dimus-biodiversity 0.5.4 → 0.5.10
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- data/.document +5 -0
- data/.gitignore +13 -0
- data/LICENSE +20 -21
- data/Rakefile +25 -23
- data/VERSION +1 -0
- data/bin/nnparse +12 -38
- data/lib/biodiversity/parser/scientific_name_clean.rb +52 -52
- data/spec/biodiversity_spec.rb +0 -0
- data/spec/parser/spec_helper.rb +69 -0
- data/spec/parser/test_data.txt +235 -0
- data/spec/spec_helper.rb +0 -0
- metadata +53 -32
data/.document
ADDED
data/.gitignore
ADDED
data/LICENSE
CHANGED
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@@ -1,21 +1,20 @@
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Copyright (c)
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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Copyright (c) 2009 Dmitry Mozzherin
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/Rakefile
CHANGED
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@@ -1,29 +1,39 @@
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1
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dir = File.dirname(__FILE__)
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require 'rubygems'
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require 'rake'
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-
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+
#$LOAD_PATH.unshift(File.join(dir, 'vendor', 'rspec', 'lib'))
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require 'spec/rake/spectask'
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#Gem::manage_gems
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-
require 'rake/gempackagetask'
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+
#require 'rake/gempackagetask'
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10
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task :default => :spec
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-
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# gemspec.name = "biodiversity"
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# gemspec.summary = "scientific species name parser\n\nExecutable is nnparse"
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-
# gemspec.email = "dmozzherin {et} eol {dt} org"
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-
# gemspec.homepage = "http://github.com/dimus/biodiversity"
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# gemspec.description = "Biodiversity library provides a parser tool for scientific species names"
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# gemspec.authors = ["Dmitry Mozzherin", "Anna Shipunova"]
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# end
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#rescue LoadError
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# puts "Jeweler not available. Install it with: sudo gem install technicalpickles-jeweler -s http://gems.github.com"
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#end
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Spec::Rake::SpecTask.new do |t|
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t.pattern = 'spec/**/*spec.rb'
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end
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begin
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require 'jeweler'
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Jeweler::Tasks.new do |gem|
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gem.name = "biodiversity"
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gem.summary = 'Parser of scientific names'
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gem.description = 'Tools for biodiversity informatics'
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gem.email = "dmozzherin@gmail.com"
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gem.homepage = "http://github.com/dimus/biodiversity"
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gem.authors = ["Dmitry Mozzherin"]
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gem.has_rdoc = false
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gem.bindir = 'bin'
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gem.executables = ['nnparse']
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gem.add_dependency('treetop')
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gem.add_dependency('json') if RUBY_VERSION.split(".")[0..1].join('').to_i < 19
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gem.add_development_dependency "rspec"
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# gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
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end
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rescue LoadError
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puts "Jeweler (or a dependency) not available. Install it with: sudo gem install jeweler"
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+
end
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task :tt do
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system("tt #{dir}/lib/biodiversity/parser/scientific_name_clean.treetop")
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@@ -31,11 +41,3 @@ task :tt do
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system("tt #{dir}/lib/biodiversity/parser/scientific_name_canonical.treetop")
|
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32
42
|
end
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34
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-
task :files do
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35
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-
puts FileList["LICENSE", "README.rdoc", "Rakefile", "{spec,lib,bin,doc,examples}/**/*"].to_a.join(' ')
|
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-
end
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Spec::Rake::SpecTask.new do |t|
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t.pattern = 'spec/**/*spec.rb'
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-
end
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|
data/VERSION
ADDED
|
@@ -0,0 +1 @@
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1
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+
0.5.10
|
data/bin/nnparse
CHANGED
|
@@ -11,44 +11,18 @@ if ARGV.empty?
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11
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exit
|
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12
12
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end
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-
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parser = ScientificNameParser.new
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16
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-
dirty_parser = ScientificNameDirtyParser.new
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17
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-
|
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14
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+
input = ARGV[0]
|
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18
15
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output = ARGV[1] || 'parsed.json'
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o = File.open(output,'w')
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p count2 if count2 % 5000 == 0
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32
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-
n.strip!
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33
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-
name_dict = {:input => n}
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34
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-
parsed = parser.parse(n) || dirty_parser.parse(n)
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35
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-
unless parsed
|
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36
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-
name_dict[:details] = {:parsed => false}
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37
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-
last_result = JSON.generate name_dict
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38
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-
puts n
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39
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-
count += 1
|
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40
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-
else
|
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41
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-
begin
|
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42
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-
name_dict[:output] = parsed.value
|
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43
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-
name_dict[:canononical] = parsed.canonical
|
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44
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-
name_dict[:details] = parsed.details
|
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45
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-
name_dict[:parsed => true]
|
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46
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-
last_result = JSON.generate name_dict
|
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47
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-
rescue
|
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48
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-
puts 'PROBLEM: ' + n
|
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49
|
-
end
|
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50
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-
end
|
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17
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+
p = ScientificNameParser.new
|
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18
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+
o = open(output, 'w')
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19
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+
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20
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count = 0
|
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21
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+
IO.foreach(input) do |line|
|
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22
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+
count += 1
|
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23
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+
puts("%s lines parsed" % count) if count % 10000 == 0
|
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24
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+
name = line.gsub(/^[\d]*\s*/, '').strip
|
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25
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+
parsed_data = p.parse(name).to_json rescue {'parsed' => false, 'vernacular' => name, 'error' => 'Parser error'}.to_json
|
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26
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+
o.write parsed_data + "\n"
|
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51
27
|
end
|
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52
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-
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53
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-
o.write("]")
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54
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-
puts "Found #{count2} records, #{count} of them could not be parsed."
|
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28
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+
|
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@@ -1591,8 +1591,8 @@ module ScientificNameClean
|
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1591
1591
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r1.extend(Rank0)
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1592
1592
|
else
|
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1593
1593
|
if input.index("α", index) == index
|
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1594
|
-
r18 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1595
|
-
@index +=
|
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1594
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+
r18 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
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1595
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+
@index += 2
|
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1596
1596
|
else
|
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1597
1597
|
terminal_parse_failure("α")
|
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1598
1598
|
r18 = nil
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@@ -1602,8 +1602,8 @@ module ScientificNameClean
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1602
1602
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r1.extend(Rank0)
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1603
