fhir_models 3.0.2 → 3.0.3

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Files changed (174) hide show
  1. checksums.yaml +4 -4
  2. data/.travis.yml +5 -5
  3. data/README.md +54 -2
  4. data/Rakefile +1 -0
  5. data/bin/console +4 -4
  6. data/fhir_models.gemspec +4 -4
  7. data/lib/fhir_models/definitions/schema/fhir-xhtml.xsd +0 -0
  8. data/lib/fhir_models/definitions/schema/xml.xsd +0 -0
  9. data/lib/fhir_models/definitions/schema/xmldsig-core-schema.xsd +0 -0
  10. data/lib/fhir_models/examples/json/appointmentresponse-example-req.json +0 -0
  11. data/lib/fhir_models/examples/json/appointmentresponse-example.json +0 -0
  12. data/lib/fhir_models/examples/json/basic-example-narrative.json +0 -0
  13. data/lib/fhir_models/examples/json/basic-example2.json +0 -0
  14. data/lib/fhir_models/examples/json/capabilitystatement-phr-example.json +0 -0
  15. data/lib/fhir_models/examples/json/claim-example-oral-contained-identifier.json +0 -0
  16. data/lib/fhir_models/examples/json/claim-example-oral-identifier.json +0 -0
  17. data/lib/fhir_models/examples/json/claim-example-pharmacy.json +0 -0
  18. data/lib/fhir_models/examples/json/claim-example-professional.json +0 -0
  19. data/lib/fhir_models/examples/json/claim-example-vision.json +0 -0
  20. data/lib/fhir_models/examples/json/claim-example.json +0 -0
  21. data/lib/fhir_models/examples/json/condition-example-stroke.json +0 -0
  22. data/lib/fhir_models/examples/json/condition-example.json +0 -0
  23. data/lib/fhir_models/examples/json/coverage-example-ehic.json +0 -0
  24. data/lib/fhir_models/examples/json/coverage-example-selfpay.json +0 -0
  25. data/lib/fhir_models/examples/json/device-example-ihe-pcd.json +0 -0
  26. data/lib/fhir_models/examples/json/device-example-pacemaker.json +0 -0
  27. data/lib/fhir_models/examples/json/device-example-software.json +0 -0
  28. data/lib/fhir_models/examples/json/eligibilityrequest-example.json +0 -0
  29. data/lib/fhir_models/examples/json/enrollmentrequest-example.json +0 -0
  30. data/lib/fhir_models/examples/json/group-example-member.json +0 -0
  31. data/lib/fhir_models/examples/json/immunizationrecommendation-example.json +0 -0
  32. data/lib/fhir_models/examples/json/list-example-allergies.json +0 -0
  33. data/lib/fhir_models/examples/json/list-example-empty.json +0 -0
  34. data/lib/fhir_models/examples/json/list-example-medlist.json +0 -0
  35. data/lib/fhir_models/examples/json/list-example-simple-empty.json +0 -0
  36. data/lib/fhir_models/examples/json/list-example.json +0 -0
  37. data/lib/fhir_models/examples/json/location-example-ambulance.json +0 -0
  38. data/lib/fhir_models/examples/json/location-example-hl7hq.json +0 -0
  39. data/lib/fhir_models/examples/json/location-example-patients-home.json +0 -0
  40. data/lib/fhir_models/examples/json/location-example-ukpharmacy.json +0 -0
  41. data/lib/fhir_models/examples/json/location-example.json +0 -0
  42. data/lib/fhir_models/examples/json/media-example-sound.json +0 -0
  43. data/lib/fhir_models/examples/json/medicationexample1.json +0 -0
  44. data/lib/fhir_models/examples/json/namingsystem-example-id.json +0 -0
  45. data/lib/fhir_models/examples/json/namingsystem-example-replaced.json +0 -0
  46. data/lib/fhir_models/examples/json/namingsystem-example.json +0 -0
  47. data/lib/fhir_models/examples/json/operationoutcome-example-allok.json +0 -0
  48. data/lib/fhir_models/examples/json/operationoutcome-example-exception.json +0 -0
  49. data/lib/fhir_models/examples/json/operationoutcome-example-searchfail.json +0 -0
  50. data/lib/fhir_models/examples/json/organization-example-gastro.json +0 -0
  51. data/lib/fhir_models/examples/json/organization-example-good-health-care.json +0 -0
  52. data/lib/fhir_models/examples/json/organization-example-insurer.json +0 -0
  53. data/lib/fhir_models/examples/json/organization-example-lab.json +0 -0
  54. data/lib/fhir_models/examples/json/organization-example-mmanu.json +0 -0
