fixi 0.0.2 → 0.1.0
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- data/.gitignore +1 -0
- data/LICENSE +203 -0
- data/README.md +170 -0
- data/Rakefile +8 -0
- data/bin/fixi +15 -8
- data/fixi.gemspec +3 -4
- data/lib/fixi/command/add.rb +5 -2
- data/lib/fixi/command/bag.rb +94 -0
- data/lib/fixi/command/check.rb +17 -4
- data/lib/fixi/command/commit.rb +5 -2
- data/lib/fixi/command/info.rb +5 -2
- data/lib/fixi/command/init.rb +4 -0
- data/lib/fixi/command/ls.rb +5 -2
- data/lib/fixi/command/rm.rb +5 -2
- data/lib/fixi/command/sum.rb +5 -1
- data/lib/fixi/command/unbag.rb +124 -0
- data/lib/fixi/command.rb +4 -3
- data/lib/fixi/index.rb +24 -18
- data/lib/fixi/version.rb +1 -1
- data/lib/fixi.rb +12 -0
- data/spec/lib/fixi/command/init_spec.rb +29 -0
- data/spec/lib/fixi/patch/string_pack_spec.rb +15 -0
- data/spec/lib/fixi_spec.rb +47 -0
- data/spec/spec_helper.rb +27 -0
- metadata +41 -9
- data/README +0 -19
data/.gitignore
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data/README.md
ADDED
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# Overview
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Fixi is a command-line utility, written in Ruby, that indexes, verifies, and
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updates checksum information for collections of files.
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Tracking fixity is an important part of any digital preservation strategy,
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and fixi aims to help with that in as unobtrusive a manner as possible.
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## Features
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* Works with any pre-existing directory layout scheme.
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* Keeps the index in a single ".fixi" directory at the root of the collection
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* Supports regular expression-based includes and excludes
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* Supports any combination of md5, sha1, sha256, sha384, and sha512
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* Supports shallow (fast) and deep (checksum-based) fixity checking
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* Support export and import of BagIt bags
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* Supports fast lookups of files by checksum
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# Installation
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Releases of Fixi are published to rubygems.org, so you can install them the
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usual way:
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[sudo] gem install fixi
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Or you can install from source via:
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[sudo] rake install
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*NOTE: Fixi uses sqlite3, which will need to be built if it's not already on
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your system.*
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If you are using Ubuntu and you get an error about building sqlite, you may
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need to install both the ruby1.9.1-dev and the libsqlite3-dev packages:
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[sudo] apt-get install ruby1.9.1-dev libsqlite3-dev
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Similar steps may be necessary for other distros and operating systems.
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# General Usage
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fixi [--version] [--help] <command> [<options>] [<args>]
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## Global Options:
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--version, -v: Display the version and exit.
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--help, -h: Show general or command-specific help
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See below for command-specific usage and options.
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# add: Add new files to the index
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## Usage:
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fixi add [<options>] [<dir> | <file>]
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## Options:
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--absolute, -a: Show absolute paths. By default, paths are reported
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relative to the index root.
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--dry-run, -d: Don't do anything; just report what would be done
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# bag: Export files as a new BagIt bag
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## Usage:
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fixi bag [<options>] <input-dir> <output-dir>
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## Where:
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input-dir is an indexed directory whose content should be exported.
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output-dir is the base directory of the bag to be created.
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## Options:
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--algorithms, -l <s>: Checksum algorithm(s) to use for the bag. This is a
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comma-separated list, which may include md5, sha1,
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sha256, sha384, sha512, and must be a subset of the
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indexed algorithms. If unspecified, manifests will be
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created for all indexed algorithms.
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# check: Verify the fixity of files in the index
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## Usage:
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fixi check [<options>] [<dir> | <file>]
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## Options:
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--absolute, -a: Show absolute paths. By default, paths are reported
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relative to the index root.
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--shallow, -s: Do shallow comparisons when determining which files have
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changed. If specified, only file sizes and mtimes will be
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used. By default, checksums will also be computed and
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compared if necessary.
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--verbose, -v: For modified files, show which attribute changed. By
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default, only the path is shown.
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# commit: Commit modified files to the index
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## Usage:
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fixi commit [<options>] [<dir> | <file>]
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## Options:
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--absolute, -a: Show absolute paths. By default, paths are reported
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relative to the index root.
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--dry-run, -d: Don't do anything; just report what would be done
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--shallow, -s: Do shallow comparisons when determining which files have
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changed. If specified, only file sizes and mtimes will be
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used. By default, checksums will also be computed and
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compared if necessary.
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--verbose, -v: For modified files, show which attribute changed. By
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default, only the path is shown.
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# info: Display a summary of the index
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## Usage:
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fixi info [path]
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# init: Create a new, empty index
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## Usage:
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fixi init [<options>] [<dir>]
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## Options:
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--algorithms, -l <s>: Checksum algorithm(s) to use for the index. This is
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a comma-separated list, which may include md5, sha1,
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sha256, sha384, and sha512. (Default: sha256)
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# ls: List contents of the index
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## Usage:
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fixi ls [<options>] [<dir> | <file>]
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## Options:
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--absolute, -a: Show absolute paths. By default, paths are reported
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relative to the index root.
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--json, -j: Like --verbose, but outputs the result as a json array.
