entrez 0.0.1
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- data/.gitignore +5 -0
- data/.rvmrc +1 -0
- data/Gemfile +4 -0
- data/Rakefile +2 -0
- data/entrez.gemspec +25 -0
- data/lib/entrez.rb +17 -0
- data/lib/entrez/version.rb +3 -0
- data/spec/entrez_spec.rb +15 -0
- data/spec/spec_helper.rb +10 -0
- data/spec/support/fixtures/efetch.xml +246 -0
- data/spec/support/macros.rb +7 -0
- metadata +105 -0
data/.rvmrc
ADDED
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@@ -0,0 +1 @@
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1
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+
rvm use ruby-1.9.2-p0@entrez
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data/Gemfile
ADDED
data/Rakefile
ADDED
data/entrez.gemspec
ADDED
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@@ -0,0 +1,25 @@
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1
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+
# -*- encoding: utf-8 -*-
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2
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+
$:.push File.expand_path("../lib", __FILE__)
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3
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+
require "entrez/version"
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4
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+
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5
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Gem::Specification.new do |s|
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6
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s.name = "entrez"
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7
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+
s.version = Entrez::VERSION
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8
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+
s.platform = Gem::Platform::RUBY
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9
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+
s.authors = ["Jared Ning"]
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10
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+
s.email = ["jared@redningja.com"]
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11
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+
s.homepage = "https://github.com/ordinaryzelig/entrez"
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12
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s.summary = %q{HTTP requests to Entrez E-utilities}
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13
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+
s.description = %q{Simple API for HTTP requests to Entrez E-utilities}
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14
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+
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15
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+
s.rubyforge_project = "entrez"
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16
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+
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17
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+
s.files = `git ls-files`.split("\n")
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18
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+
s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
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19
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+
s.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
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20
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+
s.require_paths = ["lib"]
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21
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+
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22
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+
s.add_runtime_dependency 'httparty' # Written with version 0.7.3.
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23
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s.add_development_dependency 'rspec', '2.4.0'
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24
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+
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25
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end
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data/lib/entrez.rb
ADDED
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@@ -0,0 +1,17 @@
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1
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+
require 'httparty'
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2
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+
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3
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class Entrez
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4
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+
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5
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include HTTParty
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6
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base_uri 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'
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7
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default_params tool: 'ruby', email: (ENV['ENTREZ_EMAIL'] || raise('please set ENTREZ_EMAIL environment variable'))
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8
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+
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9
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+
class << self
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10
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+
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11
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+
def efetch(db, params = {})
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12
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get '/efetch.fcgi', :query => {db: db}.merge(params)
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13
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+
end
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14
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+
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15
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+
end
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16
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+
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17
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+
end
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data/spec/entrez_spec.rb
ADDED
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@@ -0,0 +1,15 @@
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1
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+
require 'spec_helper'
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2
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+
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3
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describe Entrez do
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4
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5
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it 'should have default params for tool and email' do
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6
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Entrez.default_params[:tool].should eq('ruby')
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7
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Entrez.default_params[:email].should_not be_nil
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8
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end
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9
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+
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10
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it 'should efetch results' do
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11
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rs_number = 9268480.to_s
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12
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Entrez.efetch('snp', {id: rs_number, retmode: 'xml'}).should eq(file_fixture('efetch.xml'))
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13
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+
end
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14
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+
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15
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end
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data/spec/spec_helper.rb
ADDED
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@@ -0,0 +1,10 @@
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1
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+
require 'pathname'
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2
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+
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3
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require File.join(Pathname(__FILE__).dirname.expand_path, '../lib/entrez')
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4
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+
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5
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# require support .rb files.