  55. data/lib/fhir_models/examples/json/organization-example.json +0 -0
  56. data/lib/fhir_models/examples/json/parameters-example.json +0 -0
  57. data/lib/fhir_models/examples/json/patient-example-b.json +0 -0
  58. data/lib/fhir_models/examples/json/patient-example-c.json +0 -0
  59. data/lib/fhir_models/examples/json/patient-example-dicom.json +0 -0
  60. data/lib/fhir_models/examples/json/patient-example-ihe-pcd.json +0 -0
  61. data/lib/fhir_models/examples/json/patient-example-xcda.json +0 -0
  62. data/lib/fhir_models/examples/json/patient-example-xds.json +0 -0
  63. data/lib/fhir_models/examples/json/patient-examples-cypress-template.json +0 -0
  64. data/lib/fhir_models/examples/json/patient-examples-general.json +0 -0
  65. data/lib/fhir_models/examples/json/patient-genetics-example1.json +0 -0
  66. data/lib/fhir_models/examples/json/patient-glossy-example.json +0 -0
  67. data/lib/fhir_models/examples/json/person-example-f002-ariadne.json +0 -0
  68. data/lib/fhir_models/examples/json/person-example.json +0 -0
  69. data/lib/fhir_models/examples/json/practitioner-example-xcda-author.json +0 -0
  70. data/lib/fhir_models/examples/json/processrequest-example-poll-eob.json +0 -0
  71. data/lib/fhir_models/examples/json/processrequest-example-poll-exclusive.json +0 -0
  72. data/lib/fhir_models/examples/json/processrequest-example-poll-inclusive.json +0 -0
  73. data/lib/fhir_models/examples/json/processrequest-example-poll-payrec.json +0 -0
  74. data/lib/fhir_models/examples/json/processrequest-example-reprocess.json +0 -0
  75. data/lib/fhir_models/examples/json/processrequest-example-reverse.json +0 -0
  76. data/lib/fhir_models/examples/json/processrequest-example-status.json +0 -0
  77. data/lib/fhir_models/examples/json/processrequest-example.json +0 -0
  78. data/lib/fhir_models/examples/json/processresponse-example.json +0 -0
  79. data/lib/fhir_models/examples/json/relatedperson-example-f001-sarah.json +0 -0
  80. data/lib/fhir_models/examples/json/relatedperson-example-f002-ariadne.json +0 -0
  81. data/lib/fhir_models/examples/json/researchstudy-example.json +0 -0
  82. data/lib/fhir_models/examples/json/researchsubject-example.json +0 -0
  83. data/lib/fhir_models/examples/json/riskassessment-example-population.json +0 -0
  84. data/lib/fhir_models/examples/json/searchparameter-example-extension.json +0 -0
  85. data/lib/fhir_models/examples/json/slot-example-busy.json +0 -0
  86. data/lib/fhir_models/examples/json/slot-example-tentative.json +0 -0
  87. data/lib/fhir_models/examples/json/slot-example-unavailable.json +0 -0
  88. data/lib/fhir_models/examples/json/valueset-example-yesnodontknow.json +0 -0
  89. data/lib/fhir_models/examples/xml/appointment-example-request.xml +0 -0
  90. data/lib/fhir_models/examples/xml/appointmentresponse-example-req.xml +0 -0
  91. data/lib/fhir_models/examples/xml/appointmentresponse-example.xml +0 -0
  92. data/lib/fhir_models/examples/xml/basic-example-narrative.xml +0 -0
  93. data/lib/fhir_models/examples/xml/basic-example2.xml +0 -0
  94. data/lib/fhir_models/examples/xml/capabilitystatement-phr-example.xml +0 -0
  95. data/lib/fhir_models/examples/xml/claim-example-oral-contained-identifier.xml +0 -0
  96. data/lib/fhir_models/examples/xml/claim-example-oral-identifier.xml +0 -0
  97. data/lib/fhir_models/examples/xml/claim-example-pharmacy.xml +0 -0
  98. data/lib/fhir_models/examples/xml/claim-example-professional.xml +0 -0
  99. data/lib/fhir_models/examples/xml/claim-example-vision.xml +0 -0
  100. data/lib/fhir_models/examples/xml/claim-example.xml +0 -0
  101. data/lib/fhir_models/examples/xml/condition-example-stroke.xml +0 -0
  102. data/lib/fhir_models/examples/xml/condition-example.xml +0 -0
  103. data/lib/fhir_models/examples/xml/coverage-example-ehic.xml +0 -0
  104. data/lib/fhir_models/examples/xml/coverage-example-selfpay.xml +0 -0
  105. data/lib/fhir_models/examples/xml/device-example-ihe-pcd.xml +0 -0