1603
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else
|
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1604
1604
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if input.index("ββ", index) == index
|
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1605
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-
r19 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1606
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-
@index +=
|
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1605
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+
r19 = instantiate_node(SyntaxNode,input, index...(index + 4))
|
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1606
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+
@index += 4
|
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1607
1607
|
else
|
|
1608
1608
|
terminal_parse_failure("ββ")
|
|
1609
1609
|
r19 = nil
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|
@@ -1613,8 +1613,8 @@ module ScientificNameClean
|
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|
1613
1613
|
r1.extend(Rank0)
|
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1614
1614
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else
|
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1615
1615
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if input.index("β", index) == index
|
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1616
|
-
r20 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1617
|
-
@index +=
|
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1616
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+
r20 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1617
|
+
@index += 2
|
|
1618
1618
|
else
|
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1619
1619
|
terminal_parse_failure("β")
|
|
1620
1620
|
r20 = nil
|
|
@@ -1624,8 +1624,8 @@ module ScientificNameClean
|
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|
1624
1624
|
r1.extend(Rank0)
|
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1625
1625
|
else
|
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1626
1626
|
if input.index("γ", index) == index
|
|
1627
|
-
r21 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1628
|
-
@index +=
|
|
1627
|
+
r21 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1628
|
+
@index += 2
|
|
1629
1629
|
else
|
|
1630
1630
|
terminal_parse_failure("γ")
|
|
1631
1631
|
r21 = nil
|
|
@@ -1635,8 +1635,8 @@ module ScientificNameClean
|
|
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1635
1635
|
r1.extend(Rank0)
|
|
1636
1636
|
else
|
|
1637
1637
|
if input.index("δ", index) == index
|
|
1638
|
-
r22 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1639
|
-
@index +=
|
|
1638
|
+
r22 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1639
|
+
@index += 2
|
|
1640
1640
|
else
|
|
1641
1641
|
terminal_parse_failure("δ")
|
|
1642
1642
|
r22 = nil
|
|
@@ -1646,8 +1646,8 @@ module ScientificNameClean
|
|
|
1646
1646
|
r1.extend(Rank0)
|
|
1647
1647
|
else
|
|
1648
1648
|
if input.index("ε", index) == index
|
|
1649
|
-
r23 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1650
|
-
@index +=
|
|
1649
|
+
r23 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1650
|
+
@index += 2
|
|
1651
1651
|
else
|
|
1652
1652
|
terminal_parse_failure("ε")
|
|
1653
1653
|
r23 = nil
|
|
@@ -1657,8 +1657,8 @@ module ScientificNameClean
|
|
|
1657
1657
|
r1.extend(Rank0)
|
|
1658
1658
|
else
|
|
1659
1659
|
if input.index("φ", index) == index
|
|
1660
|
-
r24 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1661
|
-
@index +=
|
|
1660
|
+
r24 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1661
|
+
@index += 2
|
|
1662
1662
|
else
|
|
1663
1663
|
terminal_parse_failure("φ")
|
|
1664
1664
|
r24 = nil
|
|
@@ -1668,8 +1668,8 @@ module ScientificNameClean
|
|
|
1668
1668
|
r1.extend(Rank0)
|
|
1669
1669
|
else
|
|
1670
1670
|
if input.index("θ", index) == index
|
|
1671
|
-
r25 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1672
|
-
@index +=
|
|
1671
|
+
r25 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1672
|
+
@index += 2
|
|
1673
1673
|
else
|
|
1674
1674
|
terminal_parse_failure("θ")
|
|
1675
1675
|
r25 = nil
|
|
@@ -1679,8 +1679,8 @@ module ScientificNameClean
|
|
|
1679
1679
|
r1.extend(Rank0)
|
|
1680
1680
|
else
|
|
1681
1681
|
if input.index("μ", index) == index
|
|
1682
|
-
r26 = instantiate_node(SyntaxNode,input, index...(index +
|
|
1683
|
-
@index +=
|
|
1682
|
+
r26 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
1683
|
+
@index += 2
|
|
1684
1684
|
else
|
|
1685
1685
|
terminal_parse_failure("μ")
|
|
1686
1686
|
r26 = nil
|
|
@@ -3999,8 +3999,8 @@ module ScientificNameClean
|
|
|
3999
3999
|
i6, s6 = index, []
|
|
4000
4000
|
i7 = index
|
|
4001
4001
|
if input.index("Å", index) == index
|
|
4002
|
-
r8 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4003
|
-
@index +=
|
|
4002
|
+
r8 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4003
|
+
@index += 2
|
|
4004
4004
|
else
|
|
4005
4005
|
terminal_parse_failure("Å")
|
|
4006
4006
|
r8 = nil
|
|
@@ -4009,8 +4009,8 @@ module ScientificNameClean
|
|
|
4009
4009
|
r7 = r8
|
|
4010
4010
|
else
|
|
4011
4011
|
if input.index("Ö", index) == index
|
|
4012
|
-
r9 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4013
|
-
@index +=
|
|
4012
|
+
r9 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4013
|
+
@index += 2
|
|
4014
4014
|
else
|
|
4015
4015
|
terminal_parse_failure("Ö")
|
|
4016
4016
|
r9 = nil
|
|
@@ -4019,8 +4019,8 @@ module ScientificNameClean
|
|
|
4019
4019
|
r7 = r9
|
|
4020
4020
|
else
|
|
4021
4021
|
if input.index("Á", index) == index
|
|
4022
|
-
r10 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4023
|
-
@index +=
|
|
4022
|
+
r10 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4023
|
+
@index += 2
|
|
4024
4024
|
else
|
|
4025
4025
|
terminal_parse_failure("Á")
|
|
4026
4026
|
r10 = nil
|
|
@@ -4029,8 +4029,8 @@ module ScientificNameClean
|
|
|
4029
4029
|
r7 = r10
|
|
4030
4030
|
else
|
|
4031
4031
|
if input.index("Ø", index) == index
|
|
4032
|
-
r11 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4033
|
-
@index +=
|
|
4032
|
+
r11 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4033
|
+
@index += 2
|
|
4034
4034
|
else
|
|
4035
4035
|
terminal_parse_failure("Ø")
|
|
4036
4036
|
r11 = nil
|
|
@@ -4039,8 +4039,8 @@ module ScientificNameClean
|
|
|
4039
4039
|
r7 = r11
|
|
4040
4040
|
else
|
|
4041
4041
|
if input.index("Ô", index) == index
|
|
4042
|
-
r12 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4043
|
-
@index +=
|
|
4042
|
+
r12 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4043
|
+
@index += 2
|
|
4044
4044
|
else
|
|
4045
4045
|
terminal_parse_failure("Ô")
|
|
4046
4046
|
r12 = nil
|
|
@@ -4049,8 +4049,8 @@ module ScientificNameClean
|
|
|
4049
4049
|
r7 = r12
|
|
4050
4050
|
else
|
|
4051
4051
|
if input.index("Š", index) == index
|
|
4052
|
-
r13 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4053
|
-
@index +=
|
|
4052
|
+
r13 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4053
|
+
@index += 2
|
|
4054
4054
|
else
|
|
4055
4055
|
terminal_parse_failure("Š")
|
|
4056
4056
|
r13 = nil
|
|
@@ -4059,8 +4059,8 @@ module ScientificNameClean
|
|
|
4059
4059
|
r7 = r13
|
|
4060
4060
|
else
|
|
4061
4061
|
if input.index("Ś", index) == index
|
|
4062
|
-
r14 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4063
|
-
@index +=
|
|
4062
|
+
r14 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4063
|
+
@index += 2
|
|
4064
4064
|
else
|
|
4065
4065
|
terminal_parse_failure("Ś")
|
|
4066
4066
|
r14 = nil
|
|
@@ -4069,8 +4069,8 @@ module ScientificNameClean
|
|
|
4069
4069
|
r7 = r14
|
|
4070
4070
|
else
|
|
4071
4071
|
if input.index("Č", index) == index
|
|
4072
|
-
r15 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4073
|
-
@index +=
|
|
4072
|
+
r15 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4073
|
+
@index += 2
|
|
4074
4074
|
else
|
|
4075
4075
|
terminal_parse_failure("Č")
|
|
4076
4076
|
r15 = nil
|
|
@@ -4079,8 +4079,8 @@ module ScientificNameClean
|
|
|
4079
4079
|
r7 = r15
|
|
4080
4080
|
else
|
|
4081
4081
|
if input.index("Ķ", index) == index
|
|
4082
|
-
r16 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4083
|
-
@index +=
|
|
4082
|
+
r16 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4083
|
+
@index += 2
|
|
4084
4084
|
else
|
|
4085
4085
|
terminal_parse_failure("Ķ")
|
|
4086
4086
|
r16 = nil
|
|
@@ -4089,8 +4089,8 @@ module ScientificNameClean
|
|
|
4089
4089
|
r7 = r16
|
|
4090
4090
|
else
|
|
4091
4091
|
if input.index("Ł", index) == index
|
|
4092
|
-
r17 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4093
|
-
@index +=
|
|
4092
|
+
r17 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4093
|
+
@index += 2
|
|
4094
4094
|
else
|
|
4095
4095
|
terminal_parse_failure("Ł")
|
|
4096
4096
|
r17 = nil
|
|
@@ -4099,8 +4099,8 @@ module ScientificNameClean
|
|
|
4099
4099
|
r7 = r17
|
|
4100
4100
|
else
|
|
4101
4101
|
if input.index("É", index) == index
|
|
4102
|
-
r18 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4103
|
-
@index +=
|
|
4102
|
+
r18 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4103
|
+
@index += 2
|
|
4104
4104
|
else
|
|
4105
4105
|
terminal_parse_failure("É")
|
|
4106
4106
|
r18 = nil
|
|
@@ -4109,8 +4109,8 @@ module ScientificNameClean
|
|
|
4109
4109
|
r7 = r18
|
|
4110
4110
|
else
|
|
4111
4111
|
if input.index("Ž", index) == index
|
|
4112
|
-
r19 = instantiate_node(SyntaxNode,input, index...(index +
|
|
4113
|
-
@index +=
|
|
4112
|
+
r19 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
4113
|
+
@index += 2
|
|
4114
4114
|
else
|
|
4115
4115
|
terminal_parse_failure("Ž")
|
|
4116
4116
|
r19 = nil
|
|
@@ -5454,9 +5454,9 @@ module ScientificNameClean
|
|
|
5454
5454
|
|
|
5455
5455
|
i0 = index
|
|
5456
5456
|
if input.index("Æ", index) == index
|
|
5457
|
-
r1 = instantiate_node(SyntaxNode,input, index...(index +
|
|
5457
|
+
r1 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
5458
5458
|
r1.extend(CapDigraph0)
|
|
5459
|
-
@index +=
|
|
5459
|
+
@index += 2
|
|
5460
5460
|
else
|
|
5461
5461
|
terminal_parse_failure("Æ")
|
|
5462
5462
|
r1 = nil
|
|
@@ -5465,9 +5465,9 @@ module ScientificNameClean
|
|
|
5465
5465
|
r0 = r1
|
|
5466
5466
|
else
|
|
5467
5467
|
if input.index("Œ", index) == index
|
|
5468
|
-
r2 = instantiate_node(SyntaxNode,input, index...(index +
|
|
5468
|
+
r2 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
5469
5469
|
r2.extend(CapDigraph1)
|
|
5470
|
-
@index +=
|
|
5470
|
+
@index += 2
|
|
5471
5471
|
else
|
|
5472
5472
|
terminal_parse_failure("Œ")
|
|
5473
5473
|
r2 = nil
|
|
@@ -5507,9 +5507,9 @@ module ScientificNameClean
|
|
|
5507
5507
|
|
|
5508
5508
|
i0 = index
|
|
5509
5509
|
if input.index("æ", index) == index
|
|
5510
|
-
r1 = instantiate_node(SyntaxNode,input, index...(index +
|
|
5510
|
+
r1 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
5511
5511
|
r1.extend(Digraph0)
|
|
5512
|
-
@index +=
|
|
5512
|
+
@index += 2
|
|
5513
5513
|
else
|
|
5514
5514
|
terminal_parse_failure("æ")
|
|
5515
5515
|
r1 = nil
|
|
@@ -5518,9 +5518,9 @@ module ScientificNameClean
|
|
|
5518
5518
|
r0 = r1
|
|
5519
5519
|
else
|
|
5520
5520
|
if input.index("œ", index) == index
|
|
5521
|
-
r2 = instantiate_node(SyntaxNode,input, index...(index +
|
|
5521
|
+
r2 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
5522
5522
|
r2.extend(Digraph1)
|
|
5523
|
-
@index +=
|
|
5523
|
+
@index += 2
|
|
5524
5524
|
else
|
|
5525
5525
|
terminal_parse_failure("œ")
|
|
5526
5526
|
r2 = nil
|
|
@@ -5908,9 +5908,9 @@ module ScientificNameClean
|
|
|
5908
5908
|
end
|
|
5909
5909
|
|
|
5910
5910
|
if input.index("×", index) == index
|
|
5911
|
-
r0 = instantiate_node(SyntaxNode,input, index...(index +
|
|
5911
|
+
r0 = instantiate_node(SyntaxNode,input, index...(index + 2))
|
|
5912
5912
|
r0.extend(MultiplicationSign0)
|
|
5913
|
-
@index +=
|
|
5913
|
+
@index += 2
|
|
5914
5914
|
else
|
|
5915
5915
|
terminal_parse_failure("×")
|
|
5916
5916
|
r0 = nil
|
|
File without changes
|
|
@@ -0,0 +1,69 @@
|
|
|
1
|
+
dir = File.dirname("__FILE__")
|
|
2
|
+
require 'rubygems'
|
|
3
|
+
require 'spec'
|
|
4
|
+
require 'yaml'
|
|
5
|
+
require 'treetop'
|
|
6
|
+
require 'json'
|
|
7
|
+
require File.expand_path(dir + '../../lib/biodiversity/parser')
|
|
8
|
+
|
|
9
|
+
Treetop.load(File.expand_path(dir + '../../lib/biodiversity/parser/scientific_name_clean'))
|
|
10
|
+
Treetop.load(File.expand_path(dir + '../../lib/biodiversity/parser/scientific_name_dirty'))
|
|
11
|
+
Treetop.load(File.expand_path(dir + '../../lib/biodiversity/parser/scientific_name_canonical'))
|
|
12
|
+
|
|
13
|
+
def set_parser(parser)
|
|
14
|
+
@parser = parser
|
|
15
|
+
end
|
|
16
|
+
|
|
17
|
+
def parse(input)
|
|
18
|
+
@parser.parse(input)
|
|
19
|
+
end
|
|
20
|
+
|
|
21
|
+
def value(input)
|
|
22
|
+
parse(input).value
|
|
23
|
+
end
|
|
24
|
+
|
|
25
|
+
def canonical(input)
|
|
26
|
+
parse(input).canonical
|
|
27
|
+
end
|
|
28
|
+
|
|
29
|
+
def details(input)
|
|
30
|
+
parse(input).details
|
|
31
|
+
end
|
|
32
|
+
|
|
33
|
+
def pos(input)
|
|
34
|
+
parse(input).pos
|
|
35
|
+
end
|
|
36
|
+
|
|
37
|
+
def json(input)
|
|
38
|
+
parse(input).to_json
|
|
39
|
+
end
|
|
40
|
+
|
|
41
|
+
def debug(input)
|
|
42
|
+
res = parse(input)