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--md5 <s>: Restrict list to files with the given md5 checksum
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|
+
--sha1 <s>: Restrict list to files with the given sha1 checksum
|
132
|
+
--sha256 <s>: Restrict list to files with the given sha256 checksum
|
133
|
+
--sha384 <s>: Restrict list to files with the given sha384 checksum
|
134
|
+
--sha512 <s>: Restrict list to files with the given sha512 checksum
|
135
|
+
--verbose, -v: Include all information known about each file. By default,
|
136
|
+
only paths will be listed.
|
137
|
+
|
138
|
+
# rm: Delete old files from the index
|
139
|
+
|
140
|
+
## Usage:
|
141
|
+
fixi rm [<options>] [<dir> | <file>]
|
142
|
+
|
143
|
+
## Options:
|
144
|
+
--absolute, -a: Show absolute paths. By default, paths are reported
|
145
|
+
relative to the index root.
|
146
|
+
--dry-run, -d: Don't do anything; just report what would be done
|
147
|
+
|
148
|
+
# sum: Calculate checksum(s) of a file
|
149
|
+
|
150
|
+
## Usage:
|
151
|
+
fixi sum [<options>] <file>
|
152
|
+
|
153
|
+
## Options:
|
154
|
+
--algorithms, -l <s>: Checksum algorithm(s) to use. This is a
|
155
|
+
comma-separated list, which may include md5, sha1,
|
156
|
+
sha256, sha384, and sha512. At least one must be
|
157
|
+
specified.
|
158
|
+
|
159
|
+
# unbag: Import files from a BagIt bag
|
160
|
+
|
161
|
+
## Usage:
|
162
|
+
fixi unbag [<options>] <input-dir> <output-dir>
|
163
|
+
|
164
|
+
## Where:
|
165
|
+
input-dir is the base directory of the bag.
|
166
|
+
output-dir is the directory in which to import it.
|
167
|
+
|
168
|
+
## Options:
|
169
|
+
--absolute, -a: Show absolute paths. By default, paths are reported
|
170
|
+
relative to the index root.
|
data/Rakefile
CHANGED
data/bin/fixi
CHANGED
@@ -1,20 +1,17 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
2
|
|
3
3
|
require 'rubygems'
|
4
|
-
require 'trollop'
|
5
4
|
require 'fixi'
|
6
5
|
|
7
|
-
|
8
|
-
|
9
|
-
name = ARGV.shift
|
10
|
-
if name.nil?
|
11
|
-
puts <<-EOS
|
6
|
+
def show_usage_and_exit
|
7
|
+
puts <<-EOS
|
12
8
|
usage: fixi [--version] [--help] <command> [<options>] [path]
|
13
9
|
|
14
10
|
All commands are scoped to the current directory or the given path, if specified.
|
15
11
|
|
16
12
|
Commands:
|
17
13
|
add: #{Fixi::Command::Add.synopsis}
|
14
|
+
bag: #{Fixi::Command::Bag.synopsis}
|
18
15
|
check: #{Fixi::Command::Check.synopsis}
|
19
16
|
commit: #{Fixi::Command::Commit.synopsis}
|
20
17
|
info: #{Fixi::Command::Info.synopsis}
|
@@ -22,16 +19,26 @@ Commands:
|
|
22
19
|
ls: #{Fixi::Command::Ls.synopsis}
|
23
20
|
rm: #{Fixi::Command::Rm.synopsis}
|
24
21
|
sum: #{Fixi::Command::Sum.synopsis}
|
22
|
+
unbag: #{Fixi::Command::Unbag.synopsis}
|
25
23
|
|
26
24
|
See 'fixi help <command>' for more information on a specific command.
|
27
|
-
|
28
|
-
|
25
|
+
EOS
|
26
|
+
exit 0
|
27
|
+
end
|
28
|
+
|
29
|
+
name = ARGV.shift
|
30
|
+
if name == "--help" || name == "-h" || name == "help"
|
31
|
+
name = ARGV.shift
|
32
|
+
if name.nil?
|
33
|
+
show_usage_and_exit
|
29
34
|
else
|
30
35
|
ARGV.insert(0, "--help")
|
31
36
|
end
|
32
37
|
elsif name == "--version" || name == "-v"
|
33
38
|
puts "fixi version #{Fixi::VERSION}"
|
34
39
|
exit 0
|
40
|
+
elsif name.nil?
|
41
|
+
show_usage_and_exit
|
35
42
|
end
|
36
43
|
|
37
44
|
command = Fixi::command name
|
data/fixi.gemspec
CHANGED
@@ -18,10 +18,9 @@ Gem::Specification.new do |s|
|
|
18
18
|
s.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
|
19
19
|
s.require_paths = ["lib"]
|
20
20
|
|
21
|
-
|
22
|
-
|
23
|
-
# s.add_runtime_dependency "rest-client"
|
21
|
+
s.add_development_dependency "rspec"
|
22
|
+
s.add_development_dependency "simplecov"
|
24
23
|
|
25
24
|
s.add_runtime_dependency "trollop"
|
26
|
-
s.add_runtime_dependency "sqlite3
|
25
|
+
s.add_runtime_dependency "sqlite3"
|
27
26
|
end
|
data/lib/fixi/command/add.rb
CHANGED
@@ -6,9 +6,12 @@ class Fixi::Command::Add
|
|
6
6
|
"Add new files to the index"
|
7
7
|
end
|
8
8
|
|
9
|
+
def self.arghelp
|
10
|
+
"[<dir>|<file>]"
|
11
|
+
end
|
12
|
+
|
9
13
|
def self.details
|
10
|
-
"
|
11
|
-
if specified.".pack
|
14
|
+
"If no argument is given, the current directory ('.') is assumed."
