fhir_models 1.6.2 → 1.6.3

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Files changed (9) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +3 -0
  3. data/definitions/structures/profiles-types.json +23 -260
  4. data/fhir_models.gemspec +3 -1
  5. data/lib/bootstrap/xml.rb +1 -1
  6. data/lib/fhir_ext/StructureDefinition.rb +2 -2
  7. data/lib/fhir_models.rb +0 -1
  8. metadata +30 -3
  9. data/Gemfile.lock +0 -63
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data/.gitignore CHANGED
@@ -3,4 +3,7 @@ errors/**
3
3
  **/coverage/**
4
4
  fhir_models*log*
5
5
  invariants.txt
6
+ Gemfile.lock
7
+ .ruby-version
8
+ .ruby-gemset
6
9
 
data/definitions/structures/profiles-types.json CHANGED
@@ -2454,13 +2454,6 @@
2454
2454
  "ele-1"
2455
2455
  ],
2456
2456
  "constraint": [
2457
- {
2458
- "key": "ele-1",
2459
- "severity": "error",
2460
- "human": "All FHIR elements must have a @value or children",
2461
- "expression": "children().count() > id.count()",
2462
- "xpath": "@value|f:*|h:div"
2463
- },
2464
2457
  {
2465
2458
  "key": "ref-1",
2466
2459
  "severity": "error",
@@ -2611,13 +2604,6 @@
2611
2604
  "ele-1"
2612
2605
  ],
2613
2606
  "constraint": [
2614
- {
2615
- "key": "ele-1",
2616
- "severity": "error",
2617
- "human": "All FHIR elements must have a @value or children",
2618
- "expression": "children().count() > id.count()",
2619
- "xpath": "@value|f:*|h:div"
2620
- },
2621
2607
  {
2622
2608
  "key": "qty-3",
2623
2609
  "severity": "error",
@@ -2858,14 +2844,7 @@
2858
2844
  "ele-1"
2859
2845
  ],
2860
2846
  "constraint": [
2861
- {
2862
- "key": "ele-1",
2863
- "severity": "error",
2864
- "human": "All FHIR elements must have a @value or children",
2865
- "expression": "children().count() > id.count()",
2866
- "xpath": "@value|f:*|h:div"
2867
- },
2868
- {
2847
+ {
2869
2848
  "key": "per-1",
2870
2849
  "severity": "error",
2871
2850
  "human": "If present, start SHALL have a lower value than end",
@@ -3023,14 +3002,7 @@
3023
3002
  "ele-1"
3024
3003
  ],
3025
3004
  "constraint": [
3026
- {
3027
- "key": "ele-1",
3028
- "severity": "error",
3029
- "human": "All FHIR elements must have a @value or children",
3030
- "expression": "children().count() > id.count()",
3031
- "xpath": "@value|f:*|h:div"
3032
- },
3033
- {
3005
+ {
3034
3006
  "key": "att-1",
3035
3007
  "severity": "error",
3036
3008
  "human": "It the Attachment has data, it SHALL have a contentType",
@@ -3758,14 +3730,7 @@
3758
3730
  "ele-1"
3759
3731
  ],
3760
3732
  "constraint": [
3761
- {
3762
- "key": "ele-1",
3763
- "severity": "error",
3764
- "human": "All FHIR elements must have a @value or children",
3765
- "expression": "children().count() > id.count()",
3766
- "xpath": "@value|f:*|h:div"
3767
- },
3768
- {
3733
+ {
3769
3734
  "key": "rng-2",
3770
3735
  "severity": "error",
3771
3736
  "human": "If present, low SHALL have a lower value than high",
@@ -3925,13 +3890,6 @@
3925
3890
  "ele-1"
3926
3891
  ],
3927
3892
  "constraint": [
3928
- {
3929
- "key": "ele-1",
3930
- "severity": "error",
3931
- "human": "All FHIR elements must have a @value or children",
3932