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6
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Dir[File.expand_path("../support/**/*.rb", __FILE__)].each {|f| require f}
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7
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+
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8
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RSpec.configure do |config|
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9
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config.include(Macros)
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10
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end
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@@ -0,0 +1,246 @@
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1
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+
<?xml version="1.0"?>
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2
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<ExchangeSet xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3
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xmlns="http://www.ncbi.nlm.nih.gov/SNP/docsum"
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4
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+
xsi:schemaLocation="http://www.ncbi.nlm.nih.gov/SNP/docsum
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5
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ftp://ftp.ncbi.nlm.nih.gov/snp/specs/docsum_3.1.xsd"><SourceDatabase taxId="0"
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6
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organism=""/>
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7
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+
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8
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9
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10
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<Rs rsId="9268480" snpClass="snp" snpType="notwithdrawn" molType="genomic" genotype="true" bitField="050368000301050503020100" taxId="9606">
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11
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+
<Het type="est" value="0.306968957185745" stdError="0.243591338396072"/>
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12
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+
<Validation byCluster="true" byFrequency="true"></Validation>
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13
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+
<Create build="118" date="2003-10-31 16:50"/>
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14
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+
<Update build="132" date="2011-01-04 14:46"/>
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15
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+
<Sequence exemplarSs="12693244" ancestralAllele="C">
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16
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+
<Seq5>CCAGTTTAGTCTTCAGATGATTACAGTTTCTAGAATTTTATTGCATTTCTCAGAATTCTAATAACACACTGTGAAACAATGAGCCTTTTGTAAAATATGTAGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
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|
17
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+
<Observed>C/T</Observed>
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18
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+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGTCCATTCACTTTTAAAGAAGCTGTTAAATAGAGTGGACAAAACACAATGAAAGAATCAAAATGGAACCAATAATGTCATCTCTAAGAACAGCTCCATTGGA</Seq3>
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19
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+
