finishm 0.0.5 → 0.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/finishm.gemspec +2 -2
- data/lib/finishm/roundup.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: fd108980dbaa801a2989d17f35c59249cc7b16e2
|
|
4
|
+
data.tar.gz: 0533d456de22bcda37b7578f0860b50e96ebf6f6
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: c7c29e7353c0cc55a745a803fbeea5d87196a5e922c8551a0fb04b44bd928cd922d664d3e1cf1ad86539a5f090dfdfc77fad23667b2eda3bab822724c3da9b00
|
|
7
|
+
data.tar.gz: 56785e4404f2da18c76e399fc3747f71bb82fb259fcd42851b7559d7902f40b33d19b070f2c605b3b360de0fe182f2d2c4f5b4417a6430b3b2fd526cc561a0d9
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.0.
|
|
1
|
+
0.0.6
|
data/finishm.gemspec
CHANGED
|
@@ -2,12 +2,12 @@
|
|
|
2
2
|
# DO NOT EDIT THIS FILE DIRECTLY
|
|
3
3
|
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
|
|
4
4
|
# -*- encoding: utf-8 -*-
|
|
5
|
-
# stub: finishm 0.0.
|
|
5
|
+
# stub: finishm 0.0.6 ruby lib
|
|
6
6
|
# stub: ext/mkrf_conf.rb
|
|
7
7
|
|
|
8
8
|
Gem::Specification.new do |s|
|
|
9
9
|
s.name = "finishm"
|
|
10
|
-
s.version = "0.0.
|
|
10
|
+
s.version = "0.0.6"
|
|
11
11
|
|
|
12
12
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
13
13
|
s.require_paths = ["lib"]
|
data/lib/finishm/roundup.rb
CHANGED
|
@@ -197,7 +197,7 @@ the finishm_roundup_results directory in FASTA format. The procedure is then rep
|
|
|
197
197
|
# Just arbitrarily put in 100 N characters, to denote a join, but no gapfill
|
|
198
198
|
scaffold_sequence = scaffold_sequence+('N'*100)+rhs_sequence
|
|
199
199
|
else
|
|
200
|
-
|
|
200
|
+
aconn.collapse_paths_to_maximal_coverage_path! if options[:gapfill_with_max_coverage]
|
|
201
201
|
scaffold_sequence, variants = printer.ready_two_contigs_and_connections(
|
|
202
202
|
master_graph.graph,
|
|
203
203
|
scaffold_sequence,
|