- "expression": "children().count() > id.count()",
3933
- "xpath": "@value|f:*|h:div"
3934
- }
3935
3893
  ]
3936
3894
  },
3937
3895
  {
@@ -4302,15 +4260,7 @@
4302
4260
  "condition": [
4303
4261
  "ele-1"
4304
4262
  ],
4305
- "constraint": [
4306
- {
4307
- "key": "ele-1",
4308
- "severity": "error",
4309
- "human": "All FHIR elements must have a @value or children",
4310
- "expression": "children().count() > id.count()",
4311
- "xpath": "@value|f:*|h:div"
4312
- }
4313
- ]
4263
+ "constraint": [ ]
4314
4264
  },
4315
4265
  {
4316
4266
  "id": "Identifier.id",
@@ -4569,15 +4519,7 @@
4569
4519
  "condition": [
4570
4520
  "ele-1"
4571
4521
  ],
4572
- "constraint": [
4573
- {
4574
- "key": "ele-1",
4575
- "severity": "error",
4576
- "human": "All FHIR elements must have a @value or children",
4577
- "expression": "children().count() > id.count()",
4578
- "xpath": "@value|f:*|h:div"
4579
- }
4580
- ]
4522
+ "constraint": [ ]
4581
4523
  },
4582
4524
  {
4583
4525
  "id": "Coding.id",
@@ -4776,15 +4718,7 @@
4776
4718
  "condition": [
4777
4719
  "ele-1"
4778
4720
  ],
4779
- "constraint": [
4780
- {
4781
- "key": "ele-1",
4782
- "severity": "error",
4783
- "human": "All FHIR elements must have a @value or children",
4784
- "expression": "children().count() > id.count()",
4785
- "xpath": "@value|f:*|h:div"
4786
- }
4787
- ]
4721
+ "constraint": [ ]
4788
4722
  },
4789
4723
  {
4790
4724
  "id": "Signature.id",
@@ -5109,15 +5043,7 @@
5109
5043
  "condition": [
5110
5044
  "ele-1"
5111
5045
  ],
5112
- "constraint": [
5113
- {
5114
- "key": "ele-1",
5115
- "severity": "error",
5116
- "human": "All FHIR elements must have a @value or children",
5117
- "expression": "children().count() > id.count()",
5118
- "xpath": "@value|f:*|h:div"
5119
- }
5120
- ]
5046
+ "constraint": [ ]
5121
5047
  },
5122
5048
  {
5123
5049
  "id": "SampledData.id",
@@ -5367,13 +5293,6 @@
5367
5293
  "ele-1"
5368
5294
  ],
5369
5295
  "constraint": [
5370
- {
5371
- "key": "ele-1",
5372
- "severity": "error",
5373
- "human": "All FHIR elements must have a @value or children",
5374
- "expression": "children().count() > id.count()",
5375
- "xpath": "@value|f:*|h:div"
5376
- },
5377
5296
  {
5378
5297
  "key": "rat-1",
5379
5298
  "severity": "error",
@@ -5911,15 +5830,7 @@
5911
5830
  "condition": [
5912
5831
  "ele-1"
5913
5832
  ],
5914
- "constraint": [
5915
- {
5916
- "key": "ele-1",
5917
- "severity": "error",
5918
- "human": "All FHIR elements must have a @value or children",
5919
- "expression": "children().count() > id.count()",
5920
- "xpath": "@value|f:*|h:div"
5921
- }
5922
- ]
5833
+ "constraint": [ ]
5923
5834
  },
5924
5835
  {
5925
5836
  "id": "CodeableConcept.id",
@@ -6047,13 +5958,6 @@
6047
5958
  "ele-1"
6048
5959
  ],
6049
5960
  "constraint": [
6050
- {
6051
- "key": "ele-1",
6052
- "severity": "error",
6053
- "human": "All FHIR elements must have a @value or children",
6054
- "expression": "children().count() > id.count()",
6055
- "xpath": "@value|f:*|h:div"
6056
- },
6057
5961
  {
6058
5962
  "key": "ext-1",
6059
5963
  "severity": "error",
@@ -6421,15 +6325,7 @@
6421
6325
  "condition": [
6422
6326
  "ele-1"
6423