  106. data/lib/fhir_models/examples/xml/device-example-pacemaker.xml +0 -0
  107. data/lib/fhir_models/examples/xml/device-example-software.xml +0 -0
  108. data/lib/fhir_models/examples/xml/eligibilityrequest-example.xml +0 -0
  109. data/lib/fhir_models/examples/xml/enrollmentrequest-example.xml +0 -0
  110. data/lib/fhir_models/examples/xml/group-example-member.xml +0 -0
  111. data/lib/fhir_models/examples/xml/immunizationrecommendation-example.xml +0 -0
  112. data/lib/fhir_models/examples/xml/list-example-allergies.xml +0 -0
  113. data/lib/fhir_models/examples/xml/list-example-empty.xml +0 -0
  114. data/lib/fhir_models/examples/xml/list-example-medlist.xml +0 -0
  115. data/lib/fhir_models/examples/xml/list-example-simple-empty.xml +0 -0
  116. data/lib/fhir_models/examples/xml/list-example.xml +0 -0
  117. data/lib/fhir_models/examples/xml/location-example-ambulance.xml +0 -0
  118. data/lib/fhir_models/examples/xml/location-example-hl7hq.xml +0 -0
  119. data/lib/fhir_models/examples/xml/location-example-patients-home.xml +0 -0
  120. data/lib/fhir_models/examples/xml/location-example-ukpharmacy.xml +0 -0
  121. data/lib/fhir_models/examples/xml/location-example.xml +0 -0
  122. data/lib/fhir_models/examples/xml/media-example-sound.xml +0 -0
  123. data/lib/fhir_models/examples/xml/medicationexample1.xml +0 -0
  124. data/lib/fhir_models/examples/xml/namingsystem-example-id.xml +0 -0
  125. data/lib/fhir_models/examples/xml/namingsystem-example-replaced.xml +0 -0
  126. data/lib/fhir_models/examples/xml/namingsystem-example.xml +0 -0
  127. data/lib/fhir_models/examples/xml/operationoutcome-example-allok.xml +0 -0
  128. data/lib/fhir_models/examples/xml/operationoutcome-example-exception.xml +0 -0
  129. data/lib/fhir_models/examples/xml/operationoutcome-example-searchfail.xml +0 -0
  130. data/lib/fhir_models/examples/xml/organization-example-f001-burgers.xml +0 -0
  131. data/lib/fhir_models/examples/xml/organization-example-f002-burgers-card.xml +0 -0
  132. data/lib/fhir_models/examples/xml/organization-example-f003-burgers-ENT.xml +0 -0
  133. data/lib/fhir_models/examples/xml/organization-example-gastro.xml +0 -0
  134. data/lib/fhir_models/examples/xml/organization-example-good-health-care.xml +0 -0
  135. data/lib/fhir_models/examples/xml/organization-example-insurer.xml +0 -0
  136. data/lib/fhir_models/examples/xml/organization-example-lab.xml +0 -0
  137. data/lib/fhir_models/examples/xml/organization-example-mmanu.xml +0 -0
  138. data/lib/fhir_models/examples/xml/organization-example.xml +0 -0
  139. data/lib/fhir_models/examples/xml/parameters-example.xml +0 -0
  140. data/lib/fhir_models/examples/xml/patient-example-b.xml +0 -0
  141. data/lib/fhir_models/examples/xml/patient-example-c.xml +0 -0
  142. data/lib/fhir_models/examples/xml/patient-example-dicom.xml +0 -0
  143. data/lib/fhir_models/examples/xml/patient-example-ihe-pcd.xml +0 -0
  144. data/lib/fhir_models/examples/xml/patient-example-xcda.xml +0 -0
  145. data/lib/fhir_models/examples/xml/patient-example-xds.xml +0 -0
  146. data/lib/fhir_models/examples/xml/patient-examples-cypress-template.xml +0 -0
  147. data/lib/fhir_models/examples/xml/patient-examples-general.xml +0 -0
  148. data/lib/fhir_models/examples/xml/patient-genetics-example1.xml +0 -0
  149. data/lib/fhir_models/examples/xml/patient-glossy-example.xml +0 -0
  150. data/lib/fhir_models/examples/xml/person-example-f002-ariadne.xml +0 -0
  151. data/lib/fhir_models/examples/xml/person-example.xml +0 -0
  152. data/lib/fhir_models/examples/xml/practitioner-example-xcda-author.xml +0 -0
  153. data/lib/fhir_models/examples/xml/processrequest-example-poll-eob.xml +0 -0
  154. data/lib/fhir_models/examples/xml/processrequest-example-poll-exclusive.xml +0 -0
  155. data/lib/fhir_models/examples/xml/processrequest-example-poll-inclusive.xml +0 -0
  156. data/lib/fhir_models/examples/xml/processrequest-example-poll-payrec.xml +0 -0