|
12
15
|
end
|
13
16
|
|
14
17
|
def execute args
|
@@ -0,0 +1,94 @@
|
|
1
|
+
require 'trollop'
|
2
|
+
require 'fixi/index'
|
3
|
+
require 'set'
|
4
|
+
require 'fileutils'
|
5
|
+
|
6
|
+
class Fixi::Command::Bag
|
7
|
+
def self.synopsis
|
8
|
+
"Export files as a new BagIt bag"
|
9
|
+
end
|
10
|
+
|
11
|
+
def self.arghelp
|
12
|
+
"<input-dir> <output-dir>"
|
13
|
+
end
|
14
|
+
|
15
|
+
def self.details
|
16
|
+
"Where:\n input-dir is an indexed directory whose content should be exported.\n" +
|
17
|
+
" output-dir is the base directory of the bag to be created."
|
18
|
+
end
|
19
|
+
|
20
|
+
def execute args
|
21
|
+
opts = Trollop::options args do
|
22
|
+
banner Fixi::Command.banner "bag"
|
23
|
+
opt :algorithms, "Checksum algorithm(s) to use for the bag. This is
|
24
|
+
a comma-separated list, which may include md5, sha1, sha256, sha384,
|
25
|
+
sha512, and must be a subset of the indexed algorithms. If unspecified,
|
26
|
+
manifests will be created for all indexed algorithms.".pack,
|
27
|
+
:short => 'l', :type => :string
|
28
|
+
end
|
29
|
+
|
30
|
+
raise "Must specify input directory." unless args[0]
|
31
|
+
raise "Must specify output directory." unless args[1]
|
32
|
+
raise "Output directory already exists." if File.exists?(args[1])
|
33
|
+
|
34
|
+
input_dir = File.expand_path(args[0])
|
35
|
+
output_dir = File.expand_path(args[1])
|
36
|
+
|
37
|
+
index = Fixi::Index.new(input_dir)
|
38
|
+
Dir.mkdir(output_dir)
|
39
|
+
|
40
|
+
# if algorithms specified, must be a subset of those indexed
|
41
|
+
opts[:algorithms] ||= index.algorithms
|
42
|
+
set = Set.new(index.algorithms.split(","))
|
43
|
+
subset = Set.new(opts[:algorithms].split(","))
|
44
|
+
raise "Specified algorithm(s) must be a subset of #{index.algorithms}" unless subset.subset?(set)
|
45
|
+
|
46
|
+
manifiles = {}
|
47
|
+
|
48
|
+
begin
|
49
|
+
# write bag declaration
|
50
|
+
file = File.new(File.join(args[1], "bagit.txt"), "w")
|
51
|
+
file.puts("BagIt-Version: 0.97")
|
52
|
+
file.puts("Tag-File-Character-Encoding: UTF-8")
|
53
|
+
file.close
|
54
|
+
|
55
|
+
# open manifest files for writing
|
56
|
+
opts[:algorithms].split(",").each do |alg|
|
57
|
+
filename = File.join(args[1], "manifest-#{alg}.txt")
|
58
|
+
manifiles[alg] = File.new(filename, "w")
|
59
|
+
end
|
60
|
+
|
61
|
+
# copy all files, preserving attributes
|
62
|
+
index.each(input_dir) do |hash|
|
63
|
+
relpath = hash['relpath']
|
64
|
+
abspath = index.rootpath + '/' + relpath
|
65
|
+
if index.file_in_scope(relpath) && File.exists?(abspath)
|
66
|
+
bagrelpath = "data" + abspath[input_dir.length..-1]
|
67
|
+
destpath = args[1] + "/" + bagrelpath
|
68
|
+
manifiles.each do |alg, file|
|
69
|
+
file.puts("#{hash[alg]} #{bagrelpath}")
|
70
|
+
end
|
71
|
+
begin
|
72
|
+
FileUtils.cp(abspath, destpath, :preserve => true)
|
73
|
+
rescue
|
74
|
+
FileUtils.mkdir_p(File.dirname(destpath))
|
75
|
+
FileUtils.cp(abspath, destpath, :preserve => true)
|
76
|
+
end
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
data_dir = output_dir + "/data"
|
81
|
+
|
82
|
+
# revisit all dirs under data/, copying orig dir metadata
|
83
|
+
Find.find(data_dir) do |dir|
|
84
|
+
if File.directory?(dir) && dir != data_dir
|
85
|
+
orig_dir = input_dir + dir[data_dir.length..-1]
|
86
|
+
Fixi::set_metadata(dir, File.stat(orig_dir))
|
87
|
+
end
|
88
|
+
end
|
89
|
+
ensure
|
90
|
+
manifiles.each_value { |file| file.close }
|
91
|
+
end
|
92
|
+
end
|
93
|
+
|
94
|
+
end
|
data/lib/fixi/command/check.rb
CHANGED
@@ -5,9 +5,12 @@ class Fixi::Command::Check
|
|
5
5
|
"Verify the fixity of files in the index"
|
6
6
|
end
|
7
7
|
|
8
|
+
def self.arghelp
|
9
|
+
"[<dir>|<file>]"
|
10
|
+
end
|
11
|
+
|
8
12
|
def self.details
|
9
|
-
"
|
10
|
-
if specified.".pack
|
13
|
+
"If no argument is given, the current directory ('.') is assumed."