6327
  ],
6424
- "constraint": [
6425
- {
6426
- "key": "ele-1",
6427
- "severity": "error",
6428
- "human": "All FHIR elements must have a @value or children",
6429
- "expression": "children().count() > id.count()",
6430
- "xpath": "@value|f:*|h:div"
6431
- }
6432
- ]
6328
+ "constraint": [ ]
6433
6329
  },
6434
6330
  {
6435
6331
  "id": "BackboneElement.id",
@@ -6534,15 +6430,7 @@
6534
6430
  "condition": [
6535
6431
  "ele-1"
6536
6432
  ],
6537
- "constraint": [
6538
- {
6539
- "key": "ele-1",
6540
- "severity": "error",
6541
- "human": "All FHIR elements must have a @value or children",
6542
- "expression": "children().count() > id.count()",
6543
- "xpath": "@value|f:*|h:div"
6544
- }
6545
- ]
6433
+ "constraint": [ ]
6546
6434
  },
6547
6435
  {
6548
6436
  "id": "Narrative.id",
@@ -6717,15 +6605,7 @@
6717
6605
  "condition": [
6718
6606
  "ele-1"
6719
6607
  ],
6720
- "constraint": [
6721
- {
6722
- "key": "ele-1",
6723
- "severity": "error",
6724
- "human": "All FHIR elements must have a @value or children",
6725
- "expression": "children().count() > id.count()",
6726
- "xpath": "@value|f:*|h:div"
6727
- }
6728
- ]
6608
+ "constraint": [ ]
6729
6609
  },
6730
6610
  {
6731
6611
  "id": "Element.id",
@@ -6764,15 +6644,7 @@
6764
6644
  "condition": [
6765
6645
  "ele-1"
6766
6646
  ],
6767
- "constraint": [
6768
- {
6769
- "key": "ele-1",
6770
- "severity": "error",
6771
- "human": "All FHIR elements must have a @value or children",
6772
- "expression": "children().count() > id.count()",
6773
- "xpath": "@value|f:*|h:div"
6774
- }
6775
- ]
6647
+ "constraint": [ ]
6776
6648
  },
6777
6649
  {
6778
6650
  "id": "Element.id",
@@ -6831,15 +6703,7 @@
6831
6703
  "condition": [
6832
6704
  "ele-1"
6833
6705
  ],
6834
- "constraint": [
6835
- {
6836
- "key": "ele-1",
6837
- "severity": "error",
6838
- "human": "All FHIR elements must have a @value or children",
6839
- "expression": "children().count() > id.count()",
6840
- "xpath": "@value|f:*|h:div"
6841
- }
6842
- ]
6706
+ "constraint": [ ]
6843
6707
  },
6844
6708
  {
6845
6709
  "id": "Meta.id",
@@ -7066,15 +6930,7 @@
7066
6930
  "condition": [
7067
6931
  "ele-1"
7068
6932
  ],
7069
- "constraint": [
7070
- {
7071
- "key": "ele-1",
7072
- "severity": "error",
7073
- "human": "All FHIR elements must have a @value or children",
7074
- "expression": "children().count() > id.count()",
7075
- "xpath": "@value|f:*|h:div"
7076
- }
7077
- ]
6933
+ "constraint": [ ]
7078
6934
  },
7079
6935
  {
7080
6936
  "id": "RelatedResource.id",
@@ -7313,15 +7169,7 @@
7313
7169
  "condition": [
7314
7170
  "ele-1"
7315
7171
  ],
7316
- "constraint": [
7317
- {
7318
- "key": "ele-1",
7319
- "severity": "error",
7320
- "human": "All FHIR elements must have a @value or children",
7321
- "expression": "children().count() > id.count()",
7322
- "xpath": "@value|f:*|h:div"
7323
- }
7324
- ]
7172
+ "constraint": [ ]
7325
7173
  },
7326
7174
  {
7327
7175
  "id": "Address.id",
@@ -7692,15 +7540,7 @@
7692
7540
  "condition": [
7693
7541
  "ele-1"
7694
7542
  ],
7695
- "constraint": [
7696
- {
7697
- "key": "ele-1",
7698
- "severity": "error",
7699