  157. data/lib/fhir_models/examples/xml/processrequest-example-reprocess.xml +0 -0
  158. data/lib/fhir_models/examples/xml/processrequest-example-reverse.xml +0 -0
  159. data/lib/fhir_models/examples/xml/processrequest-example-status.xml +0 -0
  160. data/lib/fhir_models/examples/xml/processrequest-example.xml +0 -0
  161. data/lib/fhir_models/examples/xml/processresponse-example.xml +0 -0
  162. data/lib/fhir_models/examples/xml/relatedperson-example-f001-sarah.xml +0 -0
  163. data/lib/fhir_models/examples/xml/relatedperson-example-f002-ariadne.xml +0 -0
  164. data/lib/fhir_models/examples/xml/researchstudy-example.xml +0 -0
  165. data/lib/fhir_models/examples/xml/researchsubject-example.xml +0 -0
  166. data/lib/fhir_models/examples/xml/riskassessment-example-population.xml +0 -0
  167. data/lib/fhir_models/examples/xml/schedule-example.xml +0 -0
  168. data/lib/fhir_models/examples/xml/searchparameter-example-extension.xml +0 -0
  169. data/lib/fhir_models/examples/xml/slot-example-busy.xml +0 -0
  170. data/lib/fhir_models/examples/xml/slot-example-tentative.xml +0 -0
  171. data/lib/fhir_models/examples/xml/slot-example-unavailable.xml +0 -0
  172. data/lib/fhir_models/examples/xml/valueset-example-yesnodontknow.xml +0 -0
  173. data/lib/fhir_models/version.rb +1 -1
  174. metadata +15 -8
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data/.travis.yml CHANGED
@@ -2,17 +2,17 @@ language: ruby
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  env:
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  - TESTMEMORY=0 GCDELAY=2.0
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  rvm:
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- - "2.1.10"
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- - "2.2.6"
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- - "2.3.3"
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- - "2.4.0"
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+ - 2.2
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+ - 2.3
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+ - 2.4
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+ - 2.5
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  script:
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  - bundle exec rake
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  - bundle exec codeclimate-test-reporter
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  notifications:
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  email:
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  recipients:
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- - healthcare-ci@googlegroups.com
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+ - fhir-testing-list@lists.mitre.org
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  on_failure: change
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  addons:
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  code_climate:
data/README.md CHANGED
@@ -7,7 +7,6 @@ The StructureDefinitions, XML Schemas, and examples are reused from the [HL7 FHI
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  ### Getting Started
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  ```
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  $ bundle install
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- $ bundle exec rake fhir:generate
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  $ bundle exec rake fhir:console
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  ```
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@@ -19,9 +18,62 @@ $ bundle exec rake fhir:console
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  - Primitive Extensions
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  - FHIR Comments
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+ ### Resource Basics
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+
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+ Using XML...
