fastq-factory 0.1.15 → 0.1.16
Sign up to get free protection for your applications and to get access to all the features.
- data/VERSION +1 -1
- data/fastq-factory.gemspec +1 -1
- data/lib/trim_and_correct.rb +2 -2
- metadata +2 -2
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.1.
|
1
|
+
0.1.16
|
data/fastq-factory.gemspec
CHANGED
data/lib/trim_and_correct.rb
CHANGED
@@ -34,8 +34,8 @@ def trim_and_correct_fastqs(sample_map, directory, forward_reads_suffix, forward
|
|
34
34
|
# cleanup and rename files
|
35
35
|
|
36
36
|
sample_map.each do |sample_file_prefix, sample_name|
|
37
|
-
delete_file_with_dependencies("#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}", "#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
|
38
|
-
delete_file_with_dependencies("#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}", "#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
|
37
|
+
delete_file_with_dependencies("#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}", "paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
|
38
|
+
delete_file_with_dependencies("#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}", "paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
|
39
39
|
delete_file_with_dependencies("orphaned_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}")
|
40
40
|
delete_file_with_dependencies("orphaned_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}")
|
41
41
|
if File.exists?("paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: fastq-factory
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.16
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -165,7 +165,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
165
165
|
version: '0'
|
166
166
|
segments:
|
167
167
|
- 0
|
168
|
-
hash:
|
168
|
+
hash: 794451463451040410
|
169
169
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
170
170
|
none: false
|
171
171
|
requirements:
|