|
|
43
|
+
puts "<pre>"
|
|
44
|
+
if res
|
|
45
|
+
puts 'success!'
|
|
46
|
+
puts res.inspect
|
|
47
|
+
else
|
|
48
|
+
puts input
|
|
49
|
+
val = @parser.failure_reason.to_s.match(/column [0-9]*/).to_s.gsub(/column /,'').to_i
|
|
50
|
+
print ("-" * (val - 1))
|
|
51
|
+
print "^ Computer says 'no'!\n"
|
|
52
|
+
puts @parser.failure_reason
|
|
53
|
+
puts @parser.to_yaml
|
|
54
|
+
end
|
|
55
|
+
puts "</pre>"
|
|
56
|
+
end
|
|
57
|
+
|
|
58
|
+
def read_test_file
|
|
59
|
+
f = open(File.expand_path(File.dirname("__FILE__") + "../../spec/parser/test_data.txt"))
|
|
60
|
+
f.each do |line|
|
|
61
|
+
name, jsn = line.split("|")
|
|
62
|
+
if line.match(/^\s*#/) == nil && name && jsn
|
|
63
|
+
yield({:name => name, :jsn => jsn})
|
|
64
|
+
else
|
|
65
|
+
yield({:comment => line})
|
|
66
|
+
end
|
|
67
|
+
end
|
|
68
|
+
end
|
|
69
|
+
|
|
@@ -0,0 +1,235 @@
|
|
|
1
|
+
####
|
|
2
|
+
# Scientific Names Parser Test
|
|
3
|
+
#
|
|
4
|
+
# Test consists of a pipe delimited input (scientific name) and parsed output in json format
|
|
5
|
+
####
|
|
6
|
+
|
|
7
|
+
#uninomial
|
|
8
|
+
Pseudocercospora|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora","normalized":"Pseudocercospora","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"epitheton":"Pseudocercospora"}}],"positions":{"0":["uninomial",16]}}}
|
|
9
|
+
|
|
10
|
+
#uninomial with author
|
|
11
|
+
Pseudocercospora Speg.|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora Speg.","normalized":"Pseudocercospora Speg.","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"epitheton":"Pseudocercospora","authorship":"Speg.","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."]}}}],"positions":{"0":["uninomial",16],"17":["author_word",22]}}}
|
|
12
|
+
|
|
13
|
+
#uninomial with author and year
|
|
14
|
+
Pseudocercospora Speg. 1910|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora Speg. 1910","normalized":"Pseudocercospora Speg. 1910","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"epitheton":"Pseudocercospora","authorship":"Speg. 1910","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."],"year":"1910"}}}],"positions":{"0":["uninomial",16],"17":["author_word",22],"23":["year",27]}}}
|
|
15
|
+
Pseudocercospora Spegazzini, 1910|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora Spegazzini, 1910","normalized":"Pseudocercospora Spegazzini 1910","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"epitheton":"Pseudocercospora","authorship":"Spegazzini, 1910","basionymAuthorTeam":{"authorTeam":"Spegazzini","author":["Spegazzini"],"year":"1910"}}}],"positions":{"0":["uninomial",16],"17":["author_word",27],"29":["year",33]}}}
|
|
16
|
+
Platypus bicaudatulus Schedl (1935h)|{"scientificName":{"parsed":true,"verbatim":"Platypus bicaudatulus Schedl (1935h)","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"epitheton":"Platypus"},"species":{"epitheton":"bicaudatulus","authorship":"Schedl (1935h)","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",35]}}}
|
|
17
|
+
Platypus bicaudatulus Schedl (1935)|{"scientificName":{"parsed":true,"verbatim":"Platypus bicaudatulus Schedl (1935)","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"epitheton":"Platypus"},"species":{"epitheton":"bicaudatulus","authorship":"Schedl (1935)","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",34]}}}
|
|
18
|
+
Tridentella tangeroae Bruce, 198?|{"scientificName":{"parsed":true,"verbatim":"Tridentella tangeroae Bruce, 198?","normalized":"Tridentella tangeroae Bruce 198?","canonical":"Tridentella tangeroae","hybrid":false,"details":[{"genus":{"epitheton":"Tridentella"},"species":{"epitheton":"tangeroae","authorship":"Bruce, 198?","basionymAuthorTeam":{"authorTeam":"Bruce","author":["Bruce"],"year":"198?"}}}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",27],"29":["year",33]}}}
|
|
19
|
+
|
|
20
|
+
#two-letter genus names (legacy genera, not allowed anymore)
|
|
21
|
+
Ca Dyar 1914|{"scientificName":{"parsed":true,"verbatim":"Ca Dyar 1914","normalized":"Ca Dyar 1914","canonical":"Ca","hybrid":false,"details":[{"uninomial":{"epitheton":"Ca","authorship":"Dyar 1914","basionymAuthorTeam":{"authorTeam":"Dyar","author":["Dyar"],"year":"1914"}}}],"positions":{"0":["uninomial",2],"3":["author_word",7],"8":["year",12]}}}
|
|
22
|
+
Ea Distant 1911|{"scientificName":{"parsed":true,"verbatim":"Ea Distant 1911","normalized":"Ea Distant 1911","canonical":"Ea","hybrid":false,"details":[{"uninomial":{"epitheton":"Ea","authorship":"Distant 1911","basionymAuthorTeam":{"authorTeam":"Distant","author":["Distant"],"year":"1911"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
|
23
|
+
Ge Nicéville 1895|{"scientificName":{"parsed":true,"verbatim":"Ge Nic\u00e9ville 1895","normalized":"Ge Nic\u00e9ville 1895","canonical":"Ge","hybrid":false,"details":[{"uninomial":{"epitheton":"Ge","authorship":"Nic\u00e9ville 1895","basionymAuthorTeam":{"authorTeam":"Nic\u00e9ville","author":["Nic\u00e9ville"],"year":"1895"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
|
|
24
|
+
Ia Thomas 1902|{"scientificName":{"parsed":true,"verbatim":"Ia Thomas 1902","normalized":"Ia Thomas 1902","canonical":"Ia","hybrid":false,"details":[{"uninomial":{"epitheton":"Ia","authorship":"Thomas 1902","basionymAuthorTeam":{"authorTeam":"Thomas","author":["Thomas"],"year":"1902"}}}],"positions":{"0":["uninomial",2],"3":["author_word",9],"10":["year",14]}}}
|
|
25
|
+
Io Lea 1831|{"scientificName":{"parsed":true,"verbatim":"Io Lea 1831","normalized":"Io Lea 1831","canonical":"Io","hybrid":false,"details":[{"uninomial":{"epitheton":"Io","authorship":"Lea 1831","basionymAuthorTeam":{"authorTeam":"Lea","author":["Lea"],"year":"1831"}}}],"positions":{"0":["uninomial",2],"3":["author_word",6],"7":["year",11]}}}
|
|
26
|
+
Io Blanchard 1852|{"scientificName":{"parsed":true,"verbatim":"Io Blanchard 1852","normalized":"Io Blanchard 1852","canonical":"Io","hybrid":false,"details":[{"uninomial":{"epitheton":"Io","authorship":"Blanchard 1852","basionymAuthorTeam":{"authorTeam":"Blanchard","author":["Blanchard"],"year":"1852"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
|
|
27
|
+
Ix Bergroth 1916|{"scientificName":{"parsed":true,"verbatim":"Ix Bergroth 1916","normalized":"Ix Bergroth 1916","canonical":"Ix","hybrid":false,"details":[{"uninomial":{"epitheton":"Ix","authorship":"Bergroth 1916","basionymAuthorTeam":{"authorTeam":"Bergroth","author":["Bergroth"],"year":"1916"}}}],"positions":{"0":["uninomial",2],"3":["author_word",11],"12":["year",16]}}}
|
|
28
|
+
Lo Seale 1906|{"scientificName":{"parsed":true,"verbatim":"Lo Seale 1906","normalized":"Lo Seale 1906","canonical":"Lo","hybrid":false,"details":[{"uninomial":{"epitheton":"Lo","authorship":"Seale 1906","basionymAuthorTeam":{"authorTeam":"Seale","author":["Seale"],"year":"1906"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
|
29
|
+
Oa Girault 1929|{"scientificName":{"parsed":true,"verbatim":"Oa Girault 1929","normalized":"Oa Girault 1929","canonical":"Oa","hybrid":false,"details":[{"uninomial":{"epitheton":"Oa","authorship":"Girault 1929","basionymAuthorTeam":{"authorTeam":"Girault","author":["Girault"],"year":"1929"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
|
30
|
+
Ra Whitley 1931|{"scientificName":{"parsed":true,"verbatim":"Ra Whitley 1931","normalized":"Ra Whitley 1931","canonical":"Ra","hybrid":false,"details":[{"uninomial":{"epitheton":"Ra","authorship":"Whitley 1931","basionymAuthorTeam":{"authorTeam":"Whitley","author":["Whitley"],"year":"1931"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
|
31
|
+
Ty Bory de St. Vincent 1827|{"scientificName":{"parsed":true,"verbatim":"Ty Bory de St. Vincent 1827","normalized":"Ty Bory de St. Vincent 1827","canonical":"Ty","hybrid":false,"details":[{"uninomial":{"epitheton":"Ty","authorship":"Bory de St. Vincent 1827","basionymAuthorTeam":{"authorTeam":"Bory de St. Vincent","author":["Bory de St. Vincent"],"year":"1827"}}}],"positions":{"0":["uninomial",2],"3":["author_word",7],"8":["author_word",10],"11":["author_word",14],"15":["author_word",22],"23":["year",27]}}}
|
|
32
|
+
Ua Girault 1929|{"scientificName":{"parsed":true,"verbatim":"Ua Girault 1929","normalized":"Ua Girault 1929","canonical":"Ua","hybrid":false,"details":[{"uninomial":{"epitheton":"Ua","authorship":"Girault 1929","basionymAuthorTeam":{"authorTeam":"Girault","author":["Girault"],"year":"1929"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
|
33
|
+
Aa Baker 1940|{"scientificName":{"parsed":true,"verbatim":"Aa Baker 1940","normalized":"Aa Baker 1940","canonical":"Aa","hybrid":false,"details":[{"uninomial":{"epitheton":"Aa","authorship":"Baker 1940","basionymAuthorTeam":{"authorTeam":"Baker","author":["Baker"],"year":"1940"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
|
34
|
+
Ja Uéno 1955|{"scientificName":{"parsed":true,"verbatim":"Ja U\u00e9no 1955","normalized":"Ja U\u00e9no 1955","canonical":"Ja","hybrid":false,"details":[{"uninomial":{"epitheton":"Ja","authorship":"U\u00e9no 1955","basionymAuthorTeam":{"authorTeam":"U\u00e9no","author":["U\u00e9no"],"year":"1955"}}}],"positions":{"0":["uninomial",2],"3":["author_word",7],"8":["year",12]}}}
|
|
35
|
+
Zu Walters & Fitch 1960|{"scientificName":{"parsed":true,"verbatim":"Zu Walters & Fitch 1960","normalized":"Zu Walters et Fitch 1960","canonical":"Zu","hybrid":false,"details":[{"uninomial":{"epitheton":"Zu","authorship":"Walters & Fitch 1960","basionymAuthorTeam":{"authorTeam":"Walters & Fitch","author":["Walters","Fitch"],"year":"1960"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"13":["author_word",18],"19":["year",23]}}}
|
|
36
|
+
La Bleszynski 1966|{"scientificName":{"parsed":true,"verbatim":"La Bleszynski 1966","normalized":"La Bleszynski 1966","canonical":"La","hybrid":false,"details":[{"uninomial":{"epitheton":"La","authorship":"Bleszynski 1966","basionymAuthorTeam":{"authorTeam":"Bleszynski","author":["Bleszynski"],"year":"1966"}}}],"positions":{"0":["uninomial",2],"3":["author_word",13],"14":["year",18]}}}
|
|
37
|
+
Qu Durkoop|{"scientificName":{"parsed":true,"verbatim":"Qu Durkoop","normalized":"Qu Durkoop","canonical":"Qu","hybrid":false,"details":[{"uninomial":{"epitheton":"Qu","authorship":"Durkoop","basionymAuthorTeam":{"authorTeam":"Durkoop","author":["Durkoop"]}}}],"positions":{"0":["uninomial",2],"3":["author_word",10]}}}
|
|
38
|
+
As Slipinski 1982|{"scientificName":{"parsed":true,"verbatim":"As Slipinski 1982","normalized":"As Slipinski 1982","canonical":"As","hybrid":false,"details":[{"uninomial":{"epitheton":"As","authorship":"Slipinski 1982","basionymAuthorTeam":{"authorTeam":"Slipinski","author":["Slipinski"],"year":"1982"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
|
|
39
|
+
Ba Solem 1983|{"scientificName":{"parsed":true,"verbatim":"Ba Solem 1983","normalized":"Ba Solem 1983","canonical":"Ba","hybrid":false,"details":[{"uninomial":{"epitheton":"Ba","authorship":"Solem 1983","basionymAuthorTeam":{"authorTeam":"Solem","author":["Solem"],"year":"1983"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
|
40
|
+
|
|
41
|
+
#canonical binomial
|
|
42
|
+
Pseudocercospora dendrobii|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii","normalized":"Pseudocercospora dendrobii","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii"}}],"positions":{"0":["genus",16],"21":["species",30]}}}
|
|
43
|
+
|
|
44
|
+
#binomial with author and a year
|
|
45
|
+
Platypus bicaudatulus Schedl 1935|{"scientificName":{"parsed":true,"verbatim":"Platypus bicaudatulus Schedl 1935","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"epitheton":"Platypus"},"species":{"epitheton":"bicaudatulus","authorship":"Schedl 1935","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"29":["year",33]}}}
|
|
46
|
+
Platypus bicaudatulus Schedl, 1935h|{"scientificName":{"parsed":true,"verbatim":"Platypus bicaudatulus Schedl, 1935h","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"epitheton":"Platypus"},"species":{"epitheton":"bicaudatulus","authorship":"Schedl, 1935h","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",35]}}}
|
|
47
|
+
|
|
48
|
+
# whitespace names (rare, only ~50 cases)
|
|
49
|
+
#TODO Donatia novae zelandiae Hook.f.
|
|
50
|
+
#TODO Donatia novae-zelandiae Hook.f.
|
|
51
|
+
|
|
52
|
+
#binomial with several authours
|
|
53
|
+
Pseudocercospora dendrobii U. Braun & Crous|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"U. Braun & Crous","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43]}}}
|
|
54
|
+
Pseudocercospora dendrobii U. Braun et Crous|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii U. Braun et Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"U. Braun et Crous","basionymAuthorTeam":{"authorTeam":"U. Braun et Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"39":["author_word",44]}}}
|
|
55
|
+
Pseudocercospora dendrobii U. Braun and Crous|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii U. Braun and Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"U. Braun and Crous","basionymAuthorTeam":{"authorTeam":"U. Braun and Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"40":["author_word",45]}}}
|
|
56
|
+
|
|
57
|
+
#binomial with several authors and a year
|
|
58
|
+
Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
|
|
59
|
+
|
|
60
|
+
#iczn: species name with subgenus
|
|
61
|
+