</Sequence>
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20
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+
<Ss ssId="12693244" handle="SI_MHC_SNP" batchId="30080" locSnpId="AL662796.6_71437_CT" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="118" methodClass="sequence" validated="by-cluster">
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21
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+
<Sequence>
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22
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+
<Seq5>CCAGTTTAGTCTTCAGATGATTACAGTTTCTAGAATTTTATTGCATTTCTCAGAATTCTAATAACACACTGTGAAACAATGAGCCTTTTGTAAAATATGTAGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
23
|
+
<Observed>C/T</Observed>
|
|
24
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGTCCATTCACTTTTAAAGAAGCTGTTAAATAGAGTGGACAAAACACAATGAAAGAATCAAAATGGAACCAATAATGTCATCTCTAAGAACAGCTCCATTGGA</Seq3>
|
|
25
|
+
</Sequence>
|
|
26
|
+
</Ss>
|
|
27
|
+
<Ss ssId="23138294" handle="FHCRC" batchId="11352" locSnpId="JF16_7049" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="126" methodClass="unknown" validated="by-frequency">
|
|
28
|
+
<Sequence>
|
|
29
|
+
<Seq5>TTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
30
|
+
<Observed>C/T</Observed>
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|
31
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGT</Seq3>
|
|
32
|
+
</Sequence>
|
|
33
|
+
</Ss>
|
|
34
|
+
<Ss ssId="24650851" handle="PERLEGEN" batchId="12311" locSnpId="afd0292430" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="123" methodClass="hybridize" validated="by-cluster">
|
|
35
|
+
<Sequence>
|
|
36
|
+
<Seq5>TTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
37
|
+
<Observed>C/T</Observed>
|
|
38
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGT</Seq3>
|
|
39
|
+
</Sequence>
|
|
40
|
+
</Ss>
|
|
41
|
+
<Ss ssId="38346936" handle="PULMONOLOGYMSSM" batchId="18500" locSnpId="G16043A" subSnpClass="snp" orient="reverse" strand="top" molType="genomic" buildId="126" methodClass="unknown" validated="by-frequency">
|
|
42
|
+
<Sequence>
|
|
43
|
+
<Seq5>TCGGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCA</Seq5>
|
|
44
|
+
<Observed>A/G</Observed>
|
|
45
|
+
<Seq3>GAGGCCAGTTTGGATCTGAAGGTGGTAAGTAAGAATTCTAGATAGATATT</Seq3>
|
|
46
|
+
</Sequence>
|
|
47
|
+
</Ss>
|
|
48
|
+
<Ss ssId="44707181" handle="ABI" batchId="18990" locSnpId="hCV2488470" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="126" methodClass="unknown" linkoutUrl="http://myscience.appliedbiosystems.com/servlet/com.celera.web.myab.servlets.MyscienceGateway?source=dbSNP&resource=genotypingAssay&ap2=Celera+SNP&ap1=hCV2488470">
|
|
49
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+
<Sequence>
|
|
50
|
+
<Seq5>AGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACCTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
51
|
+
<Observed>C/T</Observed>
|
|
52
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGT</Seq3>
|
|
53
|
+
</Sequence>
|
|
54
|
+
</Ss>
|
|
55
|
+
<Ss ssId="52083135" handle="SI_EXO" batchId="30185" locSnpId="NT_007592.14_23222094" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="127" methodClass="unknown">
|
|
56
|
+
<Sequence>
|
|
57
|
+
<Seq5>CCAGTTTAGTCTTCAGATGATTACAGTTTCTAGAATTTTATTGCATTTCTCAGAATTCTAATAACACACTGTGAAACAATGAGCCTTTTGTAAAATATGTAGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
58
|
+
<Observed>C/T</Observed>
|
|
59
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGTCCATTCACTTTTAAAGAAGCTGTTAAATAGAGTGGACAAAACACAATGAAAGAATCAAAATGGAACCAATAATGTCATCTCTAAGAACAGCTCCATTGGA</Seq3>
|
|
60
|
+
</Sequence>
|
|
61
|
+
</Ss>
|
|
62
|
+
<Ss ssId="65847636" handle="KRIBB_YJKIM" batchId="33716" locSnpId="KHS23433" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="127" methodClass="other" validated="by-cluster">