|
11
14
|
end
|
12
15
|
|
13
16
|
def execute args
|
@@ -15,6 +18,10 @@ class Fixi::Command::Check
|
|
15
18
|
banner Fixi::Command.banner "check"
|
16
19
|
opt :absolute, "Show absolute paths. By default, paths are reported
|
17
20
|
relative to the index root.".pack
|
21
|
+
opt :algorithms, "Checksum algorithm(s) to use if shallow isn't specified.
|
22
|
+
This is a comma-separated list, which may include md5, sha1, sha256, sha384,
|
23
|
+
sha512, and must be a subset of the indexed algorithms. If unspecified,
|
24
|
+
defaults to all indexed algorithms.".pack, :short => 'l', :type => :string
|
18
25
|
opt :shallow, "Do shallow comparisons when determining which files have
|
19
26
|
changed. If specified, only file sizes and mtimes will be used. By
|
20
27
|
default, checksums will also be computed and compared if necessary.".pack
|
@@ -24,6 +31,12 @@ class Fixi::Command::Check
|
|
24
31
|
path = File.expand_path(args[0] || ".")
|
25
32
|
index = Fixi::Index.new(path)
|
26
33
|
|
34
|
+
# if algorithms specified, must be a subset of those indexed
|
35
|
+
opts[:algorithms] ||= index.algorithms
|
36
|
+
set = Set.new(index.algorithms.split(","))
|
37
|
+
subset = Set.new(opts[:algorithms].split(","))
|
38
|
+
raise "Specified algorithm(s) must be a subset of #{index.algorithms}" unless subset.subset?(set)
|
39
|
+
|
27
40
|
index.each(args[0]) do |hash|
|
28
41
|
relpath = hash['relpath']
|
29
42
|
abspath = index.rootpath + '/' + relpath
|
@@ -38,9 +51,9 @@ class Fixi::Command::Check
|
|
38
51
|
detail = opts[:verbose] ? "mtime=#{Time.at(mtime).utc.iso8601} " : ""
|
39
52
|
puts "M #{detail}#{opts[:absolute] ? abspath : relpath}"
|
40
53
|
elsif not opts[:shallow]
|
41
|
-
hexdigests = Fixi::hexdigests(Fixi::digests(
|
54
|
+
hexdigests = Fixi::hexdigests(Fixi::digests(opts[:algorithms]), abspath)
|
42
55
|
i = 0
|
43
|
-
|
56
|
+
opts[:algorithms].split(',').each do |algorithm|
|
44
57
|
if hexdigests[i] != hash[algorithm]
|
45
58
|
detail = opts[:verbose] ? "#{algorithm}=#{hexdigests[i]} " : ""
|
46
59
|
puts "M #{detail}#{opts[:absolute] ? abspath : relpath}"
|
data/lib/fixi/command/commit.rb
CHANGED
@@ -7,9 +7,12 @@ class Fixi::Command::Commit
|
|
7
7
|
"Commit modified files to the index"
|
8
8
|
end
|
9
9
|
|
10
|
+
def self.arghelp
|
11
|
+
"[<dir>|<file>]"
|
12
|
+
end
|
13
|
+
|
10
14
|
def self.details
|
11
|
-
"
|
12
|
-
if specified.".pack
|
15
|
+
"If no argument is given, the current directory ('.') is assumed."
|
13
16
|
end
|
14
17
|
|
15
18
|
def execute args
|
data/lib/fixi/command/info.rb
CHANGED
@@ -6,9 +6,12 @@ class Fixi::Command::Info
|
|
6
6
|
"Display a summary of the index"
|
7
7
|
end
|
8
8
|
|
9
|
+
def self.arghelp
|
10
|
+
"[<dir>]"
|
11
|
+
end
|
12
|
+
|
9
13
|
def self.details
|
10
|
-
"
|
11
|
-
if specified.".pack
|
14
|
+
"If no argument is given, the current directory ('.') is assumed."
|
12
15
|
end
|
13
16
|
|
14
17
|
def execute args
|
data/lib/fixi/command/init.rb
CHANGED
data/lib/fixi/command/ls.rb
CHANGED
@@ -6,9 +6,12 @@ class Fixi::Command::Ls
|
|
6
6
|
"List contents of the index"
|
7
7
|
end
|
8
8
|
|
9
|
+
def self.arghelp
|
10
|
+
"[<dir>|<file>]"
|
11
|
+
end
|
12
|
+
|
9
13
|
def self.details
|
10
|
-
"
|
11
|
-
if specified.".pack
|
14
|
+
"If no argument is given, the current directory ('.') is assumed."
|
12
15
|
end
|
13
16
|
|
14
17
|
def execute args
|
data/lib/fixi/command/rm.rb
CHANGED
@@ -7,9 +7,12 @@ class Fixi::Command::Rm
|
|
7
7
|
"Delete old files from the index"
|
8
8
|
end
|
9
9
|
|
10
|
+
def self.arghelp
|
11
|
+
"[<dir>|<file>]"
|
12
|
+
end
|
13
|
+
|
10
14
|
def self.details
|
11
|
-
"
|
12
|
-
if specified.".pack
|
15
|
+
"If no argument is given, the current directory ('.') is assumed."
