dwc-archive 0.7.10 → 0.7.11
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- data/VERSION +1 -1
- data/lib/dwc-archive/classification_normalizer.rb +10 -4
- data/spec/lib/dwc-archive_spec.rb +3 -1
- metadata +23 -23
data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.7.
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1
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+
0.7.11
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@@ -4,12 +4,13 @@ require 'parsley-store'
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4
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class DarwinCore
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5
5
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6
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class TaxonNormalized
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7
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-
attr_accessor :id, :parent_id, :classification_path_id, :classification_path, :current_name, :current_name_canonical, :synonyms, :vernacular_names, :rank, :status
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7
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+
attr_accessor :id, :source, :parent_id, :classification_path_id, :classification_path, :current_name, :current_name_canonical, :synonyms, :vernacular_names, :rank, :status
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8
8
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9
9
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def initialize
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10
10
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@id = @parent_id = @rank = @status = nil
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11
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@current_name = ''
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12
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@current_name_canonical = ''
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13
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+
@source = ''
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@classification_path = []
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@classification_path_id = []
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@synonyms = []
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@@ -18,7 +19,7 @@ class DarwinCore
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19
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end
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21
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-
class SynonymNormalized < Struct.new(:id, :name, :canonical_name, :status);end
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+
class SynonymNormalized < Struct.new(:id, :name, :canonical_name, :status, :source);end
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class VernacularNormalized < Struct.new(:name, :language, :locality, :country_code);end
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class ClassificationNormalizer
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@@ -100,7 +101,9 @@ class DarwinCore
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row[@core_fields[:id]],
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row[@core_fields[:scientificname]],
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row[@core_fields[:canonicalname]],
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103
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-
@core_fields[:taxonomicstatus] ? row[@core_fields[:taxonomicstatus]] : nil
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104
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+
@core_fields[:taxonomicstatus] ? row[@core_fields[:taxonomicstatus]] : nil,
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105
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+
@core_fields[:source] ? row[@core_fields[:source]] : nil
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106
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+
)
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taxon.synonyms << synonym
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105
108
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add_name_string(synonym.name)
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add_name_string(synonym.canonical_name)
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@@ -151,6 +154,7 @@ class DarwinCore
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taxon.parent_id = has_parent_id? ? r[parent_id] : nil
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taxon.rank = r[@core_fields[:taxonrank]] if @core_fields[:taxonrank]
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taxon.status = r[@core_fields[:taxonomicstatus]] if @core_fields[:taxonomicstatus]
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157
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+
taxon.source = r[@core_fields[:source]] if @core_fields[:source]
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add_name_string(taxon.current_name)
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add_name_string(taxon.current_name_canonical) if taxon.current_name_canonical && !taxon.current_name_canonical.empty?
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end
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@@ -244,7 +248,9 @@ class DarwinCore
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nil,
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r[fields[:scientificname]],
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r[fields[:canonicalname]],
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-
fields[:taxonomicstatus] ? r[fields[:taxonomicstatus]] : nil
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251
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+
fields[:taxonomicstatus] ? r[fields[:taxonomicstatus]] : nil,
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+
fields[:source] ? r[fields[:source]] : nil
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+
)
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if @normalized_data[r[fields[:id]]]
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@normalized_data[r[fields[:id]]].synonyms << synonym
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add_name_string(synonym.name)
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@@ -66,7 +66,7 @@ describe DarwinCore do
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cn.normalized_data.size.should > 0
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end
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-
it "should return name_strings back" do
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+
it "should return array or hash of name_strings back" do
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file = File.join(@file_dir, 'data.tar.gz')
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dwc = DarwinCore.new(file)
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cn = DarwinCore::ClassificationNormalizer.new(dwc)
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@@ -101,6 +101,7 @@ describe DarwinCore do
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path_encodings.size.should == 1
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path_encodings[0].to_s.should == "UTF-8"
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norm['leptogastrinae:tid:2857'].class.should == DarwinCore::TaxonNormalized
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+
norm['leptogastrinae:tid:2857'].source.should == 'http://leptogastrinae.lifedesks.org/pages/2857'
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end
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it "should assemble synonyms from core" do
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@@ -110,6 +111,7 @@ describe DarwinCore do
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syn = norm.values.select {|n| n.synonyms.size > 0}[0].synonyms[0]
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syn.id.should == 'leptogastrinae:tid:127'
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syn.name.should == "Leptogastridae"
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+
syn.source.should == 'http://leptogastrinae.lifedesks.org/pages/127'
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end
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it "should be able to assemble vernacular names from an extension" do
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: dwc-archive
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version: !ruby/object:Gem::Version
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-
version: 0.7.
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4
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+
version: 0.7.11
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prerelease:
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platform: ruby
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authors:
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@@ -9,11 +9,11 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2011-12-
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+
date: 2011-12-09 00:00:00.000000000Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: parsley-store
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requirement: &
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requirement: &70111883158320 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -21,10 +21,10 @@ dependencies:
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version: 0.3.0
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type: :runtime
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prerelease: false
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version_requirements: *
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version_requirements: *70111883158320
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- !ruby/object:Gem::Dependency
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name: rspec
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requirement: &
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requirement: &70111883157760 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -32,10 +32,10 @@ dependencies:
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version: 2.7.0
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70111883157760
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- !ruby/object:Gem::Dependency
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name: nokogiri
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requirement: &
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requirement: &70111883157140 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -43,10 +43,10 @@ dependencies:
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version: 1.5.0
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70111883157140
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- !ruby/object:Gem::Dependency
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name: cucumber
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requirement: &
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requirement: &70111883156600 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -54,10 +54,10 @@ dependencies:
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version: 1.1.3
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70111883156600
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: &
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requirement: &70111883156040 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -65,10 +65,10 @@ dependencies:
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version: '1.0'
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70111883156040
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- !ruby/object:Gem::Dependency
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name: jeweler
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requirement: &
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requirement: &70111883155440 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -76,10 +76,10 @@ dependencies:
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version: 1.6.4
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70111883155440
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- !ruby/object:Gem::Dependency
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name: ruby-debug19
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requirement: &
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requirement: &70111883154680 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -87,10 +87,10 @@ dependencies:
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version: 0.11.6
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type: :development
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prerelease: false
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-
version_requirements: *
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version_requirements: *70111883154680
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- !ruby/object:Gem::Dependency
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name: parsley-store
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requirement: &
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requirement: &70111883153980 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -98,10 +98,10 @@ dependencies:
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version: 0.3.0
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *70111883153980
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- !ruby/object:Gem::Dependency
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name: rspec
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-
requirement: &
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+
requirement: &70111883153440 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -109,10 +109,10 @@ dependencies:
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version: 1.2.9
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type: :development
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *70111883153440
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- !ruby/object:Gem::Dependency
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name: cucumber
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-
requirement: &
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+
requirement: &70111883152900 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -120,7 +120,7 @@ dependencies:
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version: '0'
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type: :development
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *70111883152900
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description: Darwin Core Archive is the current standard exchange format for GLobal
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Names Architecture modules. This gem makes it easy to incorporate files in Darwin
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Core Archive format into a ruby project.
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@@ -201,7 +201,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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203
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rubyforge_project:
|
204
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-
rubygems_version: 1.8.
|
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+
rubygems_version: 1.8.10
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205
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signing_key:
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206
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specification_version: 3
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summary: Handler of Darwin Core Archive files
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