|
|
63
|
+
<Sequence>
|
|
64
|
+
<Seq5>AGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
65
|
+
<Observed>C/T</Observed>
|
|
66
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGT</Seq3>
|
|
67
|
+
</Sequence>
|
|
68
|
+
</Ss>
|
|
69
|
+
<Ss ssId="66383197" handle="AFFY" batchId="33767" locSnpId="SNP_A-2047476" subSnpClass="snp" orient="reverse" strand="top" molType="genomic" buildId="127" methodClass="hybridize" validated="by-cluster" linkoutUrl="http://www.affymetrix.com/support/technical/byproduct.affx?product=100kSNP_A-2047476">
|
|
70
|
+
<Sequence>
|
|
71
|
+
<Seq5>AAGATGATGTCTACCA</Seq5>
|
|
72
|
+
<Observed>A/G</Observed>
|
|
73
|
+
<Seq3>GAGGCCAGTTTGGATC</Seq3>
|
|
74
|
+
</Sequence>
|
|
75
|
+
</Ss>
|
|
76
|
+
<Ss ssId="68972045" handle="PERLEGEN" batchId="38687" locSnpId="PGP00292430" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="127" methodClass="hybridize" validated="by-cluster">
|
|
77
|
+
<Sequence>
|
|
78
|
+
<Seq5>GGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
79
|
+
<Observed>C/T</Observed>
|
|
80
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGA</Seq3>
|
|
81
|
+
</Sequence>
|
|
82
|
+
</Ss>
|
|
83
|
+
<Ss ssId="76118578" handle="AFFY" batchId="52074" locSnpId="AFFY_6_1M_SNP_A-2047476" subSnpClass="snp" orient="reverse" strand="top" molType="genomic" buildId="129" methodClass="hybridize" validated="by-submitter">
|
|
84
|
+
<Sequence>
|
|
85
|
+
<Seq5>AAGATGATGTCTACCA</Seq5>
|
|
86
|
+
<Observed>A/G</Observed>
|
|
87
|
+
<Seq3>GAGGCCAGTTTGGATC</Seq3>
|
|
88
|
+
</Sequence>
|
|
89
|
+
</Ss>
|
|
90
|
+
<Ss ssId="82555304" handle="KRIBB_YJKIM" batchId="52429" locSnpId="KHS279420" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="130" methodClass="hybridize" validated="by-submitter">
|
|
91
|
+
<Sequence>
|
|
92
|
+
<Seq5>TTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
93
|
+
<Observed>C/T</Observed>
|
|
94
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGT</Seq3>
|
|
95
|
+
</Sequence>
|
|
96
|
+
</Ss>
|
|
97
|
+
<Ss ssId="86242140" handle="CORNELL" batchId="58444" locSnpId="hCV2488470" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="129" methodClass="unknown">
|
|
98
|
+
<Sequence>
|
|
99
|
+
<Seq5>AATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
100
|
+
<Observed>C/T</Observed>
|
|
101
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGA</Seq3>
|
|
102
|
+
</Sequence>
|
|
103
|
+
</Ss>
|
|
104
|
+
<Ss ssId="93437732" handle="BCMHGSC_JDW" batchId="59658" locSnpId="JWB-2121515" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="129" methodClass="computed">
|
|
105
|
+
<Sequence>
|
|
106
|
+
<Seq5>GGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
107
|
+
<Observed>C/T</Observed>
|
|
108
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAAC</Seq3>
|
|
109
|
+
</Sequence>
|
|
110
|
+
</Ss>
|
|
111
|
+
<Ss ssId="98487577" handle="HUMANGENOME_JCVI" batchId="60080" locSnpId="1103652828650" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="130" methodClass="sequence" validated="by-submitter" linkoutUrl="http://huref.jcvi.org/browse.html?search=1103652828650">
|
|
112
|
+
<Sequence>
|
|
113
|
+
<Seq5>GGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACCTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
114
|
+
<Observed>C/T</Observed>
|
|
115
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGCACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAAC</Seq3>
|
|
116
|
+
</Sequence>
|
|
117
|
+
</Ss>
|
|
118
|
+
<Ss ssId="104297553" handle="BGI" batchId="856429" locSnpId="BGI_rs9268480" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="unknown">
|
|
119
|
+
<Sequence>
|
|
120
