fastq-factory 0.1.11 → 0.1.12
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- data/VERSION +1 -1
- data/fastq-factory.gemspec +2 -2
- data/lib/fastq-remove-orphans.pl +4 -4
- metadata +3 -3
data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.1.
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1
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+
0.1.12
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data/fastq-factory.gemspec
CHANGED
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@@ -5,11 +5,11 @@
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5
5
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6
6
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Gem::Specification.new do |s|
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7
7
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s.name = "fastq-factory"
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8
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-
s.version = "0.1.
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8
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+
s.version = "0.1.12"
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9
9
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10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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11
11
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s.authors = ["Anthony Underwood"]
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12
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-
s.date = "2012-09-
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12
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+
s.date = "2012-09-18"
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13
13
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s.description = "This tool can process fastq files, using fastq_quality_trimmer and quake to correct fastq files and then provide a quality asssessment of the data"
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14
14
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s.email = "anthony.underwood@hpa.org.uk"
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15
15
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s.executables = ["fastq-factory"]
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data/lib/fastq-remove-orphans.pl
CHANGED
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@@ -106,8 +106,8 @@ my $paired;
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106
106
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print STDERR "\nPrinting paired reads...\n";
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107
107
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for $ident (keys %sequences_1) {
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108
108
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if (exists $sequences_2{$ident}) {
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109
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-
print PAIRED1 "\@${ident} 1\n$sequences_1{$ident}\n\+${ident}1\n$qualities_1{$ident}\n";
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110
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-
print PAIRED2 "\@${ident} 2\n$sequences_2{$ident}\n\+${ident}2\n$qualities_2{$ident}\n";
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109
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+
print PAIRED1 "\@${ident} 1\n$sequences_1{$ident}\n\+${ident} 1\n$qualities_1{$ident}\n";
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110
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+
print PAIRED2 "\@${ident} 2\n$sequences_2{$ident}\n\+${ident} 2\n$qualities_2{$ident}\n";
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111
111
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delete $sequences_1{$ident};
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112
112
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delete $sequences_2{$ident};
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113
113
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$paired++;
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@@ -117,13 +117,13 @@ for $ident (keys %sequences_1) {
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117
117
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print STDERR "\nPrinting orphaned reads...\n";
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118
118
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my $orphaned_1;
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119
119
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for $ident (keys %sequences_1) {
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120
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-
print ORPHANED1 "\@${ident} 1\n$sequences_1{$ident}\n\+${ident}1\n$qualities_1{$ident}\n";
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120
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+
print ORPHANED1 "\@${ident} 1\n$sequences_1{$ident}\n\+${ident} 1\n$qualities_1{$ident}\n";
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121
121
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$orphaned_1++;
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122
122
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}
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123
123
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124
124
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my $orphaned_2;
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|
125
125
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for $ident (keys %sequences_2) {
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126
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-
print ORPHANED2 "\@${ident} 2\n$sequences_2{$ident}\n\+${ident}2\n$qualities_2{$ident}\n";
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126
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+
print ORPHANED2 "\@${ident} 2\n$sequences_2{$ident}\n\+${ident} 2\n$qualities_2{$ident}\n";
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127
127
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$orphaned_2++
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128
128
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}
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129
129
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: fastq-factory
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.12
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5
5
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prerelease:
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6
6
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platform: ruby
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7
7
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authors:
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@@ -9,7 +9,7 @@ authors:
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9
9
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autorequire:
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10
10
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bindir: bin
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11
11
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cert_chain: []
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12
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-
date: 2012-09-
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12
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+
date: 2012-09-18 00:00:00.000000000 Z
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13
13
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dependencies:
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14
14
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- !ruby/object:Gem::Dependency
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15
15
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name: trollop
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@@ -165,7 +165,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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165
165
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version: '0'
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166
166
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segments:
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|
167
167
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- 0
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168
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-
hash:
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|
168
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+
hash: 2878535993008211494
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|
169
169
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required_rubygems_version: !ruby/object:Gem::Requirement
|
|
170
170
|
none: false
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|
171
171
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requirements:
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