Hegeter (Hegeter) intercedens Lindberg H 1950|{"scientificName":{"parsed":true,"verbatim":"Hegeter (Hegeter) intercedens Lindberg H 1950","normalized":"Hegeter (Hegeter) intercedens Lindberg H 1950","canonical":"Hegeter intercedens","hybrid":false,"details":[{"genus":{"epitheton":"Hegeter"},"subgenus":{"epitheton":"Hegeter"},"species":{"epitheton":"intercedens","authorship":"Lindberg H 1950","basionymAuthorTeam":{"authorTeam":"Lindberg H","author":["Lindberg H"],"year":"1950"}}}],"positions":{"0":["genus",7],"9":["subgenus",16],"18":["species",29],"30":["author_word",38],"39":["author_word",40],"41":["year",45]}}}
|
|
62
|
+
|
|
63
|
+
#genus with question mark
|
|
64
|
+
Ferganoconcha? oblonga|{"scientificName":{"parsed":true,"verbatim":"Ferganoconcha? oblonga","normalized":"Ferganoconcha oblonga","canonical":"Ferganoconcha oblonga","hybrid":false,"details":[{"genus":{"epitheton":"Ferganoconcha"},"species":{"epitheton":"oblonga"}}],"positions":{"0":["genus",14],"15":["species",22]}}}
|
|
65
|
+
|
|
66
|
+
#unicode utf8 characters in name
|
|
67
|
+
Rühlella|{"scientificName":{"parsed":true,"verbatim":"R\u00fchlella","normalized":"R\u00fchlella","canonical":"R\u00fchlella","hybrid":false,"details":[{"uninomial":{"epitheton":"R\u00fchlella"}}],"positions":{"0":["uninomial",8]}}}
|
|
68
|
+
Sténométope laevissimus Bibron 1855|{"scientificName":{"parsed":true,"verbatim":"St\u00e9nom\u00e9tope laevissimus Bibron 1855","normalized":"St\u00e9nom\u00e9tope laevissimus Bibron 1855","canonical":"St\u00e9nom\u00e9tope laevissimus","hybrid":false,"details":[{"genus":{"epitheton":"St\u00e9nom\u00e9tope"},"species":{"epitheton":"laevissimus","authorship":"Bibron 1855","basionymAuthorTeam":{"authorTeam":"Bibron","author":["Bibron"],"year":"1855"}}}],"positions":{"0":["genus",11],"12":["species",23],"24":["author_word",30],"31":["year",35]}}}
|
|
69
|
+
Choriozopella trägårdhi Lawrence, 1947|{"scientificName":{"parsed":true,"verbatim":"Choriozopella tr\u00e4g\u00e5rdhi Lawrence, 1947","normalized":"Choriozopella tr\u00e4g\u00e5rdhi Lawrence 1947","canonical":"Choriozopella tr\u00e4g\u00e5rdhi","hybrid":false,"details":[{"genus":{"epitheton":"Choriozopella"},"species":{"epitheton":"tr\u00e4g\u00e5rdhi","authorship":"Lawrence, 1947","basionymAuthorTeam":{"authorTeam":"Lawrence","author":["Lawrence"],"year":"1947"}}}],"positions":{"0":["genus",13],"14":["species",23],"24":["author_word",32],"34":["year",38]}}}
|
|
70
|
+
|
|
71
|
+
#digraph unicode characters
|
|
72
|
+
Læptura laetifica Dow, 1913|{"scientificName":{"parsed":true,"verbatim":"L\u00e6ptura laetifica Dow, 1913","normalized":"Laeptura laetifica Dow 1913","canonical":"Laeptura laetifica","hybrid":false,"details":[{"genus":{"epitheton":"Laeptura"},"species":{"epitheton":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
|
73
|
+
Leptura lætifica Dow, 1913|{"scientificName":{"parsed":true,"verbatim":"Leptura l\u00e6tifica Dow, 1913","normalized":"Leptura laetifica Dow 1913","canonical":"Leptura laetifica","hybrid":false,"details":[{"genus":{"epitheton":"Leptura"},"species":{"epitheton":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",20],"22":["year",26]}}}
|
|
74
|
+
Leptura leætifica Dow, 1913|{"scientificName":{"parsed":true,"verbatim":"Leptura le\u00e6tifica Dow, 1913","normalized":"Leptura leaetifica Dow 1913","canonical":"Leptura leaetifica","hybrid":false,"details":[{"genus":{"epitheton":"Leptura"},"species":{"epitheton":"leaetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
|
75
|
+
Leæptura laetifica Dow, 1913|{"scientificName":{"parsed":true,"verbatim":"Le\u00e6ptura laetifica Dow, 1913","normalized":"Leaeptura laetifica Dow 1913","canonical":"Leaeptura laetifica","hybrid":false,"details":[{"genus":{"epitheton":"Leaeptura"},"species":{"epitheton":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",8],"9":["species",18],"19":["author_word",22],"24":["year",28]}}}
|
|
76
|
+
Leœptura laetifica Dow, 1913|{"scientificName":{"parsed":true,"verbatim":"Le\u0153ptura laetifica Dow, 1913","normalized":"Leoeptura laetifica Dow 1913","canonical":"Leoeptura laetifica","hybrid":false,"details":[{"genus":{"epitheton":"Leoeptura"},"species":{"epitheton":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",8],"9":["species",18],"19":["author_word",22],"24":["year",28]}}}
|
|
77
|
+
Ærenea cognata Lacordaire, 1872|{"scientificName":{"parsed":true,"verbatim":"\u00c6renea cognata Lacordaire, 1872","normalized":"Aerenea cognata Lacordaire 1872","canonical":"Aerenea cognata","hybrid":false,"details":[{"genus":{"epitheton":"Aerenea"},"species":{"epitheton":"cognata","authorship":"Lacordaire, 1872","basionymAuthorTeam":{"authorTeam":"Lacordaire","author":["Lacordaire"],"year":"1872"}}}],"positions":{"0":["genus",6],"7":["species",14],"15":["author_word",25],"27":["year",31]}}}
|
|
78
|
+
Œdicnemus capensis|{"scientificName":{"parsed":true,"verbatim":"\u0152dicnemus capensis","normalized":"Oedicnemus capensis","canonical":"Oedicnemus capensis","hybrid":false,"details":[{"genus":{"epitheton":"Oedicnemus"},"species":{"epitheton":"capensis"}}],"positions":{"0":["genus",9],"10":["species",18]}}}
|
|
79
|
+
Œnanthe œnanthe|{"scientificName":{"parsed":true,"verbatim":"\u0152nanthe \u0153nanthe","normalized":"Oenanthe oenanthe","canonical":"Oenanthe oenanthe","hybrid":false,"details":[{"genus":{"epitheton":"Oenanthe"},"species":{"epitheton":"oenanthe"}}],"positions":{"0":["genus",7],"8":["species",15]}}}
|
|
80
|
+
|
|
81
|
+
#basionym in parenthesis
|
|
82
|
+
Zophosis persis (Chatanay, 1914)|{"scientificName":{"parsed":true,"verbatim":"Zophosis persis (Chatanay, 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"epitheton":"Zophosis"},"species":{"epitheton":"persis","authorship":"(Chatanay, 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"27":["year",31]}}}
|
|
83
|
+
Zophosis persis (Chatanay 1914)|{"scientificName":{"parsed":true,"verbatim":"Zophosis persis (Chatanay 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"epitheton":"Zophosis"},"species":{"epitheton":"persis","authorship":"(Chatanay 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"26":["year",30]}}}
|
|
84
|
+
Zophosis persis (Chatanay), 1914|{"scientificName":{"parsed":true,"verbatim":"Zophosis persis (Chatanay), 1914","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"epitheton":"Zophosis"},"species":{"epitheton":"persis","authorship":"(Chatanay), 1914","basionymAuthorTeam":{"author_team":"(Chatanay), 1914","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"28":["year",32]}}}
|
|
85
|
+
|
|
86
|
+
#binomial with basionym and combination authors
|
|
87
|
+
Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"(H.C. Burnett)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["author_word",46],"47":["author_word",52],"55":["author_word",60],"65":["year",69]}}}
|
|
88
|
+
Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"(H.C. Burnett, 1873)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"45":["year",49],"50":["author_word",52],"53":["author_word",58],"61":["author_word",66],"71":["year",75]}}}
|
|
89
|
+
Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"epitheton":"Pseudocercospora"},"species":{"epitheton":"dendrobii","authorship":"(H.C. Burnett 1873)U. Braun & Crous , 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["year",48],"49":["author_word",51],"52":["author_word",57],"60":["author_word",65],"71":["year",75]}}}
|
|
90
|
+
|
|
91
|
+
#infraspecies without rank
|
|
92
|
+
Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true,"verbatim":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum zonatum (Banker) D. Hall et D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum"},"infraspecies":[{"epitheton":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31],"33":["author_word",39],"41":["author_word",43],"44":["author_word",48],"51":["author_word",55],"56":["author_word",62],"63":["year",67]}}}
|
|
93
|
+
Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true,"verbatim":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall et D.E. Stuntz 1972","canonical":"Hydnellum Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"epitheton":"Hydnellum"},"subgenus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum"},"infraspecies":[{"epitheton":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"11":["subgenus",20],"22":["species",35],"36":["infraspecies",43],"45":["author_word",51],"53":["author_word",55],"56":["author_word",60],"63":["author_word",67],"68":["author_word",74],"75":["year",79]}}}
|
|
94
|
+
Hydnellum scrobiculatum zonatum|{"scientificName":{"parsed":true,"verbatim":"Hydnellum scrobiculatum zonatum","normalized":"Hydnellum scrobiculatum zonatum","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum"},"infraspecies":[{"epitheton":"zonatum","rank":"n\/a"}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31]}}}
|
|
95
|
+
|
|
96
|
+
#infraspecies with rank
|
|
97
|
+
Aus bus Linn. var. bus|{"scientificName":{"parsed":true,"verbatim":"Aus bus Linn. var. bus","normalized":"Aus bus Linn. var. bus","canonical":"Aus bus bus","hybrid":false,"details":[{"genus":{"epitheton":"Aus"},"species":{"epitheton":"bus","authorship":"Linn.","basionymAuthorTeam":{"authorTeam":"Linn.","author":["Linn."]}},"infraspecies":[{"epitheton":"bus","rank":"var."}]}],"positions":{"0":["genus",3],"4":["species",7],"8":["author_word",13],"19":["infraspecies",22]}}}
|
|
98
|
+
Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987|{"scientificName":{"parsed":true,"verbatim":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987","normalized":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987","canonical":"Agalinis purpurea borealis","hybrid":false,"details":[{"genus":{"epitheton":"Agalinis"},"species":{"epitheton":"purpurea","authorship":"(L.) Briton","combinationAuthorTeam":{"authorTeam":"Briton","author":["Briton"]},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}},"infraspecies":[{"epitheton":"borealis","rank":"var.","authorship":"(Berg.) Peterson 1987","combinationAuthorTeam":{"authorTeam":"Peterson","author":["Peterson"],"year":"1987"},"basionymAuthorTeam":{"authorTeam":"Berg.","author":["Berg."]}}]}],"positions":{"0":["genus",8],"9":["species",17],"19":["author_word",21],"23":["author_word",29],"35":["infraspecies",43],"45":["author_word",50],"52":["author_word",60],"61":["year",65]}}}
|
|
99
|
+
Callideriphus flavicollis morph. reductus Fuchs 1961|{"scientificName":{"parsed":true,"verbatim":"Callideriphus flavicollis morph. reductus Fuchs 1961","normalized":"Callideriphus flavicollis morph. reductus Fuchs 1961","canonical":"Callideriphus flavicollis reductus","hybrid":false,"details":[{"genus":{"epitheton":"Callideriphus"},"species":{"epitheton":"flavicollis"},"infraspecies":[{"epitheton":"reductus","rank":"morph.","authorship":"Fuchs 1961","basionymAuthorTeam":{"authorTeam":"Fuchs","author":["Fuchs"],"year":"1961"}}]}],"positions":{"0":["genus",13],"14":["species",25],"33":["infraspecies",41],"42":["author_word",47],"48":["year",52]}}}
|
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100
|
+
Caulerpa cupressoides forma nuda|{"scientificName":{"parsed":true,"verbatim":"Caulerpa cupressoides forma nuda","normalized":"Caulerpa cupressoides f. nuda","canonical":"Caulerpa cupressoides nuda","hybrid":false,"details":[{"genus":{"epitheton":"Caulerpa"},"species":{"epitheton":"cupressoides"},"infraspecies":[{"epitheton":"nuda","rank":"f."}]}],"positions":{"0":["genus",8],"9":["species",21],"28":["infraspecies",32]}}}
|
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101
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+
Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó|{"scientificName":{"parsed":true,"verbatim":"Chlorocyperus glaber form. fasciculariforme (Lojac.) So\u00f3","normalized":"Chlorocyperus glaber f. fasciculariforme (Lojac.) So\u00f3","canonical":"Chlorocyperus glaber fasciculariforme","hybrid":false,"details":[{"genus":{"epitheton":"Chlorocyperus"},"species":{"epitheton":"glaber"},"infraspecies":[{"epitheton":"fasciculariforme","rank":"f.","authorship":"(Lojac.) So\u00f3","combinationAuthorTeam":{"authorTeam":"So\u00f3","author":["So\u00f3"]},"basionymAuthorTeam":{"authorTeam":"Lojac.","author":["Lojac."]}}]}],"positions":{"0":["genus",13],"14":["species",20],"27":["infraspecies",43],"45":["author_word",51],"53":["author_word",56]}}}
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102
|
+
Sphaerotheca fuliginea f. dahliae Movss. 1967|{"scientificName":{"parsed":true,"verbatim":"Sphaerotheca fuliginea f. dahliae Movss. 1967","normalized":"Sphaerotheca fuliginea f. dahliae Movss. 1967","canonical":"Sphaerotheca fuliginea dahliae","hybrid":false,"details":[{"genus":{"epitheton":"Sphaerotheca"},"species":{"epitheton":"fuliginea"},"infraspecies":[{"epitheton":"dahliae","rank":"f.","authorship":"Movss. 1967","basionymAuthorTeam":{"authorTeam":"Movss.","author":["Movss."],"year":"1967"}}]}],"positions":{"0":["genus",12],"16":["species",25],"36":["infraspecies",43],"47":["author_word",53],"58":["year",62]}}}
|
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103
|
+
Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true,"verbatim":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay","normalized":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay","canonical":"Polypodium vulgare mantoniae","hybrid":false,"details":[{"genus":{"epitheton":"Polypodium"},"species":{"epitheton":"vulgare"},"infraspecies":[{"epitheton":"mantoniae","rank":"nothosubsp.","authorship":"(Rothm.) Schidlay","combinationAuthorTeam":{"authorTeam":"Schidlay","author":["Schidlay"]},"basionymAuthorTeam":{"authorTeam":"Rothm.","author":["Rothm."]}}]}],"positions":{"0":["genus",10],"11":["species",18],"31":["infraspecies",40],"42":["author_word",48],"50":["author_word",58]}}}
|
|
104
|
+
|
|
105
|
+
#infraspecies_multiple
|
|
106
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+
Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true,"verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall et D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum parvum","hybrid":false,"details":[{"genus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum"},"infraspecies":[{"epitheton":"zonatum","rank":"var."},{"epitheton":"parvum","rank":"f.","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"29":["infraspecies",36],"40":["infraspecies",46],"48":["author_word",54],"56":["author_word",58],"59":["author_word",63],"66":["author_word",70],"71":["author_word",77],"78":["year",82]}}}
|
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107
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+
Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true,"verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek","normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. et Heldr.) Hayek","canonical":"Senecio fuchsii fuchsii expansus","hybrid":false,"details":[{"genus":{"epitheton":"Senecio"},"species":{"epitheton":"fuchsii","authorship":"C.C.Gmel.","basionymAuthorTeam":{"authorTeam":"C.C.Gmel.","author":["C.C.Gmel."]}},"infraspecies":[{"epitheton":"fuchsii","rank":"subsp."},{"epitheton":"expansus","rank":"var.","authorship":"(Boiss. & Heldr.) Hayek","combinationAuthorTeam":{"authorTeam":"Hayek","author":["Hayek"]},"basionymAuthorTeam":{"authorTeam":"Boiss. & Heldr.","author":["Boiss.","Heldr."]}}]}],"positions":{"0":["genus",7],"8":["species",15],"16":["author_word",25],"33":["infraspecies",40],"46":["infraspecies",54],"56":["author_word",62],"65":["author_word",71],"73":["author_word",78]}}}
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108
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+
Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii|{"scientificName":{"parsed":true,"verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii","normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii","canonical":"Senecio fuchsii fuchsii fuchsii","hybrid":false,"details":[{"genus":{"epitheton":"Senecio"},"species":{"epitheton":"fuchsii","authorship":"C.C.Gmel.","basionymAuthorTeam":{"authorTeam":"C.C.Gmel.","author":["C.C.Gmel."]}},"infraspecies":[{"epitheton":"fuchsii","rank":"subsp."},{"epitheton":"fuchsii","rank":"var."}]}],"positions":{"0":["genus",7],"8":["species",15],"16":["author_word",25],"33":["infraspecies",40],"46":["infraspecies",53]}}}
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109
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+
|
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110
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+
#unknown authorship
|
|
111
|
+
Tragacantha leporina (?) Kuntze|{"scientificName":{"parsed":true,"verbatim":"Tragacantha leporina (?) Kuntze","normalized":"Tragacantha leporina (?) Kuntze","canonical":"Tragacantha leporina","hybrid":false,"details":[{"genus":{"epitheton":"Tragacantha"},"species":{"epitheton":"leporina","authorship":"(?) Kuntze","combinationAuthorTeam":{"authorTeam":"Kuntze","author":["Kuntze"]},"basionymAuthorTeam":{"authorTeam":"(?)","author":["?"]}}}],"positions":{"0":["genus",11],"12":["species",20],"22":["unknown_author",23],"25":["author_word",31]}}}
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112
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+
Lachenalia tricolor var. nelsonii (auct.) Baker|{"scientificName":{"parsed":true,"verbatim":"Lachenalia tricolor var. nelsonii (auct.) Baker","normalized":"Lachenalia tricolor var. nelsonii (auct.) Baker","canonical":"Lachenalia tricolor nelsonii","hybrid":false,"details":[{"genus":{"epitheton":"Lachenalia"},"species":{"epitheton":"tricolor"},"infraspecies":[{"epitheton":"nelsonii","rank":"var.","authorship":"(auct.) Baker","combinationAuthorTeam":{"authorTeam":"Baker","author":["Baker"]},"basionymAuthorTeam":{"authorTeam":"auct.","author":["unknown"]}}]}],"positions":{"0":["genus",10],"11":["species",19],"25":["infraspecies",33],"35":["unknown_author",40],"42":["author_word",47]}}}
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113
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+
Lachenalia tricolor var. nelsonii (anon.) Baker|{"scientificName":{"parsed":true,"verbatim":"Lachenalia tricolor var. nelsonii (anon.) Baker","normalized":"Lachenalia tricolor var. nelsonii (anon.) Baker","canonical":"Lachenalia tricolor nelsonii","hybrid":false,"details":[{"genus":{"epitheton":"Lachenalia"},"species":{"epitheton":"tricolor"},"infraspecies":[{"epitheton":"nelsonii","rank":"var.","authorship":"(anon.) Baker","combinationAuthorTeam":{"authorTeam":"Baker","author":["Baker"]},"basionymAuthorTeam":{"authorTeam":"anon.","author":["unknown"]}}]}],"positions":{"0":["genus",10],"11":["species",19],"25":["infraspecies",33],"35":["unknown_author",40],"42":["author_word",47]}}}
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114
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+
Lachenalia tricolor var. nelsonii (ht.) Baker|{"scientificName":{"parsed":true,"verbatim":"Lachenalia tricolor var. nelsonii (ht.) Baker","normalized":"Lachenalia tricolor var. nelsonii (ht.) Baker","canonical":"Lachenalia tricolor nelsonii","hybrid":false,"details":[{"genus":{"epitheton":"Lachenalia"},"species":{"epitheton":"tricolor"},"infraspecies":[{"epitheton":"nelsonii","rank":"var.","authorship":"(ht.) Baker","combinationAuthorTeam":{"authorTeam":"Baker","author":["Baker"]},"basionymAuthorTeam":{"authorTeam":"ht.","author":["unknown"]}}]}],"positions":{"0":["genus",10],"11":["species",19],"25":["infraspecies",33],"35":["unknown_author",38],"40":["author_word",45]}}}
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115
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+
Lachenalia tricolor var. nelsonii (hort.) Baker|{"scientificName":{"parsed":true,"verbatim":"Lachenalia tricolor var. nelsonii (hort.) Baker","normalized":"Lachenalia tricolor var. nelsonii (hort.) Baker","canonical":"Lachenalia tricolor nelsonii","hybrid":false,"details":[{"genus":{"epitheton":"Lachenalia"},"species":{"epitheton":"tricolor"},"infraspecies":[{"epitheton":"nelsonii","rank":"var.","authorship":"(hort.) Baker","combinationAuthorTeam":{"authorTeam":"Baker","author":["Baker"]},"basionymAuthorTeam":{"authorTeam":"hort.","author":["unknown"]}}]}],"positions":{"0":["genus",10],"11":["species",19],"25":["infraspecies",33],"35":["unknown_author",40],"42":["author_word",47]}}}
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116
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+
Puya acris ht.|{"scientificName":{"parsed":true,"verbatim":"Puya acris ht.","normalized":"Puya acris ht.","canonical":"Puya acris","hybrid":false,"details":[{"genus":{"epitheton":"Puya"},"species":{"epitheton":"acris","authorship":"ht.","basionymAuthorTeam":{"authorTeam":"ht.","author":["unknown"]}}}],"positions":{"0":["genus",4],"5":["species",10],"11":["unknown_author",14]}}}
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117
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+
Puya acris anon.|{"scientificName":{"parsed":true,"verbatim":"Puya acris anon.","normalized":"Puya acris anon.","canonical":"Puya acris","hybrid":false,"details":[{"genus":{"epitheton":"Puya"},"species":{"epitheton":"acris","authorship":"anon.","basionymAuthorTeam":{"authorTeam":"anon.","author":["unknown"]}}}],"positions":{"0":["genus",4],"5":["species",10],"11":["unknown_author",16]}}}
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118
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+
Puya acris hort.|{"scientificName":{"parsed":true,"verbatim":"Puya acris hort.","normalized":"Puya acris hort.","canonical":"Puya acris","hybrid":false,"details":[{"genus":{"epitheton":"Puya"},"species":{"epitheton":"acris","authorship":"hort.","basionymAuthorTeam":{"authorTeam":"hort.","author":["unknown"]}}}],"positions":{"0":["genus",4],"5":["species",10],"11":["unknown_author",16]}}}
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119
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+
Puya acris auct.|{"scientificName":{"parsed":true,"verbatim":"Puya acris auct.","normalized":"Puya acris auct.","canonical":"Puya acris","hybrid":false,"details":[{"genus":{"epitheton":"Puya"},"species":{"epitheton":"acris","authorship":"auct.","basionymAuthorTeam":{"authorTeam":"auct.","author":["unknown"]}}}],"positions":{"0":["genus",4],"5":["species",10],"11":["unknown_author",16]}}}
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120
|
+
|
|
121
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+
#miscellaneous names
|
|
122
|
+
Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"parsed":true,"verbatim":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet","normalized":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter et Burdet","canonical":"Fagus sylvatica orientalis","hybrid":false,"details":[{"genus":{"epitheton":"Fagus"},"species":{"epitheton":"sylvatica"},"infraspecies":[{"epitheton":"orientalis","rank":"subsp.","authorship":"(Lipsky) Greuter & Burdet","combinationAuthorTeam":{"authorTeam":"Greuter & Burdet","author":["Greuter","Burdet"]},"basionymAuthorTeam":{"authorTeam":"Lipsky","author":["Lipsky"]}}]}],"positions":{"0":["genus",5],"6":["species",15],"23":["infraspecies",33],"35":["author_word",41],"43":["author_word",50],"53":["author_word",59]}}}
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123
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+
Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"parsed":true,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"epitheton":"Stagonospora"},"species":{"epitheton":"polyspora","authorship":"M.T. Lucas & Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas & Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"36":["author_word",41],"42":["author_word",44],"45":["author_word",51],"52":["year",56]}}}
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124
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+
Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"parsed":true,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"epitheton":"Stagonospora"},"species":{"epitheton":"polyspora","authorship":"M.T. Lucas et Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas et Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"37":["author_word",42],"43":["author_word",45],"46":["author_word",52],"53":["year",57]}}}
|
|
125
|
+
Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom et Aptroot 2001","canonical":"Cladoniicola staurospora","hybrid":false,"details":[{"genus":{"epitheton":"Cladoniicola"},"species":{"epitheton":"staurospora","authorship":"Diederich, van den Boom & Aptroot 2001","basionymAuthorTeam":{"authorTeam":"Diederich, van den Boom & Aptroot","author":["Diederich","van den Boom","Aptroot"],"year":"2001"}}}],"positions":{"0":["genus",12],"13":["species",24],"25":["author_word",34],"36":["author_word",39],"40":["author_word",43],"44":["author_word",48],"51":["author_word",58],"59":["year",63]}}}
|
|
126
|
+
Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true,"verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981","normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman et E.A. Herrm.) Van der Walt et Arx 1981","canonical":"Yarrowia lipolytica lipolytica","hybrid":false,"details":[{"genus":{"epitheton":"Yarrowia"},"species":{"epitheton":"lipolytica"},"infraspecies":[{"epitheton":"lipolytica","rank":"var.","authorship":"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981","combinationAuthorTeam":{"authorTeam":"Van der Walt & Arx","author":["Van der Walt","Arx"],"year":"1981"},"basionymAuthorTeam":{"authorTeam":"Wick., Kurtzman & E.A. Herrm.","author":["Wick.","Kurtzman","E.A. Herrm."]}}]}],"positions":{"0":["genus",8],"9":["species",19],"25":["infraspecies",35],"37":["author_word",42],"44":["author_word",52],"55":["author_word",59],"60":["author_word",66],"68":["author_word",71],"72":["author_word",75],"76":["author_word",80],"83":["author_word",86],"87":["year",91]}}}
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|
127
|
+
Physalospora rubiginosa (Fr.) anon.|{"scientificName":{"parsed":true,"verbatim":"Physalospora rubiginosa (Fr.) anon.","normalized":"Physalospora rubiginosa (Fr.) anon.","canonical":"Physalospora rubiginosa","hybrid":false,"details":[{"genus":{"epitheton":"Physalospora"},"species":{"epitheton":"rubiginosa","authorship":"(Fr.) anon.","combinationAuthorTeam":{"authorTeam":"anon.","author":["unknown"]},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",28],"30":["unknown_author",35]}}}
|
|
128
|
+
Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true,"verbatim":"Pleurotus \u00ebous (Berk.) Sacc. 1887","normalized":"Pleurotus \u00ebous (Berk.) Sacc. 1887","canonical":"Pleurotus \u00ebous","hybrid":false,"details":[{"genus":{"epitheton":"Pleurotus"},"species":{"epitheton":"\u00ebous","authorship":"(Berk.) Sacc. 1887","combinationAuthorTeam":{"authorTeam":"Sacc.","author":["Sacc."],"year":"1887"},"basionymAuthorTeam":{"authorTeam":"Berk.","author":["Berk."]}}}],"positions":{"0":["genus",9],"10":["species",14],"16":["author_word",21],"23":["author_word",28],"29":["year",33]}}}
|
|
129
|
+
Lecanora wetmorei Śliwa 2004|{"scientificName":{"parsed":true,"verbatim":"Lecanora wetmorei \u015aliwa 2004","normalized":"Lecanora wetmorei \u015aliwa 2004","canonical":"Lecanora wetmorei","hybrid":false,"details":[{"genus":{"epitheton":"Lecanora"},"species":{"epitheton":"wetmorei","authorship":"\u015aliwa 2004","basionymAuthorTeam":{"authorTeam":"\u015aliwa","author":["\u015aliwa"],"year":"2004"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"24":["year",28]}}}
|
|
130
|
+
Calicium furfuraceum * furfuraceum (L.) Pers. 1797|{"scientificName":{"parsed":true,"verbatim":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797","normalized":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797","canonical":"Calicium furfuraceum furfuraceum","hybrid":false,"details":[{"genus":{"epitheton":"Calicium"},"species":{"epitheton":"furfuraceum"},"infraspecies":[{"epitheton":"furfuraceum","rank":"*","authorship":"(L.) Pers. 1797","combinationAuthorTeam":{"authorTeam":"Pers.","author":["Pers."],"year":"1797"},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}]}],"positions":{"0":["genus",8],"9":["species",20],"23":["infraspecies",34],"36":["author_word",38],"40":["author_word",45],"46":["year",50]}}}
|
|
131
|
+
Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882|{"scientificName":{"parsed":true,"verbatim":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882","normalized":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882","canonical":"Exobasidium vaccinii andromedae","hybrid":false,"details":[{"genus":{"epitheton":"Exobasidium"},"species":{"epitheton":"vaccinii"},"infraspecies":[{"epitheton":"andromedae","rank":"**","authorship":"(P. Karst.) P. Karst. 1882","combinationAuthorTeam":{"authorTeam":"P. Karst.","author":["P. Karst."],"year":"1882"},"basionymAuthorTeam":{"authorTeam":"P. Karst.","author":["P. Karst."]}}]}],"positions":{"0":["genus",11],"12":["species",20],"24":["infraspecies",34],"36":["author_word",38],"39":["author_word",45],"47":["author_word",49],"50":["author_word",56],"57":["year",61]}}}
|
|
132
|
+
Urceolaria scruposa **** clausa Flot. 1849|{"scientificName":{"parsed":true,"verbatim":"Urceolaria scruposa **** clausa Flot. 1849","normalized":"Urceolaria scruposa **** clausa Flot. 1849","canonical":"Urceolaria scruposa clausa","hybrid":false,"details":[{"genus":{"epitheton":"Urceolaria"},"species":{"epitheton":"scruposa"},"infraspecies":[{"epitheton":"clausa","rank":"****","authorship":"Flot. 1849","basionymAuthorTeam":{"authorTeam":"Flot.","author":["Flot."],"year":"1849"}}]}],"positions":{"0":["genus",10],"11":["species",19],"25":["infraspecies",31],"32":["author_word",37],"38":["year",42]}}}
|
|
133
|
+
Cortinarius angulatus B gracilescens Fr. 1838|{"scientificName":{"parsed":true,"verbatim":"Cortinarius angulatus B gracilescens Fr. 1838","normalized":"Cortinarius angulatus B gracilescens Fr. 1838","canonical":"Cortinarius angulatus gracilescens","hybrid":false,"details":[{"genus":{"epitheton":"Cortinarius"},"species":{"epitheton":"angulatus","authorship":"B","basionymAuthorTeam":{"authorTeam":"B","author":["B"]}},"infraspecies":[{"epitheton":"gracilescens","rank":"n\/a","authorship":"Fr. 1838","basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."],"year":"1838"}}]}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",23],"24":["infraspecies",36],"37":["author_word",40],"41":["year",45]}}}
|
|
134
|
+
Cyathicula scelobelonium|{"scientificName":{"parsed":true,"verbatim":"Cyathicula scelobelonium","normalized":"Cyathicula scelobelonium","canonical":"Cyathicula scelobelonium","hybrid":false,"details":[{"genus":{"epitheton":"Cyathicula"},"species":{"epitheton":"scelobelonium"}}],"positions":{"0":["genus",10],"11":["species",24]}}}
|
|
135
|
+
Tuber liui A S. Xu 1999|{"scientificName":{"parsed":true,"verbatim":"Tuber liui A S. Xu 1999","normalized":"Tuber liui A S. Xu 1999","canonical":"Tuber liui","hybrid":false,"details":[{"genus":{"epitheton":"Tuber"},"species":{"epitheton":"liui","authorship":"A S. Xu 1999","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"],"year":"1999"}}}],"positions":{"0":["genus",5],"6":["species",10],"11":["author_word",1],"13":["author_word",2],"16":["author_word",2],"19":["year",23]}}}
|
|
136
|
+
Xylaria potentillae A S. Xu|{"scientificName":{"parsed":true,"verbatim":"Xylaria potentillae A S. Xu","normalized":"Xylaria potentillae A S. Xu","canonical":"Xylaria potentillae","hybrid":false,"details":[{"genus":{"epitheton":"Xylaria"},"species":{"epitheton":"potentillae","authorship":"A S. Xu","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"]}}}],"positions":{"0":["genus",7],"8":["species",19],"20":["author_word",1],"22":["author_word",2],"25":["author_word",2]}}}
|
|
137
|
+
Agaricus squamula Berk. & M.A. Curtis 1860|{"scientificName":{"parsed":true,"verbatim":"Agaricus squamula Berk. & M.A. Curtis 1860","normalized":"Agaricus squamula Berk. et M.A. Curtis 1860","canonical":"Agaricus squamula","hybrid":false,"details":[{"genus":{"epitheton":"Agaricus"},"species":{"epitheton":"squamula","authorship":"Berk. & M.A. Curtis 1860","basionymAuthorTeam":{"authorTeam":"Berk. & M.A. Curtis","author":["Berk.","M.A. Curtis"],"year":"1860"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"26":["author_word",30],"31":["author_word",37],"38":["year",42]}}}
|
|
138
|
+
Peltula coriacea Büdel, Henssen & Wessels 1986|{"scientificName":{"parsed":true,"verbatim":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","normalized":"Peltula coriacea B\u00fcdel, Henssen et Wessels 1986","canonical":"Peltula coriacea","hybrid":false,"details":[{"genus":{"epitheton":"Peltula"},"species":{"epitheton":"coriacea","authorship":"B\u00fcdel, Henssen & Wessels 1986","basionymAuthorTeam":{"authorTeam":"B\u00fcdel, Henssen & Wessels","author":["B\u00fcdel","Henssen","Wessels"],"year":"1986"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",22],"24":["author_word",31],"34":["author_word",41],"42":["year",46]}}}
|
|
139
|
+
Saccharomyces drosophilae anon.|{"scientificName":{"parsed":true,"verbatim":"Saccharomyces drosophilae anon.","normalized":"Saccharomyces drosophilae anon.","canonical":"Saccharomyces drosophilae","hybrid":false,"details":[{"genus":{"epitheton":"Saccharomyces"},"species":{"epitheton":"drosophilae","authorship":"anon.","basionymAuthorTeam":{"authorTeam":"anon.","author":["unknown"]}}}],"positions":{"0":["genus",13],"14":["species",25],"26":["unknown_author",31]}}}
|
|
140
|
+
Abacetus laevicollis de Chaudoir, 1869|{"scientificName":{"parsed":true,"verbatim":"Abacetus laevicollis de Chaudoir, 1869","normalized":"Abacetus laevicollis de Chaudoir 1869","canonical":"Abacetus laevicollis","hybrid":false,"details":[{"genus":{"epitheton":"Abacetus"},"species":{"epitheton":"laevicollis","authorship":"de Chaudoir, 1869","basionymAuthorTeam":{"authorTeam":"de Chaudoir","author":["de Chaudoir"],"year":"1869"}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"24":["author_word",32],"34":["year",38]}}}
|
|
141
|
+
Gastrosericus eremorum von Beaumont 1955|{"scientificName":{"parsed":true,"verbatim":"Gastrosericus eremorum von Beaumont 1955","normalized":"Gastrosericus eremorum von Beaumont 1955","canonical":"Gastrosericus eremorum","hybrid":false,"details":[{"genus":{"epitheton":"Gastrosericus"},"species":{"epitheton":"eremorum","authorship":"von Beaumont 1955","basionymAuthorTeam":{"authorTeam":"von Beaumont","author":["von Beaumont"],"year":"1955"}}}],"positions":{"0":["genus",13],"14":["species",22],"23":["author_word",26],"27":["author_word",35],"36":["year",40]}}}
|
|
142
|
+
Cypraeovula (Luponia) amphithales perdentata|{"scientificName":{"parsed":true,"verbatim":"Cypraeovula (Luponia) amphithales perdentata","normalized":"Cypraeovula (Luponia) amphithales perdentata","canonical":"Cypraeovula Luponia amphithales perdentata","hybrid":false,"details":[{"genus":{"epitheton":"Cypraeovula"},"subgenus":{"epitheton":"Luponia"},"species":{"epitheton":"amphithales"},"infraspecies":[{"epitheton":"perdentata","rank":"n\/a"}]}],"positions":{"0":["genus",11],"13":["subgenus",20],"22":["species",33],"34":["infraspecies",44]}}}
|
|
143
|
+
Polyrhachis orsyllus nat musculus Forel 1901|{"scientificName":{"parsed":true,"verbatim":"Polyrhachis orsyllus nat musculus Forel 1901","normalized":"Polyrhachis orsyllus nat musculus Forel 1901","canonical":"Polyrhachis orsyllus musculus","hybrid":false,"details":[{"genus":{"epitheton":"Polyrhachis"},"species":{"epitheton":"orsyllus"},"infraspecies":[{"epitheton":"musculus","rank":"nat","authorship":"Forel 1901","basionymAuthorTeam":{"authorTeam":"Forel","author":["Forel"],"year":"1901"}}]}],"positions":{"0":["genus",11],"12":["species",20],"25":["infraspecies",33],"34":["author_word",39],"40":["year",44]}}}
|
|
144
|
+
Latrodectus 13-guttatus Thorell, 1875|{"scientificName":{"parsed":true,"verbatim":"Latrodectus 13-guttatus Thorell, 1875","normalized":"Latrodectus 13-guttatus Thorell 1875","canonical":"Latrodectus 13-guttatus","hybrid":false,"details":[{"genus":{"epitheton":"Latrodectus"},"species":{"epitheton":"13-guttatus","authorship":"Thorell, 1875","basionymAuthorTeam":{"authorTeam":"Thorell","author":["Thorell"],"year":"1875"}}}],"positions":{"0":["genus",11],"12":["species",23],"24":["author_word",31],"33":["year",37]}}}
|
|
145
|
+
Latrodectus 3-guttatus Thorell 1875|{"scientificName":{"parsed":true,"verbatim":"Latrodectus 3-guttatus Thorell 1875","normalized":"Latrodectus 3-guttatus Thorell 1875","canonical":"Latrodectus 3-guttatus","hybrid":false,"details":[{"genus":{"epitheton":"Latrodectus"},"species":{"epitheton":"3-guttatus","authorship":"Thorell 1875","basionymAuthorTeam":{"authorTeam":"Thorell","author":["Thorell"],"year":"1875"}}}],"positions":{"0":["genus",11],"12":["species",22],"23":["author_word",30],"31":["year",35]}}}
|
|
146
|
+
|
|
147
|
+
#names with status at the end
|
|
148
|
+
Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.","normalized":"Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.","canonical":"Arthopyrenia hyalospora","hybrid":false,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora","authorship":"(Nyl.) R.C. Harris","combinationAuthorTeam":{"authorTeam":"R.C. Harris ","author":["R.C. Harris"]},"basionymAuthorTeam":{"authorTeam":"Nyl.","author":["Nyl."]}},"status":"comb. nov."}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",29],"31":["author_word",35],"36":["author_word",42]}}}
|
|
149
|
+
|
|
150
|
+
#names with ex authors
|
|
151
|
+
Arthopyrenia hyalospora (Nyl. ex Banker) R.C. Harris|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora (Nyl. ex Banker) R.C. Harris","normalized":"Arthopyrenia hyalospora (Nyl. ex Banker) R.C. Harris","canonical":"Arthopyrenia hyalospora","hybrid":false,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora","authorship":"(Nyl. ex Banker) R.C. Harris","combinationAuthorTeam":{"authorTeam":"R.C. Harris","author":["R.C. Harris"]},"basionymAuthorTeam":{"authorTeam":"Nyl.","author":["Nyl."],"exAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",29],"33":["author_word",39],"41":["author_word",45],"46":["author_word",52]}}}
|
|
152
|
+
Arthopyrenia hyalospora Nyl. ex Banker|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora Nyl. ex Banker","normalized":"Arthopyrenia hyalospora Nyl. ex Banker","canonical":"Arthopyrenia hyalospora","hybrid":false,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora","authorship":"Nyl. ex Banker","basionymAuthorTeam":{"authorTeam":"Nyl.","author":["Nyl."],"exAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}}}],"positions":{"0":["genus",12],"13":["species",23],"24":["author_word",28],"32":["author_word",38]}}}
|
|
153
|
+
Glomopsis lonicerae Peck ex C.J. Gould 1945|{"scientificName":{"parsed":true,"verbatim":"Glomopsis lonicerae Peck ex C.J. Gould 1945","normalized":"Glomopsis lonicerae Peck ex C.J. Gould 1945","canonical":"Glomopsis lonicerae","hybrid":false,"details":[{"genus":{"epitheton":"Glomopsis"},"species":{"epitheton":"lonicerae","authorship":"Peck ex C.J. Gould 1945","basionymAuthorTeam":{"authorTeam":"Peck","author":["Peck"],"exAuthorTeam":{"authorTeam":"C.J. Gould","author":["C.J. Gould"],"year":"1945"}}}}],"positions":{"0":["genus",9],"10":["species",19],"20":["author_word",24],"28":["author_word",32],"33":["author_word",38],"39":["year",43]}}}
|
|
154
|
+
Acanthobasidium delicatum (Wakef.) Oberw. ex Jülich 1979|{"scientificName":{"parsed":true,"verbatim":"Acanthobasidium delicatum (Wakef.) Oberw. ex J\u00fclich 1979","normalized":"Acanthobasidium delicatum (Wakef.) Oberw. ex J\u00fclich 1979","canonical":"Acanthobasidium delicatum","hybrid":false,"details":[{"genus":{"epitheton":"Acanthobasidium"},"species":{"epitheton":"delicatum","authorship":"(Wakef.) Oberw. ex J\u00fclich 1979","combinationAuthorTeam":{"authorTeam":"Oberw.","author":["Oberw."],"exAuthorTeam":{"authorTeam":"J\u00fclich","author":["J\u00fclich"],"year":"1979"}},"basionymAuthorTeam":{"authorTeam":"Wakef.","author":["Wakef."]}}}],"positions":{"0":["genus",15],"16":["species",25],"27":["author_word",33],"35":["author_word",41],"45":["author_word",51],"52":["year",56]}}}
