family-reunion 0.2.0 → 0.2.1

data/VERSION

@@ -1 +1 @@
-0.2.0
+0.2.1

data/family-reunion.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = %q{family-reunion}
-  s.version = "0.2.0"
+  s.version = "0.2.1"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Dmitry Mozzherin", "David Shorthouse"]

data/lib/family-reunion/exact_matcher.rb

@@ -27,8 +27,8 @@ class FamilyReunion
       # Homonyms are treated separately, and are not matched by the algorithm,
       # they are excluded from valid_matches
       valid_matches.each do |name|
-        pn = @fr.primary_node.valid_names_hash[:name]
-        sn = @fr.secondary_node.valid_names_hash[:name]
+        pn = @fr.primary_node.valid_names_hash[name]
+        sn = @fr.secondary_node.valid_names_hash[name]
         primary_id = pn[:id].to_s.to_sym
         primary_path = pn[:path]
         primary_path_ids = pn[:path_ids]

data/lib/family-reunion/matcher_helper.rb

@@ -18,8 +18,8 @@ class FamilyReunion
           @fr.merges[primary_id][:matches][key] = val unless @fr.merges[primary_id][:matches].has_key?(key)
         end
       else
-        path = @fr.primary_node.ids_hash[i][:path]
-        path_ids = @fr.primary_node.ids_hash[i][:path_ids]     
+        path = @fr.primary_node.ids_hash[primary_id][:path]
+        path_ids = @fr.primary_node.ids_hash[primary_id][:path_ids]     
         @fr.merges[primary_id] = { :path => path, :path_ids => path_ids, :matches => secondary_id_matches, :nonmatches => {} }
       end
     end