- "human": "All FHIR elements must have a @value or children",
7700
- "expression": "children().count() > id.count()",
7701
- "xpath": "@value|f:*|h:div"
7702
- }
7703
- ]
7543
+ "constraint": [ ]
7704
7544
  },
7705
7545
  {
7706
7546
  "id": "TriggerDefinition.id",
@@ -7909,15 +7749,7 @@
7909
7749
  "condition": [
7910
7750
  "ele-1"
7911
7751
  ],
7912
- "constraint": [
7913
- {
7914
- "key": "ele-1",
7915
- "severity": "error",
7916
- "human": "All FHIR elements must have a @value or children",
7917
- "expression": "children().count() > id.count()",
7918
- "xpath": "@value|f:*|h:div"
7919
- }
7920
- ]
7752
+ "constraint": [ ]
7921
7753
  },
7922
7754
  {
7923
7755
  "id": "Contributor.id",
@@ -8082,15 +7914,7 @@
8082
7914
  "condition": [
8083
7915
  "ele-1"
8084
7916
  ],
8085
- "constraint": [
8086
- {
8087
- "key": "ele-1",
8088
- "severity": "error",
8089
- "human": "All FHIR elements must have a @value or children",
8090
- "expression": "children().count() > id.count()",
8091
- "xpath": "@value|f:*|h:div"
8092
- }
8093
- ]
7917
+ "constraint": [ ]
8094
7918
  },
8095
7919
  {
8096
7920
  "id": "DataRequirement.id",
@@ -8563,15 +8387,7 @@
8563
8387
  "condition": [
8564
8388
  "ele-1"
8565
8389
  ],
8566
- "constraint": [
8567
- {
8568
- "key": "ele-1",
8569
- "severity": "error",
8570
- "human": "All FHIR elements must have a @value or children",
8571
- "expression": "children().count() > id.count()",
8572
- "xpath": "@value|f:*|h:div"
8573
- }
8574
- ]
8390
+ "constraint": [ ]
8575
8391
  },
8576
8392
  {
8577
8393
  "id": "ContactDetail.id",
@@ -8698,15 +8514,7 @@
8698
8514
  "condition": [
8699
8515
  "ele-1"
8700
8516
  ],
8701
- "constraint": [
8702
- {
8703
- "key": "ele-1",
8704
- "severity": "error",
8705
- "human": "All FHIR elements must have a @value or children",
8706
- "expression": "children().count() > id.count()",
8707
- "xpath": "@value|f:*|h:div"
8708
- }
8709
- ]
8517
+ "constraint": [ ]
8710
8518
  },
8711
8519
  {
8712
8520
  "id": "HumanName.id",
@@ -8970,13 +8778,6 @@
8970
8778
  "ele-1"
8971
8779
  ],
8972
8780
  "constraint": [
8973
- {
8974
- "key": "ele-1",
8975
- "severity": "error",
8976
- "human": "All FHIR elements must have a @value or children",
8977
- "expression": "children().count() > id.count()",
8978
- "xpath": "@value|f:*|h:div"
8979
- },
8980
8781
  {
8981
8782
  "key": "cpt-2",
8982
8783
  "severity": "error",
@@ -9228,15 +9029,7 @@
9228
9029
  "condition": [
9229
9030
  "ele-1"
9230
9031
  ],
9231
- "constraint": [
9232
- {
9233
- "key": "ele-1",
9234
- "severity": "error",
9235
- "human": "All FHIR elements must have a @value or children",
9236
- "expression": "children().count() > id.count()",
9237
- "xpath": "@value|f:*|h:div"
9238
- }
9239
- ]
9032
+ "constraint": [ ]
9240
9033
  },
9241
9034
  {
9242
9035
  "id": "UsageContext.id",
@@ -9535,15 +9328,7 @@
9535
9328
  "condition": [
9536
9329
  "ele-1"
9537
9330
  ],
9538
- "constraint": [
9539
- {
9540
- "key": "ele-1",
9541
- "severity": "error",
9542
- "human": "All FHIR elements must have a @value or children",
9543
- "expression": "children().count() > id.count()",
9544
- "xpath": "@value|f:*|h:div"