|
|
155
|
+
Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897|{"scientificName":{"parsed":true,"verbatim":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","canonical":"Mycosphaerella eryngii","hybrid":false,"details":[{"genus":{"epitheton":"Mycosphaerella"},"species":{"epitheton":"eryngii","authorship":"(Fr. ex Duby) Johanson ex Oudem. 1897","combinationAuthorTeam":{"authorTeam":"Johanson","author":["Johanson"],"exAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."],"exAuthorTeam":{"authorTeam":"Duby","author":["Duby"]}}}}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"31":["author_word",35],"37":["author_word",45],"49":["author_word",55],"56":["year",60]}}}
|
|
156
|
+
Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897|{"scientificName":{"parsed":true,"verbatim":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"epitheton":"Mycosphaerella"},"species":{"epitheton":"eryngii","authorship":"(Fr. Duby)","basionymAuthorTeam":{"authorTeam":"Fr. Duby","author":["Fr. Duby"]}},"infraspecies":[{"epitheton":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"28":["author_word",32],"34":["infraspecies",36],"37":["author_word",43],"44":["year",48]}}}
|
|
157
|
+
Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897|{"scientificName":{"parsed":true,"verbatim":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"epitheton":"Mycosphaerella"},"species":{"epitheton":"eryngii","authorship":"(Fr.ex Duby)","basionymAuthorTeam":{"authorTeam":"Fr.ex Duby","author":["Fr.ex Duby"]}},"infraspecies":[{"epitheton":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",29],"30":["author_word",34],"36":["infraspecies",38],"39":["author_word",45],"46":["year",50]}}}
|
|
158
|
+
Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937|{"scientificName":{"parsed":true,"verbatim":"Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937","normalized":"Salmonella werahensis (Castellani) Hauduroy et Ehringer ex Hauduroy 1937","canonical":"Salmonella werahensis","hybrid":false,"details":[{"genus":{"epitheton":"Salmonella"},"species":{"epitheton":"werahensis","authorship":"(Castellani) Hauduroy and Ehringer in Hauduroy 1937","combinationAuthorTeam":{"authorTeam":"Hauduroy and Ehringer","author":["Hauduroy","Ehringer"],"exAuthorTeam":{"authorTeam":"Hauduroy","author":["Hauduroy"],"year":"1937"}},"basionymAuthorTeam":{"authorTeam":"Castellani","author":["Castellani"]}}}],"positions":{"0":["genus",10],"11":["species",21],"23":["author_word",33],"35":["author_word",43],"48":["author_word",56],"60":["author_word",68],"69":["year",73]}}}
|
|
159
|
+
|
|
160
|
+
#named hybrids
|
|
161
|
+
×Agropogon P. Fourn. 1934|{"scientificName":{"parsed":true,"verbatim":"\u00d7Agropogon P. Fourn. 1934","normalized":"\u00d7 Agropogon P. Fourn. 1934","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon","authorship":"P. Fourn. 1934","basionymAuthorTeam":{"authorTeam":"P. Fourn.","author":["P. Fourn."],"year":"1934"}}}],"positions":{"1":["uninomial",10],"11":["author_word",13],"14":["author_word",20],"21":["year",25]}}}
|
|
162
|
+
xAgropogon P. Fourn.|{"scientificName":{"parsed":true,"verbatim":"xAgropogon P. Fourn.","normalized":"\u00d7 Agropogon P. Fourn.","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon","authorship":"P. Fourn.","basionymAuthorTeam":{"authorTeam":"P. Fourn.","author":["P. Fourn."]}}}],"positions":{"1":["uninomial",10],"11":["author_word",13],"14":["author_word",20]}}}
|
|
163
|
+
XAgropogon P.Fourn.|{"scientificName":{"parsed":true,"verbatim":"XAgropogon P.Fourn.","normalized":"\u00d7 Agropogon P.Fourn.","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon","authorship":"P.Fourn.","basionymAuthorTeam":{"authorTeam":"P.Fourn.","author":["P.Fourn."]}}}],"positions":{"1":["uninomial",10],"11":["author_word",19]}}}
|
|
164
|
+
× Agropogon|{"scientificName":{"parsed":true,"verbatim":"\u00d7 Agropogon","normalized":"\u00d7 Agropogon","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon"}}],"positions":{"2":["uninomial",11]}}}
|
|
165
|
+
x Agropogon|{"scientificName":{"parsed":true,"verbatim":"x Agropogon","normalized":"\u00d7 Agropogon","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon"}}],"positions":{"2":["uninomial",11]}}}
|
|
166
|
+
X Agropogon|{"scientificName":{"parsed":true,"verbatim":"X Agropogon","normalized":"\u00d7 Agropogon","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agropogon"}}],"positions":{"2":["uninomial",11]}}}
|
|
167
|
+
X Cupressocyparis leylandii|{"scientificName":{"parsed":true,"verbatim":"X Cupressocyparis leylandii","normalized":"\u00d7 Cupressocyparis leylandii","canonical":"Cupressocyparis leylandii","hybrid":true,"details":[{"genus":{"epitheton":"Cupressocyparis"},"species":{"epitheton":"leylandii"}}],"positions":{"2":["genus",17],"18":["species",27]}}}
|
|
168
|
+
×Heucherella tiarelloides|{"scientificName":{"parsed":true,"verbatim":"\u00d7Heucherella tiarelloides","normalized":"\u00d7 Heucherella tiarelloides","canonical":"Heucherella tiarelloides","hybrid":true,"details":[{"genus":{"epitheton":"Heucherella"},"species":{"epitheton":"tiarelloides"}}],"positions":{"1":["genus",12],"13":["species",25]}}}
|
|
169
|
+
xHeucherella tiarelloides|{"scientificName":{"parsed":true,"verbatim":"xHeucherella tiarelloides","normalized":"\u00d7 Heucherella tiarelloides","canonical":"Heucherella tiarelloides","hybrid":true,"details":[{"genus":{"epitheton":"Heucherella"},"species":{"epitheton":"tiarelloides"}}],"positions":{"1":["genus",12],"13":["species",25]}}}
|
|
170
|
+
x Heucherella tiarelloides|{"scientificName":{"parsed":true,"verbatim":"x Heucherella tiarelloides","normalized":"\u00d7 Heucherella tiarelloides","canonical":"Heucherella tiarelloides","hybrid":true,"details":[{"genus":{"epitheton":"Heucherella"},"species":{"epitheton":"tiarelloides"}}],"positions":{"2":["genus",13],"14":["species",26]}}}
|
|
171
|
+
×Agropogon littoralis (Sm.) C. E. Hubb. 1946|{"scientificName":{"parsed":true,"verbatim":"\u00d7Agropogon littoralis (Sm.) C. E. Hubb. 1946","normalized":"\u00d7 Agropogon littoralis (Sm.) C. E. Hubb. 1946","canonical":"Agropogon littoralis","hybrid":true,"details":[{"genus":{"epitheton":"Agropogon"},"species":{"epitheton":"littoralis","authorship":"(Sm.) C. E. Hubb. 1946","combinationAuthorTeam":{"authorTeam":"C. E. Hubb.","author":["C. E. Hubb."],"year":"1946"},"basionymAuthorTeam":{"authorTeam":"Sm.","author":["Sm."]}}}],"positions":{"1":["genus",10],"11":["species",21],"23":["author_word",26],"28":["author_word",30],"31":["author_word",33],"34":["author_word",39],"40":["year",44]}}}
|
|
172
|
+
Asplenium X inexpectatum (E.L. Braun 1940) Morton (1956)|{"scientificName":{"parsed":true,"verbatim":"Asplenium X inexpectatum (E.L. Braun 1940) Morton (1956)","normalized":"Asplenium \u00d7 inexpectatum (E.L. Braun 1940) Morton 1956","canonical":"Asplenium inexpectatum","hybrid":true,"details":[{"genus":{"epitheton":"Asplenium"},"species":{"epitheton":"inexpectatum","authorship":"(E.L. Braun 1940) Morton (1956)","combinationAuthorTeam":{"authorTeam":"Morton","author":["Morton"],"year":"1956"},"basionymAuthorTeam":{"authorTeam":"E.L. Braun","author":["E.L. Braun"],"year":"1940"}}}],"positions":{"0":["genus",9],"12":["species",24],"26":["author_word",30],"31":["author_word",36],"37":["year",41],"43":["author_word",49],"51":["year",55]}}}
|
|
173
|
+
Mentha ×smithiana R. A. Graham 1949|{"scientificName":{"parsed":true,"verbatim":"Mentha \u00d7smithiana R. A. Graham 1949","normalized":"Mentha \u00d7 smithiana R. A. Graham 1949","canonical":"Mentha smithiana","hybrid":true,"details":[{"genus":{"epitheton":"Mentha"},"species":{"epitheton":"smithiana","authorship":"R. A. Graham 1949","basionymAuthorTeam":{"authorTeam":"R. A. Graham","author":["R. A. Graham"],"year":"1949"}}}],"positions":{"0":["genus",6],"8":["species",17],"18":["author_word",20],"21":["author_word",23],"24":["author_word",30],"31":["year",35]}}}
|
|
174
|
+
Salix ×capreola Andersson (1867)|{"scientificName":{"parsed":true,"verbatim":"Salix \u00d7capreola Andersson (1867)","normalized":"Salix \u00d7 capreola Andersson 1867","canonical":"Salix capreola","hybrid":true,"details":[{"genus":{"epitheton":"Salix"},"species":{"epitheton":"capreola","authorship":"Andersson (1867)","basionymAuthorTeam":{"authorTeam":"Andersson","author":["Andersson"],"year":"1867"}}}],"positions":{"0":["genus",5],"7":["species",15],"16":["author_word",25],"27":["year",31]}}}
|
|
175
|
+
Salix x capreola Andersson|{"scientificName":{"parsed":true,"verbatim":"Salix x capreola Andersson","normalized":"Salix \u00d7 capreola Andersson","canonical":"Salix capreola","hybrid":true,"details":[{"genus":{"epitheton":"Salix"},"species":{"epitheton":"capreola","authorship":"Andersson","basionymAuthorTeam":{"authorTeam":"Andersson","author":["Andersson"]}}}],"positions":{"0":["genus",5],"8":["species",16],"17":["author_word",26]}}}
|
|
176
|
+
|
|
177
|
+
#hybrid formula
|
|
178
|
+
Arthopyrenia hyalospora X Hydnellum scrobiculatum|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora X Hydnellum scrobiculatum","normalized":"Arthopyrenia hyalospora \u00d7 Hydnellum scrobiculatum","canonical":"Arthopyrenia hyalospora Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora"}},{"genus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum"}}],"positions":{"0":["genus",12],"13":["species",23],"26":["genus",35],"36":["species",49]}}}
|
|
179
|
+
Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz","normalized":"Arthopyrenia hyalospora (Banker) D. Hall \u00d7 Hydnellum scrobiculatum D.E. Stuntz","canonical":"Arthopyrenia hyalospora Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora","authorship":"(Banker) D. Hall","combinationAuthorTeam":{"authorTeam":"D. Hall ","author":["D. Hall"]},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}},{"genus":{"epitheton":"Hydnellum"},"species":{"epitheton":"scrobiculatum","authorship":"D.E. Stuntz","basionymAuthorTeam":{"authorTeam":"D.E. Stuntz","author":["D.E. Stuntz"]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",31],"33":["author_word",35],"36":["author_word",40],"43":["genus",52],"53":["species",66],"67":["author_word",71],"72":["author_word",78]}}}
|
|
180
|
+
Arthopyrenia hyalospora x|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora x","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
|
|
181
|
+
Arthopyrenia hyalospora × ?|{"scientificName":{"parsed":true,"verbatim":"Arthopyrenia hyalospora \u00d7 ?","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"epitheton":"Arthopyrenia"},"species":{"epitheton":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
|
|
182
|
+
Agrostis L. × Polypogon Desf.|{"scientificName":{"parsed":true,"verbatim":"Agrostis L. \u00d7 Polypogon Desf.","normalized":"Agrostis L. \u00d7 Polypogon Desf.","canonical":"Agrostis Polypogon","hybrid":true,"details":[{"uninomial":{"epitheton":"Agrostis","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"uninomial":{"epitheton":"Polypogon","authorship":"Desf.","basionymAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]}}}],"positions":{"0":["uninomial",8],"9":["author_word",11],"14":["uninomial",23],"24":["author_word",29]}}}
|
|
183
|
+
Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":{"parsed":true,"verbatim":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","normalized":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","canonical":"Agrostis stolonifera Polypogon monspeliensis","hybrid":true,"details":[{"genus":{"epitheton":"Agrostis"},"species":{"epitheton":"stolonifera","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"genus":{"epitheton":"Polypogon"},"species":{"epitheton":"monspeliensis","authorship":"(L.) Desf.","combinationAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"26":["genus",35],"36":["species",49],"51":["author_word",53],"55":["author_word",60]}}}
|
|
184
|
+
#TODO Asplenium rhizophyllum X A. ruta-muraria E.L. Braun 1939|''
|
|
185
|
+
#TODO Asplenium rhizophyllum DC. x ruta-muraria E.L. Braun 1939|''
|
|
186
|
+
#TODO Asplenium rhizophyllum x ruta-muraria|''
|
|
187
|
+
#TODO Salix aurita L. × S. caprea L.|''
|
|
188
|
+
#TODO Mentha aquatica L. × M. arvensis L. × M. spicata L.|''
|
|
189
|
+
#TODO Polypodium vulgare subsp. prionodes (Asch.) Rothm. × subsp. vulgare|''
|
|
190
|
+
#TODO Tilletia caries (Bjerk.) Tul. × T. foetida (Wallr.) Liro.|''
|
|
191
|
+
Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true,"verbatim":"Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay","normalized":"Polypodium \u00d7 vulgare nothosubsp. mantoniae (Rothm.) Schidlay","canonical":"Polypodium vulgare mantoniae","hybrid":true,"details":[{"genus":{"epitheton":"Polypodium"},"species":{"epitheton":"vulgare"},"infraspecies":[{"epitheton":"mantoniae","rank":"nothosubsp.","authorship":"(Rothm.) Schidlay","combinationAuthorTeam":{"authorTeam":"Schidlay","author":["Schidlay"]},"basionymAuthorTeam":{"authorTeam":"Rothm.","author":["Rothm."]}}]}],"positions":{"0":["genus",10],"14":["species",21],"34":["infraspecies",43],"45":["author_word",51],"53":["author_word",61]}}}
|
|
192
|
+
#concepts
|
|
193
|
+
