extraction_token_util 0.0.1.pre.alpha.pre.4

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ SHA256:
3
+ metadata.gz: a8c36c110cc5d6af1a5e890a61c0d6c5d2b3b25d3a961cac7bb346cc51433d71
4
+ data.tar.gz: 3ccc5f483ff4ea5dc5dbd3fefbfab39f23a55f7abdc42cd398b0cb61da8ede77
5
+ SHA512:
6
+ metadata.gz: 80ab69ab510284292ecea5d026427b0941da44a071816058df70562ae752f08b3c0788bb4ea6cdbb0360802ad491c48be2c413585d5c16e2e90d753cbacaeb9d
7
+ data.tar.gz: 83769f3430332acf1fecc524b1f7c66b70805d72a7948835c2143ee6e09ae96aeeb0091760aac425739aa42c1ea9682aa188b15a20ab28154d2cb950e47a7fb1
data/LICENSE ADDED
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2020 Eduardo Martín Rojo
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
data/README.md ADDED
@@ -0,0 +1,2 @@
1
+ # extraction-token-util
2
+ Set of Ruby methods to provide lexical support to common formats in use in Extraction Lims
@@ -0,0 +1,85 @@
1
+ module ExtractionTokenUtil
2
+ def self.UUID_REGEXP
3
+ /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/
4
+ end
5
+
6
+ def self.fluidx_barcode_prefix
7
+ 'F'
8
+ end
9
+
10
+ def self.WILDCARD_REGEXP
11
+ /\?\w*/
12
+ end
13
+
14
+ def self.LOCATION_REGEXP
15
+ /^([A-H])(\d{1,2})$/
16
+ end
17
+
18
+ def self.is_uuid?(str)
19
+ str.kind_of?(String) && !str.match(ExtractionTokenUtil.UUID_REGEXP).nil?
20
+ end
21
+
22
+ def self.quote_if_uuid(str)
23
+ return quote(str) if is_uuid?(str)
24
+ return str
25
+ end
26
+
27
+ def self.is_valid_fluidx_barcode?(barcode)
28
+ barcode.to_s.start_with?(fluidx_barcode_prefix)
29
+ end
30
+
31
+ def self.uuid(str)
32
+ str.match(ExtractionTokenUtil.UUID_REGEXP)[0]
33
+ end
34
+
35
+ def self.is_wildcard?(str)
36
+ str.kind_of?(String) && !str.match(ExtractionTokenUtil.WILDCARD_REGEXP).nil?
37
+ end
38
+
39
+ def self.kind_of_asset_id?(str)
40
+ !!(str.kind_of?(String) && (is_wildcard?(str) || is_uuid?(str)))
41
+ end
42
+
43
+ def self.to_asset_group_name(wildcard)
44
+ return wildcard if wildcard.nil?
45
+ wildcard.gsub('?', '')
46
+ end
47
+
48
+ def self.generate_positions(letters, columns)
49
+ size=letters.size * columns.size
50
+ location_for_position = size.times.map do |i|
51
+ "#{letters[(i%letters.length).floor]}#{pad((columns[(i/letters.length).floor]).to_s,'0',2)}"
52
+ end
53
+ end
54
+
55
+ def self.pad(str,chr,size)
56
+ "#{(size-str.size).times.map{chr}.join('')}#{str}"
57
+ end
58
+
59
+ def self.unpad_location(location)
60
+ return location unless location
61
+ loc = location.match(/(\w)(0*)(\d*)/)
62
+ loc[1]+loc[3]
63
+ end
64
+
65
+ def self.pad_location(location)
66
+ return location unless location
67
+ parts = location.match(ExtractionTokenUtil.LOCATION_REGEXP)
68
+ return nil if parts.length == 0
69
+ letter = parts[1]
70
+ number = parts[2]
71
+ number = ExtractionTokenUtil.pad(number,"0",2) unless number.length == 2
72
+ "#{letter}#{number}"
73
+ end
74
+
75
+ def self.quote(str)
76
+ return str unless str
77
+ "\"#{str}\""
78
+ end
79
+
80
+ def self.unquote(str)
81
+ return str unless str
82
+ str.gsub(/\"/,"")
83
+ end
84
+
85
+ end
metadata ADDED
@@ -0,0 +1,60 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: extraction_token_util
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.0.1.pre.alpha.pre.4
5
+ platform: ruby
6
+ authors:
7
+ - Eduardo Martin Rojo
8
+ autorequire:
9
+ bindir: bin
10
+ cert_chain: []
11
+ date: 2020-02-22 00:00:00.000000000 Z
12
+ dependencies:
13
+ - !ruby/object:Gem::Dependency
14
+ name: rspec
15
+ requirement: !ruby/object:Gem::Requirement
16
+ requirements:
17
+ - - ">="
18
+ - !ruby/object:Gem::Version
19
+ version: '0'
20
+ type: :development
21
+ prerelease: false
22
+ version_requirements: !ruby/object:Gem::Requirement
23
+ requirements:
24
+ - - ">="
25
+ - !ruby/object:Gem::Version
26
+ version: '0'
27
+ description:
28
+ email:
29
+ executables: []
30
+ extensions: []
31
+ extra_rdoc_files: []
32
+ files:
33
+ - LICENSE
34
+ - README.md
35
+ - lib/extraction_token_util.rb
36
+ homepage:
37
+ licenses: []
38
+ metadata: {}
39
+ post_install_message:
40
+ rdoc_options: []
41
+ require_paths:
42
+ - lib
43
+ required_ruby_version: !ruby/object:Gem::Requirement
44
+ requirements:
45
+ - - ">="
46
+ - !ruby/object:Gem::Version
47
+ version: '0'
48
+ required_rubygems_version: !ruby/object:Gem::Requirement
49
+ requirements:
50
+ - - ">"
51
+ - !ruby/object:Gem::Version
52
+ version: 1.3.1
53
+ requirements: []
54
+ rubyforge_project:
55
+ rubygems_version: 2.7.7
56
+ signing_key:
57
+ specification_version: 4
58
+ summary: Set of Ruby methods to provide lexical support to common formats in use in
59
+ Extraction Lims
60
+ test_files: []