dirseq 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/README.md +4 -0
- data/VERSION +1 -1
- data/bin/dirseq +1 -1
- metadata +3 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: f1af55dda3a8cfe508bf3cf49fb877dddfbda7b6
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4
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+
data.tar.gz: e2334d82dfcaf555255234cb61e409a0c3bf262d
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 43d4538cc5bd983468642056f80d3386663c93b7b7a64ecf2c2917fd84592c75787851c83c8657606f228dc1008e15e67733a48ac713e45bb9b2a95556ca37df
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7
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+
data.tar.gz: 155d7a12624068d8cc8cf20ce2b672c027601a6cc39741ebf78d670cef22779899d26f1073ef2450c2f200bac31f3349262c4d8994094e5138430be692b63596
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data/README.md
CHANGED
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@@ -32,7 +32,11 @@ $ dirseq -h
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32
32
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33
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Optional parameters:
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34
34
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35
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+
--forward-read-only consider only forward reads (i.e. read1) and ignore reverse reads. [default false]
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35
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--ignore-directions ignore directionality, give overall coverage [default: false i.e. differentiate between directions]
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37
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+
--measure-type TYPE what to count for each gene [options: count, coverage][default: coverage]
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38
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+
--accepted-feature-types TYPE
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39
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Print only features of these type(s) [default CDS]
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36
40
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Verbosity:
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38
42
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.2.
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1
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+
0.2.1
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data/bin/dirseq
CHANGED
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@@ -50,7 +50,7 @@ o = OptionParser.new do |opts|
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50
50
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end
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51
51
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opts.on("--accepted-feature-types TYPE", Array,
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52
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"Print only features of these type(s) [default #{options[:accepted_feature_types].join(',')}]") do |arg|
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53
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-
options[:accepted_feature_types] =
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53
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+
options[:accepted_feature_types] = Set.new(arg)
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54
54
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end
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55
55
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56
56
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# logger options
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: dirseq
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version: !ruby/object:Gem::Version
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4
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-
version: 0.2.
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4
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+
version: 0.2.1
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Ben J. Woodcroft
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2018-
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11
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+
date: 2018-09-20 00:00:00.000000000 Z
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12
12
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dependencies:
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13
13
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- !ruby/object:Gem::Dependency
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14
14
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name: bio-commandeer
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@@ -160,7 +160,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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160
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version: '0'
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161
161
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requirements: []
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162
162
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rubyforge_project:
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163
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-
rubygems_version: 2.6.
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163
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+
rubygems_version: 2.6.14.1
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164
164
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signing_key:
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165
165
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specification_version: 4
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166
166
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summary: FPKG calculator for metatranscriptomics
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