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+ ```ruby
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+ xml = File.read('patient-example.xml')
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+ patient = FHIR.from_contents(xml)
27
+ puts patient.to_xml
28
+ ```
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+ Using JSON...
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+ ```ruby
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+ json = File.read('patient-example.json')
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+ patient = FHIR.from_contents(json)
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+ puts patient.to_json
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+ ```
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+
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+ Creating an `Observation` by hand...
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+ ```ruby
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+ obs = FHIR::Observation.new(
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+ 'status' => 'final',
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+ 'code' => {
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+ 'coding' => [{ 'system' => 'http://loinc.org', 'code' => '3141-9', 'display' => 'Weight Measured' }],
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+ 'text' => 'Weight Measured'
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+ },
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+ 'category' => {
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+ 'coding' => [{ 'system' => 'http://hl7.org/fhir/observation-category', 'code' => 'vital-signs' }]
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+ },
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+ 'subject' => { 'reference' => 'Patient/example' },
48
+ 'context' => { 'reference' => 'Encounter/example' }
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+ )
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+ obs.valueQuantity = FHIR::Quantity.new(
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+ 'value' => 185,
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+ 'unit' => 'lbs',
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+ 'code' => '[lb_av]',
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+ 'system' => 'http://unitsofmeasure.org'
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+ )
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+ ```
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+
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+ ### Validation
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+
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+ Using built in validation...
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+ ```ruby
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+ patient.valid? # returns true or false
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+ patient.validate # returns Hash of errors, empty if valid
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+ ```
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+
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+ Using a profile or structure definition...
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+ ```ruby
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+ sd = FHIR::Definitions.resource_definition('Patient')
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+ sd.validates_resource?(patient) # passing in FHIR::Patient
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+ # Validation failed? Get the errors and warnings...
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+ puts sd.errors
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+ puts sd.warnings
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+ ```
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  # License
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- Copyright 2014-2016 The MITRE Corporation
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+ Copyright 2014-2018 The MITRE Corporation
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  Licensed under the Apache License, Version 2.0 (the "License");
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  you may not use this file except in compliance with the License.
data/Rakefile CHANGED
@@ -2,6 +2,7 @@ require 'bundler/gem_tasks'
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  require 'rake/testtask'
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  require 'rspec/core/rake_task'
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  require 'rubocop/rake_task'
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+ require 'pry'
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  Dir['lib/fhir_models/tasks/**/*.rake'].each do |file|
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  load file
data/bin/console CHANGED
@@ -7,8 +7,8 @@ require 'fhir_models'
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  # with your gem easier. You can also use a different console, if you like.
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  # (If you use this, don't forget to add pry to your Gemfile!)