|
+
<Seq5>TTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACYTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
121
|
+
<Observed>C/T</Observed>
|
|
122
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGT</Seq3>
|
|
123
|
+
</Sequence>
|
|
124
|
+
</Ss>
|
|
125
|
+
<Ss ssId="133671803" handle="ENSEMBL" batchId="856818" locSnpId="ENSSNP3072269" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="computed">
|
|
126
|
+
<Sequence>
|
|
127
|
+
<Seq5>ATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
128
|
+
<Observed>C/T</Observed>
|
|
129
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTC</Seq3>
|
|
130
|
+
</Sequence>
|
|
131
|
+
</Ss>
|
|
132
|
+
<Ss ssId="144248004" handle="ENSEMBL" batchId="856818" locSnpId="ENSSNP13882478" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="computed">
|
|
133
|
+
<Sequence>
|
|
134
|
+
<Seq5>ATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
135
|
+
<Observed>C/T</Observed>
|
|
136
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTC</Seq3>
|
|
137
|
+
</Sequence>
|
|
138
|
+
</Ss>
|
|
139
|
+
<Ss ssId="156753178" handle="GMI" batchId="1048915" locSnpId="GMI_SNP_77301931" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="sequence" validated="by-submitter">
|
|
140
|
+
<Sequence>
|
|
141
|
+
<Seq5>TTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
142
|
+
<Observed>C/T</Observed>
|
|
143
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGT</Seq3>
|
|
144
|
+
</Sequence>
|
|
145
|
+
</Ss>
|
|
146
|
+
<Ss ssId="159712195" handle="SEATTLESEQ" batchId="1048973" locSnpId="BTNL2-32471822" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="unknown">
|
|
147
|
+
<Sequence>
|
|
148
|
+
<Seq5>AATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
149
|
+
<Observed>C/T</Observed>
|
|
150
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGA</Seq3>
|
|
151
|
+
</Sequence>
|
|
152
|
+
</Ss>
|
|
153
|
+
<Ss ssId="160970526" handle="ILLUMINA" batchId="1049033" locSnpId="HumanOmni1-Quad_v1-0_B_rs9268480-128_B_F_1561716334" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="131" methodClass="hybridize" validated="by-submitter">
|
|
154
|
+
<Sequence>
|
|
155
|
+
<Seq5>TTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
156
|
+
<Observed>C/T</Observed>
|
|
157
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCA</Seq3>
|
|
158
|
+
</Sequence>
|
|
159
|
+
</Ss>
|
|
160
|
+
<Ss ssId="162203174" handle="COMPLETE_GENOMICS" batchId="1049290" locSnpId="NA07022_36_chr6_32471822" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="132" methodClass="sequence" validated="by-submitter">
|
|
161
|
+
<Sequence>
|
|
162
|
+
<Seq5>GGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
163
|
+
<Observed>C/T</Observed>
|
|
164
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAAC</Seq3>
|
|
165
|
+
</Sequence>
|
|
166
|
+
</Ss>
|
|
167
|
+
<Ss ssId="172560055" handle="AFFY" batchId="1049350" locSnpId="GenomeWideSNP_5_SNP_A-2047476" subSnpClass="snp" orient="reverse" strand="top" molType="genomic" buildId="132" methodClass="hybridize" validated="by-submitter">
|
|
168
|
+
<Sequence>
|
|
169
|
+
<Seq5>AAGATGATGTCTACCA</Seq5>
|
|
170
|
+
<Observed>A/G</Observed>
|
|
171
|
+
<Seq3>GAGGCCAGTTTGGATC</Seq3>
|
|
172
|
+
</Sequence>
|
|
173
|
+
</Ss>
|
|
174
|
+
<Ss ssId="201632426" handle="BUSHMAN" batchId="1050084" locSnpId="BUSHMAN-chr6-32471821" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="132" methodClass="unknown">
|
|
175
|
+
<Sequence>
|
|
176
|
+
<Seq5>TTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
177
|
+
<Observed>C/T</Observed>
|
|
178
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCG</Seq3>
|
|
179
|
+
</Sequence>
|
|
180
|
+
</Ss>
|
|
181
|
+
