fasta_util 0.5.0 → 0.5.1

data/VERSION

@@ -1 +1 @@
-0.5.0
+0.5.1

data/bin/fasta_util

@@ -63,12 +63,12 @@ class FastaUtility < Thor
   def filter(filename)
     invoke :filecheck
     invoke :filecheck, [options.definitions_file]
-    requested_definitions = File.open(options.definitions_file).map{|definition| definition.strip} if options.definitions_file
+    requested_definitions = File.open(options.definitions_file).map{|definition| definition.strip} unless options.definitions_file == ''
     Bio::FlatFile.open(filename).each do |entry|
       passed = true
       passed &&= (entry.length >= options.length_cutoff)
       passed &&= (entry.definition.match(Regexp.new(options.defline_grep)))
-      passed &&= (requested_definitions.include? entry.definition)
+      passed &&= (requested_definitions.include? entry.definition) unless options.definitions_file == ''
       passed = !passed if options.inverse_match
       puts entry if passed
     end

data/fasta_util.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = %q{fasta_util}
-  s.version = "0.5.0"
+  s.version = "0.5.1"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["robsyme"]

metadata

@@ -2,7 +2,7 @@
 name: fasta_util
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.5.0
+  version: 0.5.1
 platform: ruby
 authors: 
 - robsyme
@@ -125,7 +125,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      hash: 221242491910546500
+      hash: 107780182399010435
       segments: 
       - 0
       version: "0"