Senecio jacquinianus sec. Rchb.|{"scientificName":{"parsed":true,"verbatim":"Senecio jacquinianus sec. Rchb.","normalized":"Senecio jacquinianus sec. Rchb.","canonical":"Senecio jacquinianus","hybrid":false,"details":[{"genus":{"epitheton":"Senecio"},"species":{"epitheton":"jacquinianus"},"taxon_concept":{"authorship":"Rchb.","basionymAuthorTeam":{"authorTeam":"Rchb.","author":["Rchb."]}}}],"positions":{"0":["genus",7],"8":["species",20],"26":["author_word",31]}}}
|
|
194
|
+
#TODO Senecio legionensis sensu Samp., non Lange|{}
|
|
195
|
+
#TODO Pseudomonas methanica (Söhngen 1906) sensu. Dworkin and Foster 1956|{}
|
|
196
|
+
|
|
197
|
+
#empty spaces
|
|
198
|
+
Asplenium Xinexpectatum ( E.L. Braun 1940 ) Morton(1956) |{"scientificName":{"parsed":true,"verbatim":" Asplenium Xinexpectatum ( E.L. Braun 1940 ) Morton(1956) ","normalized":"Asplenium \u00d7 inexpectatum (E.L. Braun 1940) Morton 1956","canonical":"Asplenium inexpectatum","hybrid":true,"details":[{"genus":{"epitheton":"Asplenium"},"species":{"epitheton":"inexpectatum","authorship":"( E.L. Braun 1940 ) Morton(1956)","combinationAuthorTeam":{"authorTeam":"Morton","author":["Morton"],"year":"1956"},"basionymAuthorTeam":{"authorTeam":"E.L. Braun","author":["E.L. Braun"],"year":"1940"}}}],"positions":{"3":["genus",12],"22":["species",34],"37":["author_word",41],"47":["author_word",52],"55":["year",59],"66":["author_word",72],"73":["year",77]}}}
|
|
199
|
+
|
|
200
|
+
|
|
201
|
+
####
|
|
202
|
+
#
|
|
203
|
+
# Names with problems
|
|
204
|
+
#
|
|
205
|
+
####
|
|
206
|
+
|
|
207
|
+
#double parenthesis
|
|
208
|
+
Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true,"verbatim":"Eichornia crassipes ( (Martius) ) Solms-Laub.","normalized":"Eichornia crassipes (Martius) Solms-Laub.","canonical":"Eichornia crassipes","hybrid":false,"details":[{"genus":{"epitheton":"Eichornia"},"species":{"epitheton":"crassipes","authorship":"( (Martius) ) Solms-Laub.","combinationAuthorTeam":{"authorTeam":"Solms-Laub.","author":["Solms-Laub."]},"basionymAuthorTeam":{"authorTeam":"Martius","author":["Martius"]}}}],"positions":{"0":["genus",9],"10":["species",19],"23":["author_word",30],"34":["author_word",45]}}}
|
|
209
|
+
|
|
210
|
+
#year without authorship
|
|
211
|
+
Acarospora cratericola 1929|{"scientificName":{"parsed":true,"verbatim":"Acarospora cratericola 1929","normalized":"Acarospora cratericola 1929","canonical":"Acarospora cratericola","hybrid":false,"details":[{"genus":{"epitheton":"Acarospora"},"species":{"epitheton":"cratericola","year":"1929"}}],"positions":{"0":["genus",10],"11":["species",22],"23":["year",27]}}}
|
|
212
|
+
|
|
213
|
+
|
|
214
|
+
#year range
|
|
215
|
+
Tridentella tangeroae Bruce, 1987-92|{"scientificName":{"parsed":true,"verbatim":"Tridentella tangeroae Bruce, 1987-92","normalized":"Tridentella tangeroae Bruce 1987-92","canonical":"Tridentella tangeroae","hybrid":false,"details":[{"genus":{"epitheton":"Tridentella"},"species":{"epitheton":"tangeroae","authorship":"Bruce, 1987-92","basionymAuthorTeam":{"authorTeam":"Bruce","author":["Bruce"],"year":"1987-92"}}}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",27],"29":["year",36]}}}
|
|
216
|
+
|
|
217
|
+
#year in square brackets
|
|
218
|
+
Anthoscopus Cabanis [1851]|{"scientificName":{"parsed":true,"verbatim":"Anthoscopus Cabanis [1851]","normalized":"Anthoscopus Cabanis (1851)","canonical":"Anthoscopus","hybrid":false,"details":[{"uninomial":{"epitheton":"Anthoscopus","authorship":"Cabanis [1851]","basionymAuthorTeam":{"authorTeam":"Cabanis","author":["Cabanis"],"approximate_year":"(1851)"}}}],"positions":{"0":["uninomial",11],"12":["author_word",19],"21":["year",25]}}}
|
|
219
|
+
Anthoscopus Cabanis [185?]|{"scientificName":{"parsed":true,"verbatim":"Anthoscopus Cabanis [185?]","normalized":"Anthoscopus Cabanis (185?)","canonical":"Anthoscopus","hybrid":false,"details":[{"uninomial":{"epitheton":"Anthoscopus","authorship":"Cabanis [185?]","basionymAuthorTeam":{"authorTeam":"Cabanis","author":["Cabanis"],"approximate_year":"(185?)"}}}],"positions":{"0":["uninomial",11],"12":["author_word",19],"21":["year",25]}}}
|
|
220
|
+
Anthoscopus Cabanis [1851?]|{"scientificName":{"parsed":true,"verbatim":"Anthoscopus Cabanis [1851?]","normalized":"Anthoscopus Cabanis (1851?)","canonical":"Anthoscopus","hybrid":false,"details":[{"uninomial":{"epitheton":"Anthoscopus","authorship":"Cabanis [1851?]","basionymAuthorTeam":{"authorTeam":"Cabanis","author":["Cabanis"],"approximate_year":"(1851?)"}}}],"positions":{"0":["uninomial",11],"12":["author_word",19],"21":["year",26]}}}
|
|
221
|
+
Anthoscopus Cabanis [1851]|{"scientificName":{"parsed":true,"verbatim":"Anthoscopus Cabanis [1851]","normalized":"Anthoscopus Cabanis (1851)","canonical":"Anthoscopus","hybrid":false,"details":[{"uninomial":{"epitheton":"Anthoscopus","authorship":"Cabanis [1851]","basionymAuthorTeam":{"authorTeam":"Cabanis","author":["Cabanis"],"approximate_year":"(1851)"}}}],"positions":{"0":["uninomial",11],"12":["author_word",19],"21":["year",25]}}}
|
|
222
|
+
Anthoscopus Cabanis [1851?]|{"scientificName":{"parsed":true,"verbatim":"Anthoscopus Cabanis [1851?]","normalized":"Anthoscopus Cabanis (1851?)","canonical":"Anthoscopus","hybrid":false,"details":[{"uninomial":{"epitheton":"Anthoscopus","authorship":"Cabanis [1851?]","basionymAuthorTeam":{"authorTeam":"Cabanis","author":["Cabanis"],"approximate_year":"(1851?)"}}}],"positions":{"0":["uninomial",11],"12":["author_word",19],"21":["year",26]}}}
|
|
223
|
+
Trismegistia monodii Ando, 1973 [1974]|{"scientificName":{"parsed":true,"verbatim":"Trismegistia monodii Ando, 1973 [1974]","normalized":"Trismegistia monodii Ando 1973 (1974)","canonical":"Trismegistia monodii","hybrid":false,"details":[{"genus":{"epitheton":"Trismegistia"},"species":{"epitheton":"monodii","authorship":"Ando, 1973 [1974]","basionymAuthorTeam":{"authorTeam":"Ando","author":["Ando"],"year":"1973","approximate_year":"(1974)"}}}],"positions":{"0":["genus",12],"13":["species",20],"21":["author_word",25],"27":["year",31],"33":["year",37]}}}
|
|
224
|
+
Zygaena witti Wiegel [1973]|{"scientificName":{"parsed":true,"verbatim":"Zygaena witti Wiegel [1973]","normalized":"Zygaena witti Wiegel (1973)","canonical":"Zygaena witti","hybrid":false,"details":[{"genus":{"epitheton":"Zygaena"},"species":{"epitheton":"witti","authorship":"Wiegel [1973]","basionymAuthorTeam":{"authorTeam":"Wiegel","author":["Wiegel"],"approximate_year":"(1973)"}}}],"positions":{"0":["genus",7],"8":["species",13],"14":["author_word",20],"22":["year",26]}}}
|
|
225
|
+
Deyeuxia coarctata Kunth, 1815 [1816]|{"scientificName":{"parsed":true,"verbatim":"Deyeuxia coarctata Kunth, 1815 [1816]","normalized":"Deyeuxia coarctata Kunth 1815 (1816)","canonical":"Deyeuxia coarctata","hybrid":false,"details":[{"genus":{"epitheton":"Deyeuxia"},"species":{"epitheton":"coarctata","authorship":"Kunth, 1815 [1816]","basionymAuthorTeam":{"authorTeam":"Kunth","author":["Kunth"],"year":"1815","approximate_year":"(1816)"}}}],"positions":{"0":["genus",8],"9":["species",18],"19":["author_word",24],"26":["year",30],"32":["year",36]}}}
|
|
226
|
+
|
|
227
|
+
#names with garbage at the end
|
|
228
|
+
Morea (Morea) Burt 2342343242 23424322342 23424234|{"scientificName":{"parsed":true,"verbatim":"Morea (Morea) Burt 2342343242 23424322342 23424234","normalized":"Morea (Morea) Burt","canonical":"Morea","hybrid":false,"details":[{"uninomial":{"epitheton":"Morea","authorship":"(Morea) Burt","combinationAuthorTeam":{"authorTeam":"Burt","author":["Burt"]},"basionymAuthorTeam":{"authorTeam":"Morea","author":["Morea"]}}}],"positions":{"0":["uninomial",5],"7":["author_word",12],"14":["author_word",18]}}}
|
|
229
|
+
|
|
230
|
+
|
|
231
|
+
#salvage canonical
|
|
232
|
+
Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true,"verbatim":"Morea ssjjlajajaj324$33 234243242","normalized":"Morea","canonical":"Morea","hybrid":false,"details":[{"uninomial":{"epitheton":"Morea"}}],"positions":{"0":["uninomial",5]}}}
|
|
233
|
+
Morea (Morea) burtius 2342343242 23424322342 23424234|{"scientificName":{"parsed":true,"verbatim":"Morea (Morea) burtius 2342343242 23424322342 23424234","normalized":"Morea (Morea) burtius","canonical":"Morea burtius","hybrid":false,"details":[{"genus":{"epitheton":"Morea"},"subgenus":{"epitheton":"Morea"},"species":{"epitheton":"burtius"}}],"positions":{"0":["genus",5],"7":["subgenus",12],"14":["species",21]}}}
|
|
234
|
+
Verpericola megasoma ""Dall" Pils.|{"scientificName":{"parsed":true,"verbatim":"Verpericola megasoma \"\"Dall\" Pils.","normalized":"Verpericola megasoma","canonical":"Verpericola megasoma","hybrid":false,"details":[{"genus":{"epitheton":"Verpericola"},"species":{"epitheton":"megasoma"}}],"positions":{"0":["genus",11],"12":["species",20]}}}
|
|
235
|
+
Moraea spathulata ( (L. f. Klatt|{"scientificName":{"parsed":true,"verbatim":"Moraea spathulata ( (L. f. Klatt","normalized":"Moraea spathulata","canonical":"Moraea spathulata","hybrid":false,"details":[{"genus":{"epitheton":"Moraea"},"species":{"epitheton":"spathulata"}}],"positions":{"0":["genus",6],"7":["species",17]}}}
|
data/spec/spec_helper.rb
ADDED
|
File without changes
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: dimus-biodiversity
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.5.
|
|
4
|
+
version: 0.5.10
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Dmitry Mozzherin
|
|
@@ -9,8 +9,8 @@ autorequire:
|
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
11
|
|
|
12
|
-
date: 2009-
|
|
13
|
-
default_executable:
|
|
12
|
+
date: 2009-08-12 00:00:00 -07:00
|
|
13
|
+
default_executable: nnparse
|
|
14
14
|
dependencies:
|
|
15
15
|
- !ruby/object:Gem::Dependency
|
|
16
16
|
name: treetop
|
|
@@ -20,48 +20,62 @@ dependencies:
|
|
|
20
20
|
requirements:
|
|
21
21
|
- - ">="
|
|
22
22
|
- !ruby/object:Gem::Version
|
|
23
|
-
version:
|
|
23
|
+
version: "0"
|
|
24
24
|
version:
|
|
25
|
-
|
|
26
|
-
|
|
25
|
+
- !ruby/object:Gem::Dependency
|
|
26
|
+
name: rspec
|
|
27
|
+
type: :development
|
|
28
|
+
version_requirement:
|
|
29
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
30
|
+
requirements:
|
|
31
|
+
- - ">="
|
|
32
|
+
- !ruby/object:Gem::Version
|
|
33
|
+
version: "0"
|
|
34
|
+
version:
|
|
35
|
+
description: Tools for biodiversity informatics
|
|
36
|
+
email: dmozzherin@gmail.com
|
|
27
37
|
executables:
|
|
28
|
-
-
|
|
38
|
+
- nnparse
|
|
29
39
|
extensions: []
|
|
30
40
|
|
|
31
|
-
extra_rdoc_files:
|
|
32
|
-
|
|
41
|
+
extra_rdoc_files:
|
|
42
|
+
- LICENSE
|
|
43
|
+
- README.rdoc
|
|
33
44
|
files:
|
|
45
|
+
- .document
|
|
46
|
+
- .gitignore
|
|
34
47
|
- LICENSE
|
|
35
48
|
- README.rdoc
|
|
36
49
|
- Rakefile
|
|
37
|
-
-
|
|
50
|
+
- VERSION
|
|
51
|
+
- bin/nnparse
|
|
38
52
|
- conf/environment.rb
|
|
39
|
-
-
|
|
40
|
-
- spec/parser/scientific_name.spec.rb
|
|
41
|
-
- spec/parser/scientific_name_canonical.spec.rb
|
|
42
|
-
- spec/parser/scientific_name_clean.spec.rb
|
|
43
|
-
- spec/parser/scientific_name_dirty.spec.rb
|
|
44
|
-
- spec/guid
|
|
45
|
-
- spec/guid/lsid.spec.rb
|
|
46
|
-
- lib/biodiversity
|
|
47
|
-
- lib/biodiversity/parser
|
|
53
|
+
- lib/biodiversity.rb
|
|
48
54
|
- lib/biodiversity/guid.rb
|
|
49
|
-
- lib/biodiversity/guid
|
|
50
55
|
- lib/biodiversity/guid/lsid.rb
|
|
51
|
-
- lib/biodiversity/parser
|
|
56
|
+
- lib/biodiversity/parser.rb
|
|
52
57
|
- lib/biodiversity/parser/scientific_name_canonical.rb
|
|
53
|
-
- lib/biodiversity/parser/scientific_name_dirty.rb
|
|
54
58
|
- lib/biodiversity/parser/scientific_name_canonical.treetop
|
|
59
|
+
- lib/biodiversity/parser/scientific_name_clean.rb
|
|
55
60
|
- lib/biodiversity/parser/scientific_name_clean.treetop
|
|
61
|
+
- lib/biodiversity/parser/scientific_name_dirty.rb
|
|
56
62
|
- lib/biodiversity/parser/scientific_name_dirty.treetop
|
|
57
|
-
-
|
|
58
|
-
-
|
|
59
|
-
-
|
|
63
|
+
- pkg/.gitignore
|
|
64
|
+
- spec/biodiversity_spec.rb
|
|
65
|
+
- spec/guid/lsid.spec.rb
|
|
66
|
+
- spec/parser/scientific_name.spec.rb
|
|
67
|
+
- spec/parser/scientific_name_canonical.spec.rb
|
|
68
|
+
- spec/parser/scientific_name_clean.spec.rb
|
|
69
|
+
- spec/parser/scientific_name_dirty.spec.rb
|
|
70
|
+
- spec/parser/spec_helper.rb
|
|
71
|
+
- spec/parser/test_data.txt
|
|
72
|
+
- spec/spec_helper.rb
|
|
60
73
|
has_rdoc: false
|
|
61
|
-
homepage: http://github.com/dimus/biodiversity
|
|
74
|
+
homepage: http://github.com/dimus/biodiversity
|
|
75
|
+
licenses:
|
|
62
76
|
post_install_message:
|
|
63
|
-
rdoc_options:
|
|
64
|
-
|
|
77
|
+
rdoc_options:
|
|
78
|
+
- --charset=UTF-8
|
|
65
79
|
require_paths:
|
|
66
80
|
- lib
|
|
67
81
|
required_ruby_version: !ruby/object:Gem::Requirement
|
|
@@ -79,9 +93,16 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
79
93
|
requirements: []
|
|
80
94
|
|
|
81
95
|
rubyforge_project:
|
|
82
|
-
rubygems_version: 1.
|
|
96
|
+
rubygems_version: 1.3.5
|
|
83
97
|
signing_key:
|
|
84
98
|
specification_version: 2
|
|
85
|
-
summary:
|
|
86
|
-
test_files:
|
|
87
|
-
|
|
99
|
+
summary: Parser of scientific names
|
|
100
|
+
test_files:
|
|
101
|
+
- spec/biodiversity_spec.rb
|
|
102
|
+
- spec/guid/lsid.spec.rb
|
|
103
|
+
- spec/parser/scientific_name.spec.rb
|
|
104
|
+
- spec/parser/scientific_name_canonical.spec.rb
|
|
105
|
+
- spec/parser/scientific_name_clean.spec.rb
|
|
106
|
+
- spec/parser/scientific_name_dirty.spec.rb
|
|
107
|
+
- spec/parser/spec_helper.rb
|
|
108
|
+
- spec/spec_helper.rb
|