9545
- }
9546
- ]
9331
+ "constraint": [ ]
9547
9332
  },
9548
9333
  {
9549
9334
  "id": "Timing.id",
@@ -10242,13 +10027,6 @@
10242
10027
  "ele-1"
10243
10028
  ],
10244
10029
  "constraint": [
10245
- {
10246
- "key": "ele-1",
10247
- "severity": "error",
10248
- "human": "All FHIR elements must have a @value or children",
10249
- "expression": "children().count() > id.count()",
10250
- "xpath": "@value|f:*|h:div"
10251
- },
10252
10030
  {
10253
10031
  "key": "eld-2",
10254
10032
  "severity": "error",
@@ -13308,15 +13086,7 @@
13308
13086
  "condition": [
13309
13087
  "ele-1"
13310
13088
  ],
13311
- "constraint": [
13312
- {
13313
- "key": "ele-1",
13314
- "severity": "error",
13315
- "human": "All FHIR elements must have a @value or children",
13316
- "expression": "children().count() > id.count()",
13317
- "xpath": "@value|f:*|h:div"
13318
- }
13319
- ]
13089
+ "constraint": [ ]
13320
13090
  },
13321
13091
  {
13322
13092
  "id": "ParameterDefinition.id",
@@ -13600,13 +13370,6 @@
13600
13370
  "ele-1"
13601
13371
  ],
13602
13372
  "constraint": [
13603
- {
13604
- "key": "ele-1",
13605
- "severity": "error",
13606
- "human": "All FHIR elements must have a @value or children",
13607
- "expression": "children().count() > id.count()",
13608
- "xpath": "@value|f:*|h:div"
13609
- },
13610
13373
  {
13611
13374
  "key": "qty-3",
13612
13375
  "severity": "error",
data/fhir_models.gemspec CHANGED
@@ -7,9 +7,11 @@ Gem::Specification.new do |s|
7
7
  s.email = "jwalonoski@mitre.org"
8
8
  s.homepage = "https://github.com/fhir-crucible/fhir_models"
9
9
  s.authors = ["Jason Walonoski", "Andre Quina", "Michael O'Keefe"]
10
- s.version = '1.6.2'
10
+ s.version = '1.6.3'
11
11
  s.files = s.files = `git ls-files`.split("\n")
12
12
  s.add_development_dependency 'pry'
13
+ s.add_development_dependency 'minitest'
14
+ s.add_development_dependency 'test-unit'
13
15
  s.add_dependency 'rake', '>= 0.8.7'
14
16
  s.add_dependency 'nokogiri', '>= 1.6'
15
17
  s.add_dependency 'date_time_precision', '>= 0.8'
data/lib/bootstrap/xml.rb CHANGED
@@ -24,7 +24,7 @@ module FHIR
24
24
  # if hash contains resourceType
25
25
  # create a child node with the name==resourceType
26
26
  # fill that, and place the child under the above `node`
27
- if hash['resourceType']
27
+ if hash['resourceType'] && hash['resourceType'].is_a?(String)
28
28
  child_name = hash['resourceType']
29
29
  hash.delete('resourceType')
30
30
  child = hash_to_xml_node(child_name, hash, doc)
data/lib/fhir_ext/StructureDefinition.rb CHANGED
@@ -423,7 +423,7 @@ module FHIR
423
423
  nodes = get_json_nodes(json,path)
424
424
 
425
425
  # special filtering on extension urls
426
- extension_profile = element.type.find{|t|t.code=='Extension' && !t.profile.empty?}
426
+ extension_profile = element.type.find{|t|t.code=='Extension' && !t.profile.nil? && !t.profile.empty?}
427
427
  if extension_profile
428
428
  nodes.keep_if{|x| extension_profile.profile.include?(x['url']) }
429
429
  end
@@ -681,7 +681,7 @@ module FHIR
681
681
  matching_type-=1 if element.binding.strength=='required'
682
682
  end
683
683
  elsif valueset.nil?