|
13
16
|
end
|
14
17
|
|
15
18
|
def execute args
|
data/lib/fixi/command/sum.rb
CHANGED
@@ -7,8 +7,12 @@ class Fixi::Command::Sum
|
|
7
7
|
"Calculate checksum(s) of a file"
|
8
8
|
end
|
9
9
|
|
10
|
+
def self.arghelp
|
11
|
+
"<file>"
|
12
|
+
end
|
13
|
+
|
10
14
|
def self.details
|
11
|
-
|
15
|
+
"This command operates on files and does not require an index to exist."
|
12
16
|
end
|
13
17
|
|
14
18
|
def execute args
|
@@ -0,0 +1,124 @@
|
|
1
|
+
require 'trollop'
|
2
|
+
require 'fixi/index'
|
3
|
+
require 'fileutils'
|
4
|
+
|
5
|
+
class Fixi::Command::Unbag
|
6
|
+
def self.synopsis
|
7
|
+
"Import files from a BagIt bag"
|
8
|
+
end
|
9
|
+
|
10
|
+
def self.arghelp
|
11
|
+
"<input-dir> <output-dir>"
|
12
|
+
end
|
13
|
+
|
14
|
+
def self.details
|
15
|
+
"Where:\n input-dir is the base directory of the bag.\n" +
|
16
|
+
" output-dir is the directory in which to import it."
|
17
|
+
end
|
18
|
+
|
19
|
+
def execute args
|
20
|
+
opts = Trollop::options args do
|
21
|
+
banner Fixi::Command.banner "unbag"
|
22
|
+
opt :absolute, "Show absolute paths. By default, paths are reported
|
23
|
+
relative to the index root.".pack
|
24
|
+
end
|
25
|
+
|
26
|
+
# validate args and bag dir
|
27
|
+
raise "Must specify input directory." unless args[0]
|
28
|
+
raise "Must specify output directory." unless args[1]
|
29
|
+
raise "Output directory already exists." if File.exists?(args[1])
|
30
|
+
|
31
|
+
input_dir = File.expand_path(args[0])
|
32
|
+
output_dir = File.expand_path(args[1])
|
33
|
+
|
34
|
+
index = Fixi::Index.new(File.dirname(output_dir))
|
35
|
+
Dir.mkdir(output_dir)
|
36
|
+
|
37
|
+
data_dir = input_dir + "/data"
|
38
|
+
raise "No data dir found in input dir." unless File.directory?(data_dir)
|
39
|
+
|
40
|
+
# build hash of manifest algorithm => file path
|
41
|
+
manifests = {}
|
42
|
+
indexed_algs = index.algorithms.split(",")
|
43
|
+
Dir.entries(input_dir).each do |child|
|
44
|
+
if child =~ /^manifest-.*\.txt/
|
45
|
+
alg = child[9..(child.length - 5)]
|
46
|
+
if (indexed_algs.include?(alg))
|
47
|
+
manifests[alg] = input_dir + "/" + child
|
48
|
+
end
|
49
|
+
end
|
50
|
+
end
|
51
|
+
|
52
|
+
# copy all data to dest dir, subject to includes and excludes
|
53
|
+
Find.find(data_dir) do |abspath|
|
54
|
+
unless abspath == data_dir
|
55
|
+
relpath = abspath.slice(data_dir.length + 1..-1)
|
56
|
+
destpath = output_dir + "/" + relpath
|
57
|
+
if index.matches_any?(relpath, index.includes)
|
58
|
+
if index.matches_any?(relpath, index.excludes)
|
59
|
+
Find.prune
|
60
|
+
elsif not File.directory?(abspath)
|
61
|
+
begin
|
62
|
+
FileUtils.cp(abspath, destpath, :preserve => true)
|
63
|
+
rescue
|
64
|
+
FileUtils.mkdir_p(File.dirname(destpath))
|
65
|
+
FileUtils.cp(abspath, destpath, :preserve => true)
|
66
|
+
end
|
67
|
+
end
|
68
|
+
else
|
69
|
+
Find.prune unless File.directory?(abspath)
|
70
|
+
end
|
71
|
+
end
|
72
|
+
end
|
73
|
+
|
74
|
+
# revisit all dirs under output_dir, copying orig dir metadata
|
75
|
+
Find.find(output_dir) do |dir|
|
76
|
+
if File.directory?(dir) && dir != output_dir
|
77
|
+
orig_dir = data_dir + dir[output_dir.length..-1]
|
78
|
+
Fixi::set_metadata(dir, File.stat(orig_dir))
|
79
|
+
end
|
80
|
+
end
|
81
|
+
|
82
|
+
# add paths, sizes, and mtimes to db
|
83
|
+
index.find(output_dir) do |abspath|
|
84
|
+
relpath = index.relpath(abspath)
|
85
|
+
index.add(relpath, false)
|
86
|
+
end
|
87
|
+
|
88
|
+
# add manifest entries to db
|
89
|
+
manifests.each do |alg, manifest|
|
90
|
+
IO.foreach(manifest) do |line|
|
91
|
+
i = line.index(" ")
|
92
|
+
if i
|
93
|
+
digest = line[0..i-1].downcase
|
94
|
+
bagpath = line[i+6..-1].rstrip
|
95
|
+
relpath = index.relpath(output_dir + "/" + bagpath)
|
96
|
+
index.set_digest(relpath, alg, digest)
|
97
|
+
end
|
98
|
+
end
|
99
|
+
end
|
100
|
+
|
101
|
+
# for all new files, compute any required hashes and print A path/etc
|
102
|
+
algs = index.algorithms.split(",")
|
103
|
+
index.each(output_dir) do |hash|
|
104
|
+
relpath = hash['relpath']
|
105
|
+
abspath = index.rootpath + '/' + relpath
|
106
|
+
puts "A #{opts[:absolute] ? abspath : relpath}"
|
107
|
+
|
108
|
+
missing_digests = []
|