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- # require "pry"
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- # Pry.start
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+ require 'pry'
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+ Pry.start
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- require 'irb'
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- IRB.start
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+ # require 'irb'
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+ # IRB.start
data/fhir_models.gemspec CHANGED
@@ -6,7 +6,7 @@ require 'fhir_models/version'
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  Gem::Specification.new do |spec|
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  spec.name = 'fhir_models'
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  spec.version = FHIR::Models::VERSION
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- spec.authors = ['Jason Walonoski', 'Andre Quina', "Michael O'Keefe"]
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+ spec.authors = ['Jason Walonoski', 'Andre Quina', "Michael O'Keefe", 'Robert Scanlon']
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  spec.email = ['jwalonoski@mitre.org']
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  spec.summary = %q{A Gem for handling FHIR models in ruby}
@@ -20,10 +20,10 @@ Gem::Specification.new do |spec|
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  spec.executables = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
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  spec.require_paths = ['lib']
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- spec.add_dependency 'nokogiri', '>= 1.6'
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+ spec.add_dependency 'nokogiri', '>= 1.8.2'
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  spec.add_dependency 'date_time_precision', '>= 0.8'
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  spec.add_dependency 'bcp47', '>= 0.3'
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- spec.add_dependency 'mime-types', '>= 1.16'
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+ spec.add_dependency 'mime-types', '>= 1.16', '< 3'
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  spec.add_development_dependency 'bundler'
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  spec.add_development_dependency 'rake'
@@ -32,7 +32,7 @@ Gem::Specification.new do |spec|
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  spec.add_development_dependency 'rspec'
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  spec.add_development_dependency 'simplecov'
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  spec.add_development_dependency 'nokogiri-diff'
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- spec.add_development_dependency 'rubocop'
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+ spec.add_development_dependency 'rubocop', '0.49'
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  spec.add_development_dependency 'codeclimate-test-reporter'
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  spec.add_development_dependency 'guard-rspec'
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  spec.add_development_dependency 'guard-test'
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@@ -1,5 +1,5 @@
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  module FHIR
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  module Models
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- VERSION = '3.0.2'.freeze
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+ VERSION = '3.0.3'.freeze
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  end
5
5
  end
metadata CHANGED
@@ -1,16 +1,17 @@
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  --- !ruby/object:Gem::Specification
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  name: fhir_models
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  version: !ruby/object:Gem::Version
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- version: 3.0.2
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+ version: 3.0.3
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  platform: ruby
6
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  authors:
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  - Jason Walonoski
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  - Andre Quina
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  - Michael O'Keefe
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+ - Robert Scanlon
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  autorequire:
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  bindir: exe
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  cert_chain: []
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- date: 2017-08-10 00:00:00.000000000 Z
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+ date: 2018-05-01 00:00:00.000000000 Z
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  dependencies:
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16
  - !ruby/object:Gem::Dependency
16
17
  name: nokogiri
@@ -18,14 +19,14 @@ dependencies:
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  requirements:
19
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  - - ">="
20
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  - !ruby/object:Gem::Version
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- version: '1.6'
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+ version: 1.8.2
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: '1.6'
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+ version: 1.8.2
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  - !ruby/object:Gem::Dependency
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  name: date_time_precision
31
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  requirement: !ruby/object:Gem::Requirement
@@ -61,6 +62,9 @@ dependencies:
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  - - ">="
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  - !ruby/object:Gem::Version
63
64
  version: '1.16'
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+ - - "<"
66
+ - !ruby/object:Gem::Version
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+ version: '3'
64
68
  type: :runtime
65
69
  prerelease: false
66
70
  version_requirements: !ruby/object:Gem::Requirement
@@ -68,6 +72,9 @@ dependencies:
68
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  - - ">="
69
73
  - !ruby/object:Gem::Version
70
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  version: '1.16'
75
+ - - "<"
76
+ - !ruby/object:Gem::Version
77
+ version: '3'
71
78
  - !ruby/object:Gem::Dependency
72
79
  name: bundler
73
80
  requirement: !ruby/object:Gem::Requirement
@@ -170,16 +177,16 @@ dependencies:
170
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  name: rubocop
171
178
  requirement: !ruby/object:Gem::Requirement
172
179
  requirements:
173
- - - ">="
180
+ - - '='
174
181
  - !ruby/object:Gem::Version
175
- version: '0'
182
+ version: '0.49'
176
183
  type: :development
177
184
  prerelease: false
178
185
  version_requirements: !ruby/object:Gem::Requirement
179
186
  requirements:
180
- - - ">="
187
+ - - '='
181
188
  - !ruby/object:Gem::Version
182
- version: '0'
189
+ version: '0.49'
183
190
  - !ruby/object:Gem::Dependency
184
191
  name: codeclimate-test-reporter
185
192
  requirement: !ruby/object:Gem::Requirement