data/spec/fixtures/matched_merges.json

@@ -1 +1 @@
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gracilis"],"path_ids":["hex100521","hex1023032","hex10358401"]}},"nonmatches":{}},"invasiveants:tid:1447":{"path":["Formicidae","Odontomachus","Odontomachus ruginodis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1446","invasiveants:tid:1447"],"matches":{"hex10355198":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Odontomachus","Odontomachus ruginodis"],"path_ids":["hex100521","hex1022896","hex10355198"]}},"nonmatches":{}},"invasiveants:tid:1468":{"path":["Formicidae","Plagiolepis","Plagiolepis alluaudi"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1467","invasiveants:tid:1468"],"matches":{"hex10354059":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Plagiolepis","Plagiolepis alluaudi"],"path_ids":["hex100521","hex1022869","hex10354059"]}},"nonmatches":{}},"invasiveants:tid:1419":{"path":["Formicidae","Hypoponera","Hypoponera punctatissima"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1417","invasiveants:tid:1419"],"matches":{"hex10357434":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Hypoponera","Hypoponera punctatissima"],"path_ids":["hex100521","hex1023001","hex10357434"]}},"nonmatches":{}},"invasiveants:tid:1418":{"path":["Formicidae","Hypoponera","Hypoponera opaciceps"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1417","invasiveants:tid:1418"],"matches":{"hex10357430":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Hypoponera","Hypoponera opaciceps"],"path_ids":["hex100521","hex1023001","hex10357430"]}},"nonmatches":{}},"invasiveants:tid:1415":{"path":["Formicidae","Gnamptogenys","Gnamptogenys porcata"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1414","invasiveants:tid:1415"],"matches":{"hex10358491":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Gnamptogenys","Gnamptogenys porcata"],"path_ids":["hex100521","hex1023036","hex10358491"]}},"nonmatches":{}},"invasiveants:tid:1416":{"path":["Formicidae","Gnamptogenys","Gnamptogenys triangularis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1414","invasiveants:tid:1416"],"matches":{"hex10358551":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Gnamptogenys","Gnamptogenys triangularis"],"path_ids":["hex100521","hex1023036","hex10358551"]}},"nonmatches":{}},"invasiveants:tid:1392":{"path":["Formicidae","Brachymyrmex","Brachymyrmex patagonicus"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1392"],"matches":{"hex10351300":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex patagonicus"],"path_ids":["hex100521","hex1022773","hex10351300"]}},"nonmatches":{}},"invasiveants:tid:1389":{"path":["Formicidae","Brachymyrmex","Brachymyrmex brevicornis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1389"],"matches":{"hex10351289":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex brevicornis"],"path_ids":["hex100521","hex1022773","hex10351289"]}},"nonmatches":{}},"invasiveants:tid:1391":{"path":["Formicidae","Brachymyrmex","Brachymyrmex obscurior"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1391"],"matches":{"hex10351309":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex obscurior"],"path_ids":["hex100521","hex1022773","hex10351309"]}},"nonmatches":{}},"invasiveants:tid:1390":{"path":["Formicidae","Brachymyrmex","Brachymyrmex minutus"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1390"],"matches":{"hex10351285":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex minutus"],"path_ids":["hex100521","hex1022773","hex10351285"]}},"nonmatches":{}},"invasiveants:tid:1475":{"path":["Formicidae","Pyramica","Pyramica gundlachi"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1475"],"matches":{"hex10357837":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica gundlachi"],"path_ids":["hex100521","hex1023019","hex10357837"]}},"nonmatches":{}},"invasiveants:tid:1478":{"path":["Formicidae","Pyramica","Pyramica membranifera"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1478"],"matches":{"hex10357759":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica membranifera"],"path_ids":["hex100521","hex1023019","hex10357759"]}},"nonmatches":{}},"invasiveants:tid:1476":{"path":["Formicidae","Pyramica","Pyramica hexamera"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1476"],"matches":{"hex10357766":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica hexamera"],"path_ids":["hex100521","hex1023019","hex10357766"]}},"nonmatches":{}},"invasiveants:tid:1477":{"path":["Formicidae","Pyramica","Pyramica margaritae"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1477"],"matches":{"hex10357857":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica margaritae"],"path_ids":["hex100521","hex1023019","hex10357857"]}},"nonmatches":{}},"invasiveants:tid:1474":{"path":["Formicidae","Pyramica","Pyramica eggersi"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1474"],"matches":{"hex10357716":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica eggersi"],"path_ids":["hex100521","hex1023019","hex10357716"]}},"nonmatches":{}},"invasiveants:tid:1436":{"path":["Formicidae","Myrmica","Myrmica rubra"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1435","invasiveants:tid:1436"],"matches":{"hex10358305":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmica","Myrmica rubra"],"path_ids":["hex100521","hex1023028","hex10358305"]}},"nonmatches":{}},"invasiveants:tid:1437":{"path":["Formicidae","Myrmica","Myrmica ruginodis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1435","invasiveants:tid:1437"],"matches":{"hex10358173":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmica","Myrmica ruginodis"],"path_ids":["hex100521","hex1023028","hex10358173"]}},"nonmatches":{}},"invasiveants:tid:1430":{"path":["Formicidae","Monomorium","Monomorium floricola"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1430"],"matches":{"hex10352512":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium floricola"],"path_ids":["hex100521","hex1022810","hex10352512"]}},"nonmatches":{}},"invasiveants:tid:1431":{"path":["Formicidae","Monomorium","Monomorium pharaonis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1431"],"matches":{"hex10352415":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium pharaonis"],"path_ids":["hex100521","hex1022810","hex10352415"]}},"nonmatches":{}},"invasiveants:tid:1428":{"path":["Formicidae","Monomorium","Monomorium destructor"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1428"],"matches":{"hex10352498":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium destructor"],"path_ids":["hex100521","hex1022810","hex10352498"]}},"nonmatches":{}},"invasiveants:tid:1429":{"path":["Formicidae","Monomorium","Monomorium ebeninum"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1429"],"matches":{"hex10352402":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium ebeninum"],"path_ids":["hex100521","hex1022810","hex10352402"]}},"nonmatches":{}},"invasiveants:tid:1434":{"path":["Formicidae","Myrmelachista","Myrmelachista ramulorum"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1433","invasiveants:tid:1434"],"matches":{"hex10351578":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmelachista","Myrmelachista ramulorum"],"path_ids":["hex100521","hex1022785","hex10351578"]}},"nonmatches":{}},"invasiveants:tid:1470":{"path":["Formicidae","Prionopelta","Prionopelta antillana"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1469","invasiveants:tid:1470"],"matches":{"hex10358678":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Prionopelta","Prionopelta antillana"],"path_ids":["hex100521","hex1023055","hex10358678"]}},"nonmatches":{}},"invasiveants:tid:1411":{"path":["Formicidae","Eurhopalothrix","Eurhopalothrix floridana"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1410","invasiveants:tid:1411"],"matches":{"hex10352902":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Eurhopalothrix","Eurhopalothrix floridana"],"path_ids":["hex100521","hex1022823","hex10352902"]}},"nonmatches":{}},"invasiveants:tid:1481":{"path":["Formicidae","Solenopsis","Solenopsis invicta"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1479","invasiveants:tid:1481"],"matches":{"hex10356720":{"merge_type":"exact_valid_to_synonym","path":["Formicidae","Solenopsis","Solenopsis wagneri"],"path_ids":["hex100521","hex1022959","hex10356720"]}},"nonmatches":{}},"invasiveants:tid:1491":{"path":["Formicidae","Tapinoma","Tapinoma melanocephalum"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1490","invasiveants:tid:1491"],"matches":{"hex10358019":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Formica","Formica nana"],"path_ids":["hex100521","hex1023020","hex10358019"]}},"nonmatches":{}},"invasiveants:tid:1492":{"path":["Formicidae","Tapinoma","Tapinoma sessile"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1490","invasiveants:tid:1492"],"matches":{"hex10358021":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Formica","Formica gracilis"],"path_ids":["hex100521","hex1023020","hex10358021"]}},"nonmatches":{}},"invasiveants:tid:1496":{"path":["Formicidae","Technomyrmex","Technomyrmex pallipes"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1493","invasiveants:tid:1496"],"matches":{"hex10353188":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex foreli"],"path_ids":["hex100521","hex1022839","hex10353188"]},"hex10353182":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex primroseae"],"path_ids":["hex100521","hex1022839","hex10353182"]},"hex10353170":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex brevicornis"],"path_ids":["hex100521","hex1022839","hex10353170"]},"hex10353199":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex atrichosus"],"path_ids":["hex100521","hex1022839","hex10353199"]}},"nonmatches":{}},"invasiveants:tid:1407":{"path":["Formicidae","Crematogaster","Crematogaster obscurata"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1406","invasiveants:tid:1407"],"matches":{"hex10349533":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Crematogaster","Crematogaster agnita"],"path_ids":["hex100521","hex1022726","hex10349533"]},"hex10758181":{"merge_type":"fuzzy_valid_to_synonym","path":["Formicidae","Trapeziopelta","Trapeziopelta diadela"],"path_ids":["hex100521","hex1057748","hex10758181"]},"hex10758108":{"merge_type":"fuzzy_synonym_to_valid","path":["Formicidae","Nothosphinctus","Nothosphinctus silaceus"],"path_ids":["hex100521","hex1057733","hex10758108"]}},"nonmatches":{}},"invasiveants:tid:1453":{"path":["Formicidae","Pachycondlya","Pachycondlya solitaria"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1452","invasiveants:tid:1453"],"matches":{"hex10354887":{"merge_type":"fuzzy_valid_to_valid","path":["Formicidae","Pachycondyla","Pachycondyla solitaria"],"path_ids":["hex100521","hex1022882","hex10354887"]}},"nonmatches":{}}}