109
|
+
algs.each do |alg|
|
110
|
+
missing_digests << alg unless hash[alg]
|
111
|
+
end
|
112
|
+
if missing_digests.size > 0
|
113
|
+
digests = Fixi::digests(missing_digests.join(","))
|
114
|
+
hexdigests = Fixi::hexdigests(digests, abspath)
|
115
|
+
i = 0
|
116
|
+
missing_digests.each do |alg|
|
117
|
+
index.set_digest(relpath, alg, hexdigests[i])
|
118
|
+
i += 1
|
119
|
+
end
|
120
|
+
end
|
121
|
+
end
|
122
|
+
|
123
|
+
end
|
124
|
+
end
|
data/lib/fixi/command.rb
CHANGED
@@ -1,8 +1,9 @@
|
|
1
1
|
module Fixi::Command
|
2
2
|
def self.banner(name)
|
3
|
-
|
4
|
-
|
5
|
-
"#{const_get(
|
3
|
+
n = name.capitalize
|
4
|
+
"fixi-#{name}: #{const_get(n).synopsis}\n\n" +
|
5
|
+
"usage: fixi #{name} [<options>] #{const_get(n).arghelp}\n\n" +
|
6
|
+
"#{const_get(n).details}\n\n" +
|
6
7
|
"Options:"
|
7
8
|
end
|
8
9
|
end
|
data/lib/fixi/index.rb
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
require 'sqlite3'
|
2
2
|
|
3
3
|
class Fixi::Index
|
4
|
-
attr_reader :dotpath, :rootpath, :dbversion, :algorithms
|
4
|
+
attr_reader :dotpath, :rootpath, :dbversion, :algorithms, :includes, :excludes
|
5
5
|
|
6
6
|
def initialize(startpath, create=false, algorithms=nil)
|
7
7
|
startpath = File.expand_path(startpath || ".")
|
@@ -141,21 +141,27 @@ class Fixi::Index
|
|
141
141
|
@db.execute(sql, relpath)
|
142
142
|
end
|
143
143
|
|
144
|
-
def
|
144
|
+
def set_digest(relpath, alg, val)
|
145
|
+
sql = "update file set #{alg} = '#{val}' where relpath = ?"
|
146
|
+
@db.execute(sql, relpath)
|
147
|
+
end
|
148
|
+
|
149
|
+
def add(relpath, compute_checksums=true)
|
145
150
|
abspath = File.join(@rootpath, relpath)
|
146
|
-
sql = "insert into file (relpath, size, mtime
|
147
|
-
sql += @algorithms
|
148
|
-
sql += ") values (:relpath, :size, :mtime
|
151
|
+
sql = "insert into file (relpath, size, mtime"
|
152
|
+
sql += ", " + @algorithms if compute_checksums
|
153
|
+
sql += ") values (:relpath, :size, :mtime"
|
149
154
|
values = Hash.new
|
150
155
|
values[:relpath] = relpath
|
151
156
|
values[:size] = File.size abspath
|
152
157
|
values[:mtime] = File.mtime(abspath).to_i
|
153
|
-
|
154
|
-
|
155
|
-
|
156
|
-
|
157
|
-
|
158
|
-
|
158
|
+
if compute_checksums
|
159
|
+
hexdigests = Fixi::hexdigests(Fixi::digests(@algorithms), abspath)
|
160
|
+
i = 0
|
161
|
+
@algorithms.split(",").each do |alg|
|
162
|
+
sql += ", '" + hexdigests[i] + "'"
|
163
|
+
i += 1
|
164
|
+
end
|
159
165
|
end
|
160
166
|
sql += ")"
|
161
167
|
@db.execute(sql, values)
|
@@ -171,6 +177,13 @@ class Fixi::Index
|
|
171
177
|
puts "Fixi database version #{dbversion}"
|
172
178
|
end
|
173
179
|
|
180
|
+
def matches_any?(path, patterns)
|
181
|
+
patterns.each do |pattern|
|
182
|
+
return true if pattern.match(path)
|
183
|
+
end
|
184
|
+
return false
|
185
|
+
end
|
186
|
+
|
174
187
|
private
|
175
188
|
|
176
189
|
def load_patterns(name)
|
@@ -185,13 +198,6 @@ class Fixi::Index
|
|
185
198
|
result
|
186
199
|
end
|
187
200
|
|
188
|
-
def matches_any?(path, patterns)
|
189
|
-
patterns.each do |pattern|
|
190
|
-
return true if pattern.match(path)
|
191
|
-
end
|
192
|
-
return false
|
193
|
-
end
|
194
|
-
|
195
201
|
# Return the first .fixi directory we find while traversing up the tree
|
196
202
|
def find_dotpath(path, startpath=path)
|
197
203
|
dotpath = File.join(path, ".fixi")
|
data/lib/fixi/version.rb
CHANGED
data/lib/fixi.rb
CHANGED
@@ -39,4 +39,16 @@ module Fixi
|
|
39
39
|
}
|
40
40
|
hds
|
41
41
|
end
|
42
|
+
|
43
|
+
def self.set_metadata(path, stat)
|
44
|
+
File.utime(stat.atime, stat.mtime, path)
|
45
|
+
begin
|
46
|
+
File.chown(stat.uid, stat.gid, path)
|
47
|
+
rescue Errno::EPERM
|
48
|
+
File.chmod(stat.mode & 01777, path)
|
49
|
+
else
|
50
|
+
File.chmod(stat.mode, path)
|
51
|
+
end
|
52
|
+
end
|
53
|
+
|
42
54
|
end
|
@@ -0,0 +1,29 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe Fixi::Command::Init do
|
4
|
+
describe "::synopsis" do
|
5
|
+
it 'should be a non-empty string' do
|
6
|
+
Fixi::Command::Init::synopsis.length.should_not == 0
|
7
|
+
end
|
8
|
+
end
|
9
|
+
|
10
|
+
describe "::details" do
|
11
|
+
it 'should be a non-empty string' do
|
12
|
+
Fixi::Command::Init::details.length.should_not == 0
