreated] +
+          Math.log(NORMAL[:body_mass_index]) * BODY_MASS_INDEX[@gender]
+        )
+        age_range = test_risk < risk ? age..age_range.max : age_range = age_range.min..age
+      end
+      age
+    }.call
+    {
+      heart_age: heart_age,
+      risk:      risk,
+      normal:    normal,
+      optimal:   optimal
+    }
+  end
+end
+
+def pretty _
+  result = eval _
+  puts "Heart Age: " + result[:heart_age].to_i.to_s
+  puts "Risk:      " + "%4.1f%%" % (result[:risk] * 100)
+  puts "Normal:    " + "%4.1f%%" % (result[:normal] * 100)
+  puts "Optimal:   " + "%4.1f%%" % (result[:optimal] * 100)
+end
+
+def help
+  "Evaluate 10 year heart disease risk"
+end
+
+protected
+
+$, = ", " #default join
+
+NORMAL = { #default options
+  age:                      30,
+  blood_pressure:           125,
+  blood_pressure_treatment: false,
+  body_mass_index:          22.5,
+  diabetes:                 false,
+  gender:                  :female,
+  smoker:                   false
+} unless defined? NORMAL
+
+OPTIMAL = NORMAL.merge({
+  blood_pressure:           110,
+  body_mass_index:          22
+}) unless defined? OPTIMAL
+
+AGE_RANGE = (30..79) unless defined? AGE_RANGE
+
+BLOOD_PRESSURE_RANGE = (90..200) unless defined? BLOOD_PRESSURE_RANGE
+
+BMI_RANGE = (15..50) unless defined? BMI_RANGE
+
+GENDERS = [
+  :male,
+  :female
+] unless defined? GENDERS
+
+ERRORS = {
+  age:              "age must be in range: " + AGE_RANGE.to_s,
+  blood_pressure:   "blood pressure must be in range: " + BLOOD_PRESSURE_RANGE.to_s,
+  bmi:              "bmi must be in range: " + BMI_RANGE.to_s,
+  gender:           "invalid gender, options: " + GENDERS.join,
+} unless defined? ERRORS
+
+BETA_ZERO = {
+  male:   -23.9388,
+  female: -26.0145
+} unless defined? BETA_ZERO
+
+POWER_BASE = {
+  male:   0.88431,
+  female: 0.94833
+} unless defined? POWER_BASE
+
+AGE = {
+  male:   3.11296,
+  female: 2.72107
+} unless defined? AGE
+
+BLOOD_PRESSURE = {
+  male:{
+    treated:   1.92672,
+    untreated: 1.85508
+  },
+  female:{
+    treated:   2.88267,
+    untreated: 2.81291
+  }
+} unless defined? BLOOD_PRESSURE
+
+BODY_MASS_INDEX = {
+  male:   0.79277,
+  female: 0.51125
+} unless defined? BODY_MASS_INDEX
+
+DIABETES = {
+  male:   0.5316,
+  female: 0.77763
+} unless defined? DIABETES
+
+SMOKER = {
+  male:   0.70953,
+  female: 0.61868
+} unless defined? SMOKER
+
+end
+

data/framingham/version.rb

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+module Framingham
+  VERSION = "0.0" unless defined? VERSION
+end

data/framingham.gemspec

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+lib = File.expand_path('./framingham')
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+$LOAD_PATH << lib
+
+require 'version'
+
+Gem::Specification.new{ |_|
+  _.name          = "framingham"
+  _.version       = Framingham::VERSION
+  _.author        = "3PoundHealth"
+  _.summary       = "Gem to implement Framingham Heart Study calculators"
+  _.license       = "MIT"
+  _.files         = `git ls-files`.split($/)
+  _.executables   = _.files.grep(%r{^/}) { |f| File.basename(f) }
+  _.test_files    = _.files.grep(%r{^(test|spec|features)/})
+  _.require_path  = "."
+  _.add_development_dependency "bundler", "~> 1.3"
+  _.add_development_dependency "rake"
+}

data/framingham.rb

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+#!/usr/bin/ruby
+load 'framingham/version.rb'
+load 'framingham/heartdisease.rb'
+
+module Framingham extend self
+
+def help
+  "Framingham display help info..."
+end
+
+def version
+  "version: " + VERSION
+end
+
+protected
+
+def to_i value
+  (value.eql? true or value.to_s == "true" or (
+    value.to_f != 0 if value.respond_to? 'to_f'
+  )) ? 1 : 0
+end
+
+end
+
+puts self.eval ARGV[0].to_s if ARGV.length !=0
+

metadata

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+--- !ruby/object:Gem::Specification
+name: framingham
+version: !ruby/object:Gem::Version
+  version: '0.0'
+  prerelease: 
+platform: ruby
+authors:
+- 3PoundHealth
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-07-10 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 
+email: 
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- framingham.gemspec
+- framingham.rb
+- framingham/heartdisease.rb
+- framingham/version.rb
+homepage: 
+licenses:
+- MIT
+post_install_message: 
+rdoc_options: []
+require_paths:
+- .
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 1.8.23
+signing_key: 
+specification_version: 3
+summary: Gem to implement Framingham Heart Study calculators
+test_files: []