data/spec/fuzzy_matcher_spec.rb

@@ -26,7 +26,7 @@ describe FamilyReunion::FuzzyMatcher do
   it "should be able to add matches to merges object" do
     @fr.stubs(:merges => {})
     @fm.merge
-    @fr.merges.should == {:"invasiveants:tid:1453"=>{:matches=>{:hex10354887=>{:merge_type=>:fuzzy_valid_to_valid, :path=>["Formicidae", "Pachycondyla", "Pachycondyla solitaria"], :path_ids=>["hex100521", "hex1022882", "hex10354887"]}}, :nonmatches=>{}}, :"invasiveants:tid:1407"=>{:matches=>{:hex10758181=>{:merge_type=>:fuzzy_valid_to_synonym, :path=>["Formicidae", "Trapeziopelta", "Trapeziopelta diadela"], :path_ids=>["hex100521", "hex1057748", "hex10758181"]}, :hex10758108=>{:merge_type=>:fuzzy_synonym_to_valid, :path=>["Formicidae", "Nothosphinctus", "Nothosphinctus silaceus"], :path_ids=>["hex100521", "hex1057733", "hex10758108"]}}, :nonmatches=>{}}, :"invasiveants:tid:1397"=>{:matches=>{:hex10357934=>{:merge_type=>:fuzzy_synonym_to_synonym, :path=>["Formicidae", "Formica", "Formica lavateri"], :path_ids=>["hex100521", "hex1023020", "hex10357934"]}}, :nonmatches=>{}}}
+    @fr.merges.should == {:"invasiveants:tid:1453"=>{:path=>["Formicidae", "Pachycondlya", "Pachycondlya solitaria"], :path_ids=>["invasiveants:tid:1381", "invasiveants:tid:1452", "invasiveants:tid:1453"], :matches=>{:hex10354887=>{:merge_type=>:fuzzy_valid_to_valid, :path=>["Formicidae", "Pachycondyla", "Pachycondyla solitaria"], :path_ids=>["hex100521", "hex1022882", "hex10354887"]}}, :nonmatches=>{}}, :"invasiveants:tid:1407"=>{:path=>["Formicidae", "Crematogaster", "Crematogaster obscurata"], :path_ids=>["invasiveants:tid:1381", "invasiveants:tid:1406", "invasiveants:tid:1407"], :matches=>{:hex10758181=>{:merge_type=>:fuzzy_valid_to_synonym, :path=>["Formicidae", "Trapeziopelta", "Trapeziopelta diadela"], :path_ids=>["hex100521", "hex1057748", "hex10758181"]}, :hex10758108=>{:merge_type=>:fuzzy_synonym_to_valid, :path=>["Formicidae", "Nothosphinctus", "Nothosphinctus silaceus"], :path_ids=>["hex100521", "hex1057733", "hex10758108"]}}, :nonmatches=>{}}, :"invasiveants:tid:1397"=>{:path=>["Formicidae", "Camponotus", "Camponotus sexguttatus"], :path_ids=>["invasiveants:tid:1381", "invasiveants:tid:1393", "invasiveants:tid:1397"], :matches=>{:hex10357934=>{:merge_type=>:fuzzy_synonym_to_synonym, :path=>["Formicidae", "Formica", "Formica lavateri"], :path_ids=>["hex100521", "hex1023020", "hex10357934"]}}, :nonmatches=>{}}} 
   end
 
 end

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 0
   - 2
-  - 0
-  version: 0.2.0
+  - 1
+  version: 0.2.1
 platform: ruby
 authors: 
 - Dmitry Mozzherin
@@ -233,7 +233,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      hash: -402388446761307485
+      hash: 1781090361424484395
       segments: 
       - 0
       version: "0"