<Ss ssId="207457298" handle="BCM-HGSC-SUB" batchId="1050312" locSnpId="BCM_CMT_1011-1284727" subSnpClass="snp" orient="forward" strand="bottom" molType="genomic" buildId="132" methodClass="sequence" validated="by-submitter">
|
|
182
|
+
<Sequence>
|
|
183
|
+
<Seq5>GGAAAAGATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGTGGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTGATATAAATTTGATGATGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACTTACCACCTTCAGATCCAAACTGGCCTC</Seq5>
|
|
184
|
+
<Observed>C/T</Observed>
|
|
185
|
+
<Seq3>TGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGTACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAAC</Seq3>
|
|
186
|
+
</Sequence>
|
|
187
|
+
</Ss>
|
|
188
|
+
<Assembly dbSnpBuild="132" genomeBuild="37_1" groupLabel="Celera" current="true">
|
|
189
|
+
<Component componentType="contig" ctgId="88999178" accession="NW_923073.1" name="NW_923073.1" chromosome="6" start="28535679" end="58908290" orientation="fwd" gi="88999178" groupTerm="Celera" contigLabel="Celera">
|
|
190
|
+
<MapLoc asnFrom="5394909" asnTo="5394909" locType="exact" alnQuality="0.998325" orient="forward" physMapInt="33930588" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="5394908" rightContigNeighborPos="5394910" numberOfMismatches="2" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
191
|
+
</Component>
|
|
192
|
+
<SnpStat mapWeight="unique-in-contig" chromCount="1" placedContigCount="1" unplacedContigCount="0" seqlocCount="1" hapCount="0"/>
|
|
193
|
+
</Assembly>
|
|
194
|
+
<Assembly dbSnpBuild="132" genomeBuild="37_1" groupLabel="GRCh37" current="true" reference="true">
|
|
195
|
+
<Component componentType="contig" ctgId="224514668" accession="NT_007592.15" name="NT_007592.15" chromosome="6" start="60000" end="58780165" orientation="fwd" gi="224514668" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
196
|
+
<MapLoc asnFrom="32303843" asnTo="32303843" locType="exact" alnQuality="1" orient="forward" physMapInt="32363843" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="32303842" rightContigNeighborPos="32303844" numberOfMismatches="1" numberOfDeletions="0" numberOfInsertions="0">
|
|
197
|
+
<FxnSet geneId="56244" symbol="BTNL2" mrnaAcc="NM_019602" mrnaVer="1" protAcc="NP_062548" protVer="1" fxnClass="coding-synonymous" readingFrame="3" allele="A" residue="Q" aaPosition="349"/>
|
|
198
|
+
<FxnSet geneId="56244" symbol="BTNL2" mrnaAcc="NM_019602" mrnaVer="1" protAcc="NP_062548" protVer="1" fxnClass="reference" readingFrame="3" allele="G" residue="Q" aaPosition="349"/>
|
|
199
|
+
</MapLoc>
|
|
200
|
+
</Component>
|
|
201
|
+
<Component componentType="contig" ctgId="224515576" accession="NT_167244.1" name="NT_167244.1" chromosome="6" orientation="fwd" gi="224515576" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
202
|
+
<MapLoc asnFrom="3678213" asnTo="3678213" locType="exact" alnQuality="1" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3678212" rightContigNeighborPos="3678214" numberOfMismatches="1" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
203
|
+
</Component>
|
|
204
|
+
<Component componentType="contig" ctgId="224515577" accession="NT_113891.2" name="NT_113891.2" chromosome="6" orientation="fwd" gi="224515577" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
205
|
+
<MapLoc asnFrom="3834264" asnTo="3834264" locType="exact" alnQuality="1" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3834263" rightContigNeighborPos="3834265" numberOfMismatches="1" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
206
|
+
</Component>
|
|
207
|
+
<Component componentType="contig" ctgId="224515578" accession="NT_167245.1" name="NT_167245.1" chromosome="6" orientation="fwd" gi="224515578" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