|
13
|
+
end
|
14
|
+
end
|
15
|
+
|
16
|
+
describe "execute" do
|
17
|
+
include FixiTestHelperMethods
|
18
|
+
before do
|
19
|
+
@command = Fixi::Command::Init.new
|
20
|
+
end
|
21
|
+
|
22
|
+
it "should accept zero args" do
|
23
|
+
capture_stdout
|
24
|
+
@command.execute([])
|
25
|
+
release_stdout
|
26
|
+
end
|
27
|
+
|
28
|
+
end
|
29
|
+
end
|
@@ -0,0 +1,15 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe "String#pack" do
|
4
|
+
it 'should drop leading whitespace' do
|
5
|
+
"\n foo".pack.should == "foo"
|
6
|
+
end
|
7
|
+
|
8
|
+
it 'should drop trailing whitespace' do
|
9
|
+
"\n foo".pack.should == "foo"
|
10
|
+
end
|
11
|
+
|
12
|
+
it 'should turn multi whitespace into one space' do
|
13
|
+
"foo \n\n bar".pack.should == "foo bar"
|
14
|
+
end
|
15
|
+
end
|
@@ -0,0 +1,47 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
require 'tempfile'
|
3
|
+
|
4
|
+
describe Fixi do
|
5
|
+
describe "::command" do
|
6
|
+
it 'should return nil for bogus name' do
|
7
|
+
Fixi::command("bogus").should == nil
|
8
|
+
end
|
9
|
+
|
10
|
+
it 'should return instance for real name' do
|
11
|
+
Fixi::command("init").should_not == nil
|
12
|
+
end
|
13
|
+
end
|
14
|
+
|
15
|
+
describe "::digests" do
|
16
|
+
it 'should raise error for bogus name' do
|
17
|
+
lambda { Fixi::digests("bogus") }.should raise_error
|
18
|
+
end
|
19
|
+
|
20
|
+
it 'should return instance for real name' do
|
21
|
+
Fixi::digests("md5").should_not == nil
|
22
|
+
end
|
23
|
+
end
|
24
|
+
|
25
|
+
describe "::hexdigests" do
|
26
|
+
before(:all) do
|
27
|
+
@file = Tempfile.new('foo')
|
28
|
+
@file.write('foo')
|
29
|
+
@file.close
|
30
|
+
end
|
31
|
+
|
32
|
+
it 'should compute correct single checksum' do
|
33
|
+
hexdigests = Fixi::hexdigests(Fixi::digests("md5"), @file.path)
|
34
|
+
hexdigests.should == ["acbd18db4cc2f85cedef654fccc4a4d8"]
|
35
|
+
end
|
36
|
+
|
37
|
+
it 'should compute correct multi checksum' do
|
38
|
+
hexdigests = Fixi::hexdigests(Fixi::digests("md5,sha1"), @file.path)
|
39
|
+
hexdigests.should == ["acbd18db4cc2f85cedef654fccc4a4d8",
|
40
|
+
"0beec7b5ea3f0fdbc95d0dd47f3c5bc275da8a33"]
|
41
|
+
end
|
42
|
+
|
43
|
+
after(:all) do
|
44
|
+
@file.unlink
|
45
|
+
end
|
46
|
+
end
|
47
|
+
end
|
data/spec/spec_helper.rb
ADDED
@@ -0,0 +1,27 @@
|
|
1
|
+
require 'rubygems'
|
2
|
+
require 'simplecov'
|
3
|
+
SimpleCov.start
|
4
|
+
require 'rspec'
|
5
|
+
require 'fixi'
|
6
|
+
|
7
|
+
require 'tempfile'
|
8
|
+
|
9
|
+
module FixiTestHelperMethods
|
10
|
+
# Start capturing stdout
|
11
|
+
def capture_stdout
|
12
|
+
@orig_stdout = $stdout
|
13
|
+
@stdout_file = Tempfile.new("stdout")
|
14
|
+
$stdout = @stdout_file
|
15
|
+
end
|
16
|
+
|
17
|
+
# Finish capturing stdout, setting @stdout to have each line of output
|
18
|
+
def release_stdout
|
19
|
+
$stdout = @orig_stdout
|
20
|
+
@stdout_file.rewind
|
21
|
+
@stdout = []
|
22
|
+
@stdout_file.each do |line|
|
23
|
+
@stdout << line
|
24
|
+
end
|
25
|
+
@stdout_file.unlink
|
26
|
+
end
|
27
|
+
end
|
metadata
CHANGED
@@ -2,7 +2,7 @@
|
|
2
2
|
name: fixi
|
3
3
|
version: !ruby/object:Gem::Version
|
4
4
|
prerelease:
|
5
|
-
version: 0.0
|
5
|
+
version: 0.1.0
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
8
8
|
- Chris Wilper
|
@@ -10,10 +10,10 @@ autorequire:
|
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
12
|
|
13
|
-
date: 2011-12-
|
13
|
+
date: 2011-12-16 00:00:00 Z
|
14
14
|
dependencies:
|
15
15
|
- !ruby/object:Gem::Dependency
|
16
|
-
name:
|
16
|
+
name: rspec
|
17
17
|
prerelease: false
|
18
18
|
requirement: &id001 !ruby/object:Gem::Requirement
|
19
19
|
none: false
|
@@ -21,10 +21,10 @@ dependencies:
|
|
21
21
|
- - ">="
|
22
22
|
- !ruby/object:Gem::Version
|
23
23
|
version: "0"
|
24
|
-
type: :
|
24
|
+
type: :development
|
25
25
|
version_requirements: *id001
|
26
26
|
- !ruby/object:Gem::Dependency
|
27
|
-
name:
|
27
|
+
name: simplecov
|
28
28
|
prerelease: false
|
29
29
|
requirement: &id002 !ruby/object:Gem::Requirement
|
30
30
|
none: false
|
@@ -32,8 +32,30 @@ dependencies:
|
|
32
32
|
- - ">="
|
33
33
|
- !ruby/object:Gem::Version
|
34
34
|
version: "0"
|
35
|
-
type: :
|
35
|
+
type: :development
