finishm 0.0.5 → 0.0.6
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/finishm.gemspec +2 -2
- data/lib/finishm/roundup.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: fd108980dbaa801a2989d17f35c59249cc7b16e2
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4
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+
data.tar.gz: 0533d456de22bcda37b7578f0860b50e96ebf6f6
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5
5
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SHA512:
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6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: c7c29e7353c0cc55a745a803fbeea5d87196a5e922c8551a0fb04b44bd928cd922d664d3e1cf1ad86539a5f090dfdfc77fad23667b2eda3bab822724c3da9b00
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|
7
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+
data.tar.gz: 56785e4404f2da18c76e399fc3747f71bb82fb259fcd42851b7559d7902f40b33d19b070f2c605b3b360de0fe182f2d2c4f5b4417a6430b3b2fd526cc561a0d9
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.0.
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1
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+
0.0.6
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data/finishm.gemspec
CHANGED
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@@ -2,12 +2,12 @@
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2
2
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# DO NOT EDIT THIS FILE DIRECTLY
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3
3
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# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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4
4
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# -*- encoding: utf-8 -*-
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5
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-
# stub: finishm 0.0.
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5
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+
# stub: finishm 0.0.6 ruby lib
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6
6
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# stub: ext/mkrf_conf.rb
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7
7
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8
8
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Gem::Specification.new do |s|
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9
9
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s.name = "finishm"
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10
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-
s.version = "0.0.
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|
10
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+
s.version = "0.0.6"
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11
11
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12
12
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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13
13
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s.require_paths = ["lib"]
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data/lib/finishm/roundup.rb
CHANGED
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@@ -197,7 +197,7 @@ the finishm_roundup_results directory in FASTA format. The procedure is then rep
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197
197
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# Just arbitrarily put in 100 N characters, to denote a join, but no gapfill
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198
198
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scaffold_sequence = scaffold_sequence+('N'*100)+rhs_sequence
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|
199
199
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else
|
|
200
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-
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|
200
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+
aconn.collapse_paths_to_maximal_coverage_path! if options[:gapfill_with_max_coverage]
|
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201
201
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scaffold_sequence, variants = printer.ready_two_contigs_and_connections(
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202
202
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master_graph.graph,
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203
203
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scaffold_sequence,
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