208
|
+
<MapLoc asnFrom="3642742" asnTo="3642742" locType="exact" alnQuality="1" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3642741" rightContigNeighborPos="3642743" numberOfMismatches="1" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
209
|
+
</Component>
|
|
210
|
+
<Component componentType="contig" ctgId="224515579" accession="NT_167246.1" name="NT_167246.1" chromosome="6" orientation="fwd" gi="224515579" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
211
|
+
<MapLoc asnFrom="3706679" asnTo="3706679" locType="exact" alnQuality="0.993719" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3706678" rightContigNeighborPos="3706680" numberOfMismatches="6" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
212
|
+
</Component>
|
|
213
|
+
<Component componentType="contig" ctgId="224515580" accession="NT_167247.1" name="NT_167247.1" chromosome="6" orientation="fwd" gi="224515580" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
214
|
+
<MapLoc asnFrom="3743401" asnTo="3743401" locType="exact" alnQuality="0.995894" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3743400" rightContigNeighborPos="3743402" numberOfMismatches="4" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
215
|
+
</Component>
|
|
216
|
+
<Component componentType="contig" ctgId="224515581" accession="NT_167248.1" name="NT_167248.1" chromosome="6" orientation="fwd" gi="224515581" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
217
|
+
<MapLoc asnFrom="3624701" asnTo="3624701" locType="exact" alnQuality="1" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3624700" rightContigNeighborPos="3624702" numberOfMismatches="1" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
218
|
+
</Component>
|
|
219
|
+
<Component componentType="contig" ctgId="224515582" accession="NT_167249.1" name="NT_167249.1" chromosome="6" orientation="fwd" gi="224515582" groupTerm="GRCh37" contigLabel="GRCh37">
|
|
220
|
+
<MapLoc asnFrom="3711286" asnTo="3711286" locType="exact" alnQuality="0.995894" orient="forward" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="3711285" rightContigNeighborPos="3711287" numberOfMismatches="4" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
221
|
+
</Component>
|
|
222
|
+
<SnpStat mapWeight="unique-in-contig" chromCount="1" placedContigCount="1" unplacedContigCount="0" seqlocCount="8" hapCount="0"/>
|
|
223
|
+
</Assembly>
|
|
224
|
+
<Assembly dbSnpBuild="132" genomeBuild="37_1" groupLabel="HuRef" current="true">
|
|
225
|
+
<Component componentType="contig" ctgId="157696541" accession="NW_001838980.1" name="NW_001838980.1" chromosome="6" start="26727691" end="39531031" orientation="fwd" gi="157696541" groupTerm="HuRef" contigLabel="HuRef">
|
|
226
|
+
<MapLoc asnFrom="5390074" asnTo="5390074" locType="exact" alnQuality="0.995894" orient="forward" physMapInt="32117765" leftFlankNeighborPos="399" rightFlankNeighborPos="401" leftContigNeighborPos="5390073" rightContigNeighborPos="5390075" numberOfMismatches="4" numberOfDeletions="0" numberOfInsertions="0"></MapLoc>
|
|
227
|
+
</Component>
|
|
228
|
+
<SnpStat mapWeight="unique-in-contig" chromCount="1" placedContigCount="1" unplacedContigCount="0" seqlocCount="1" hapCount="0"/>
|
|
229
|
+
</Assembly>
|
|
230
|
+
<PrimarySequence dbSnpBuild="132" gi="9624968" source="remap" accession="NM_019602">
|
|
231
|
+
<MapLoc asnFrom="1049" asnTo="1049" locType="exact" alnQuality="1" orient="reverse" leftContigNeighborPos="1048" rightContigNeighborPos="1050"></MapLoc>
|
|
232
|
+
</PrimarySequence>
|
|
233
|
+
<RsStruct protAcc="NP_062548" protGi="9624969" protLoc="350" protResidue="Q" rsResidue="Q" structGi="209870436" structLoc="111" structResidue="E"/>
|
|
234
|
+