684
- @errors << "#{element.path} has unknown ValueSet: '#{vsUri}'"
684
+ @warnings << "#{element.path} has unknown ValueSet: '#{vsUri}'"
685
685
  matching_type-=1 if element.binding.strength=='required'
686
686
  elsif !valueset.values.flatten.include?(value)
687
687
  message = "#{element.path} has invalid code '#{value}' from #{valueset}"
data/lib/fhir_models.rb CHANGED
@@ -1,6 +1,5 @@
1
1
  # Top level include file that brings in all the necessary code
2
2
  require 'bundler/setup'
3
- require 'rubygems'
4
3
  require 'yaml'
5
4
  require 'nokogiri'
6
5
  require 'date_time_precision'
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: fhir_models
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.6.2
4
+ version: 1.6.3
5
5
  platform: ruby
6
6
  authors:
7
7
  - Jason Walonoski
@@ -10,7 +10,7 @@ authors:
10
10
  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2016-08-24 00:00:00.000000000 Z
13
+ date: 2016-09-20 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: pry
@@ -26,6 +26,34 @@ dependencies:
26
26
  - - '>='
27
27
  - !ruby/object:Gem::Version
28
28
  version: '0'
29
+ - !ruby/object:Gem::Dependency
30
+ name: minitest
31
+ requirement: !ruby/object:Gem::Requirement
32
+ requirements:
33
+ - - '>='
34
+ - !ruby/object:Gem::Version
35
+ version: '0'
36
+ type: :development
37
+ prerelease: false
38
+ version_requirements: !ruby/object:Gem::Requirement
39
+ requirements:
40
+ - - '>='
41
+ - !ruby/object:Gem::Version
42
+ version: '0'
43
+ - !ruby/object:Gem::Dependency
44
+ name: test-unit
45
+ requirement: !ruby/object:Gem::Requirement
46
+ requirements:
47
+ - - '>='
48
+ - !ruby/object:Gem::Version
49
+ version: '0'
50
+ type: :development
51
+ prerelease: false
52
+ version_requirements: !ruby/object:Gem::Requirement
53
+ requirements:
54
+ - - '>='
55
+ - !ruby/object:Gem::Version
56
+ version: '0'
29
57
  - !ruby/object:Gem::Dependency
30
58
  name: rake
31
59
  requirement: !ruby/object:Gem::Requirement
@@ -112,7 +140,6 @@ files:
112
140
  - .simplecov
113
141
  - .travis.yml
114
142
  - Gemfile
115
- - Gemfile.lock
116
143
  - README.md
117
144
  - Rakefile
118
145
  - definitions/schema/account.xsd
data/Gemfile.lock DELETED
@@ -1,63 +0,0 @@
1
- PATH
2
- remote: .
3
- specs:
4
- fhir_models (1.6.1)
5
- bcp47 (>= 0.3)
6
- date_time_precision (>= 0.8)
7
- mime-types (>= 1.16, < 3)
8
- nokogiri (>= 1.6)
9
- rake (>= 0.8.7)
10
-
11
- GEM
12
- remote: http://rubygems.org/
13
- specs:
14
- ansi (1.5.0)
15
- awesome_print (1.7.0)
16
- bcp47 (0.3.3)
17
- i18n
18
- coderay (1.1.1)
19
- date_time_precision (0.8.1)
20
- docile (1.1.5)
21
- i18n (0.7.0)
22
- json (2.0.2)
23
- method_source (0.8.2)
24
- mime-types (2.99.2)
25
- mini_portile2 (2.1.0)
26
- minitest (4.7.5)
27
- nokogiri (1.6.8)
28
- mini_portile2 (~> 2.1.0)
29
- pkg-config (~> 1.1.7)
30
- nokogiri-diff (0.2.0)
31
- nokogiri (~> 1.5)
32
- tdiff (~> 0.3, >= 0.3.2)
33
- pkg-config (1.1.7)
34
- pry (0.10.4)
35
- coderay (~> 1.1.0)
36
- method_source (~> 0.8.1)
37
- slop (~> 3.4)
38
- rake (11.2.2)
39
- simplecov (0.12.0)
40
- docile (~> 1.1.0)
41
- json (>= 1.8, < 3)
42
- simplecov-html (~> 0.10.0)
43
- simplecov-html (0.10.0)
44
- slop (3.6.0)
45
- tdiff (0.3.3)
46
- turn (0.9.7)
47
- ansi
48
- minitest (~> 4)
49
-
50
- PLATFORMS
51
- ruby
52
-
53
- DEPENDENCIES
54
- awesome_print
55
- fhir_models!
56
- minitest (~> 4.0)
57
- nokogiri-diff
58
- pry
59
- simplecov
60
- turn
61
-
62
- BUNDLED WITH
63
- 1.12.5