|
36
36
|
version_requirements: *id002
|
37
|
+
- !ruby/object:Gem::Dependency
|
38
|
+
name: trollop
|
39
|
+
prerelease: false
|
40
|
+
requirement: &id003 !ruby/object:Gem::Requirement
|
41
|
+
none: false
|
42
|
+
requirements:
|
43
|
+
- - ">="
|
44
|
+
- !ruby/object:Gem::Version
|
45
|
+
version: "0"
|
46
|
+
type: :runtime
|
47
|
+
version_requirements: *id003
|
48
|
+
- !ruby/object:Gem::Dependency
|
49
|
+
name: sqlite3
|
50
|
+
prerelease: false
|
51
|
+
requirement: &id004 !ruby/object:Gem::Requirement
|
52
|
+
none: false
|
53
|
+
requirements:
|
54
|
+
- - ">="
|
55
|
+
- !ruby/object:Gem::Version
|
56
|
+
version: "0"
|
57
|
+
type: :runtime
|
58
|
+
version_requirements: *id004
|
37
59
|
description: Keeps an index of checksums and lets you update and verify them
|
38
60
|
email:
|
39
61
|
- cwilper@gmail.com
|
@@ -46,13 +68,15 @@ extra_rdoc_files: []
|
|
46
68
|
files:
|
47
69
|
- .gitignore
|
48
70
|
- Gemfile
|
49
|
-
-
|
71
|
+
- LICENSE
|
72
|
+
- README.md
|
50
73
|
- Rakefile
|
51
74
|
- bin/fixi
|
52
75
|
- fixi.gemspec
|
53
76
|
- lib/fixi.rb
|
54
77
|
- lib/fixi/command.rb
|
55
78
|
- lib/fixi/command/add.rb
|
79
|
+
- lib/fixi/command/bag.rb
|
56
80
|
- lib/fixi/command/check.rb
|
57
81
|
- lib/fixi/command/commit.rb
|
58
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- lib/fixi/command/info.rb
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@@ -60,9 +84,14 @@ files:
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- lib/fixi/command/ls.rb
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61
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- lib/fixi/command/rm.rb
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- lib/fixi/command/sum.rb
|
87
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+
- lib/fixi/command/unbag.rb
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63
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- lib/fixi/index.rb
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64
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- lib/fixi/patch/string_pack.rb
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- lib/fixi/version.rb
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91
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+
- spec/lib/fixi/command/init_spec.rb
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+
- spec/lib/fixi/patch/string_pack_spec.rb
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- spec/lib/fixi_spec.rb
|
94
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+
- spec/spec_helper.rb
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66
95
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homepage: ""
|
67
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licenses: []
|
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97
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|
@@ -90,5 +119,8 @@ rubygems_version: 1.8.11
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|
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signing_key:
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|
specification_version: 3
|
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summary: A fixity tracker utility
|
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|
-
test_files:
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|
-
|
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+
test_files:
|
123
|
+
- spec/lib/fixi/command/init_spec.rb
|
124
|
+
- spec/lib/fixi/patch/string_pack_spec.rb
|
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|
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- spec/lib/fixi_spec.rb
|
126
|
+
- spec/spec_helper.rb
|
data/README
DELETED
@@ -1,19 +0,0 @@
|
|
1
|
-
Fixi - Source Code
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2
|
-
==================
|
3
|
-
|
4
|
-
A fixity tracker utility.
|
5
|
-
|
6
|
-
Installing From RubyGems.org
|
7
|
-
----------------------------
|
8
|
-
|
9
|
-
> [sudo] gem install fixi
|
10
|
-
|
11
|
-
Installing From Source
|
12
|
-
----------------------
|
13
|
-
|
14
|
-
> [sudo] rake install
|
15
|
-
|
16
|
-
Usage
|
17
|
-
-----
|
18
|
-
|
19
|
-
To see usage, after installing, run fixi --help
|