<RsStruct protAcc="NP_062548" protGi="9624969" protLoc="350" protResidue="Q" rsResidue="H" structGi="209870436" structLoc="111" structResidue="E"/>
|
|
235
|
+
<RsStruct protAcc="NP_062548" protGi="9624969" protLoc="350" protResidue="Q" rsResidue="H" structGi="209870436" structLoc="111" structResidue="E"/>
|
|
236
|
+
<RsLinkout resourceId="1" linkValue="9268480"/>
|
|
237
|
+
<MergeHistory rsId="57538739" buildId="130"/>
|
|
238
|
+
<MergeHistory rsId="17423795" buildId="123"/>
|
|
239
|
+
<MergeHistory rsId="17208804" buildId="126"/>
|
|
240
|
+
<hgvs>NM_019602.1:c.1050G>A</hgvs>
|
|
241
|
+
<hgvs>NT_007592.15:g.32303844C>T</hgvs>
|
|
242
|
+
</Rs>
|
|
243
|
+
|
|
244
|
+
|
|
245
|
+
|
|
246
|
+
<Summary/><BaseURL></BaseURL></ExchangeSet>
|
metadata
ADDED
|
@@ -0,0 +1,105 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: entrez
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
prerelease: false
|
|
5
|
+
segments:
|
|
6
|
+
- 0
|
|
7
|
+
- 0
|
|
8
|
+
- 1
|
|
9
|
+
version: 0.0.1
|
|
10
|
+
platform: ruby
|
|
11
|
+
authors:
|
|
12
|
+
- Jared Ning
|
|
13
|
+
autorequire:
|
|
14
|
+
bindir: bin
|
|
15
|
+
cert_chain: []
|
|
16
|
+
|
|
17
|
+
date: 2011-02-03 00:00:00 -06:00
|
|
18
|
+
default_executable:
|
|
19
|
+
dependencies:
|
|
20
|
+
- !ruby/object:Gem::Dependency
|
|
21
|
+
name: httparty
|
|
22
|
+
prerelease: false
|
|
23
|
+
requirement: &id001 !ruby/object:Gem::Requirement
|
|
24
|
+
none: false
|
|
25
|
+
requirements:
|
|
26
|
+
- - ">="
|
|
27
|
+
- !ruby/object:Gem::Version
|
|
28
|
+
segments:
|
|
29
|
+
- 0
|
|
30
|
+
version: "0"
|
|
31
|
+
type: :runtime
|
|
32
|
+
version_requirements: *id001
|
|
33
|
+
- !ruby/object:Gem::Dependency
|
|
34
|
+
name: rspec
|
|
35
|
+
prerelease: false
|
|
36
|
+
requirement: &id002 !ruby/object:Gem::Requirement
|
|
37
|
+
none: false
|
|
38
|
+
requirements:
|
|
39
|
+
- - "="
|
|
40
|
+
- !ruby/object:Gem::Version
|
|
41
|
+
segments:
|
|
42
|
+
- 2
|
|
43
|
+
- 4
|
|
44
|
+
- 0
|
|
45
|
+
version: 2.4.0
|
|
46
|
+
type: :development
|
|
47
|
+
version_requirements: *id002
|
|
48
|
+
description: Simple API for HTTP requests to Entrez E-utilities
|
|
49
|
+
email:
|
|
50
|
+
- jared@redningja.com
|
|
51
|
+
executables: []
|
|
52
|
+
|
|
53
|
+
extensions: []
|
|
54
|
+
|
|
55
|
+
extra_rdoc_files: []
|
|
56
|
+
|
|
57
|
+
files:
|
|
58
|
+
- .gitignore
|
|
59
|
+
- .rvmrc
|
|
60
|
+
- Gemfile
|
|
61
|
+
- Rakefile
|
|
62
|
+
- entrez.gemspec
|
|
63
|
+
- lib/entrez.rb
|
|
64
|
+
- lib/entrez/version.rb
|
|
65
|
+
- spec/entrez_spec.rb
|
|
66
|
+
- spec/spec_helper.rb
|
|
67
|
+
- spec/support/fixtures/efetch.xml
|
|
68
|
+
- spec/support/macros.rb
|
|
69
|
+
has_rdoc: true
|
|
70
|
+
homepage: https://github.com/ordinaryzelig/entrez
|
|
71
|
+
licenses: []
|
|
72
|
+
|
|
73
|
+
post_install_message:
|
|
74
|
+
rdoc_options: []
|
|
75
|
+
|
|
76
|
+
require_paths:
|
|
77
|
+
- lib
|
|
78
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
79
|
+
none: false
|
|
80
|
+
requirements:
|
|
81
|
+
- - ">="
|
|
82
|
+
- !ruby/object:Gem::Version
|
|
83
|
+
segments:
|
|
84
|
+
- 0
|
|
85
|
+
version: "0"
|
|
86
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
87
|
+
none: false
|
|
88
|
+
requirements:
|
|
89
|
+
- - ">="
|
|
90
|
+
- !ruby/object:Gem::Version
|
|
91
|
+
segments:
|
|
92
|
+
- 0
|
|
93
|
+
version: "0"
|
|
94
|
+
requirements: []
|
|
95
|
+
|
|
96
|
+
rubyforge_project: entrez
|
|
97
|
+
rubygems_version: 1.3.7
|
|
98
|
+
signing_key:
|
|
99
|
+
specification_version: 3
|
|
100
|
+
summary: HTTP requests to Entrez E-utilities
|
|
101
|
+
test_files:
|
|
102
|
+
- spec/entrez_spec.rb
|
|
103
|
+
- spec/spec_helper.rb
|
|
104
|
+
- spec/support/fixtures/efetch.xml
|
|
105
|
+
- spec/support/macros.rb
|