decisiontree 0.1.0

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data/CHANGELOG.txt ADDED
@@ -0,0 +1,3 @@
1
+ 0.1.0 - Apr. 04/07
2
+ * ID3 algorithms for continuous and discrete cases
3
+ * Graphviz component to visualize the learned tree
data/History.txt ADDED
File without changes
data/Manifest.txt ADDED
@@ -0,0 +1,18 @@
1
+ CHANGELOG.txt
2
+ History.txt
3
+ Manifest.txt
4
+ README.txt
5
+ Rakefile
6
+
7
+ lib/decisiontree.rb
8
+ lib/decisiontree/version.rb
9
+ lib/decisiontree/id3_tree.rb
10
+ examples/continuous-id3.rb
11
+ examples/discrete-id3.rb
12
+ examples/data/continuous-test.txt
13
+ examples/data/discrete-test.txt
14
+ examples/data/continuous-training.txt
15
+ examples/data/discrete-training.txt
16
+ setup.rb
17
+ test/test_helper.rb
18
+ test/test_decisiontree.rb
data/README.txt ADDED
@@ -0,0 +1,15 @@
1
+ README for decision_tree
2
+ ========================
3
+
4
+ A ruby library which implements ID3 (information gain) algorithm for decision tree learning. Currently, continuous and discrete datasets can be learned.
5
+
6
+ - Discrete assumes unique labels, can be graphed and converted into a png for visual analysis
7
+ - Continuous looks at all possible values for a variable and iteratively chooses the best threshold between all possible assignments. This results in a binary tree which is partitioned by the threshold at every step. (e.g. temperate > 20C)
8
+
9
+ Currently, graphing works properly only for discrete cases due to a limitation in graphviz code.
10
+
11
+ Graphviz dependency: http://rockit.sourceforge.net/subprojects/graphr/
12
+
13
+ Enjoy.
14
+
15
+ Ilya Grigorik (ilya <at> fortehost DOT com)
data/Rakefile ADDED
@@ -0,0 +1,53 @@
1
+ require 'rubygems'
2
+ require 'rake'
3
+ require 'rake/clean'
4
+ require 'rake/testtask'
5
+ require 'rake/packagetask'
6
+ require 'rake/gempackagetask'
7
+ require 'rake/rdoctask'
8
+ require 'rake/contrib/rubyforgepublisher'
9
+ require 'fileutils'
10
+ require 'hoe'
11
+ include FileUtils
12
+ require File.join(File.dirname(__FILE__), 'lib', 'decisiontree', 'version')
13
+
14
+ AUTHOR = "Ilya Grigorik"
15
+ EMAIL = "ilya <at> fortehost.com"
16
+ DESCRIPTION = "ID3-based implementation of the M.L. Decision Tree algorithm"
17
+ GEM_NAME = "decisiontree" # what ppl will type to install your gem
18
+ RUBYFORGE_PROJECT = "decisiontree" # The unix name for your project
19
+ HOMEPATH = "http://#{RUBYFORGE_PROJECT}.rubyforge.org"
20
+
21
+ NAME = "decisiontree"
22
+ REV = nil # UNCOMMENT IF REQUIRED: File.read(".svn/entries")[/committed-rev="(d+)"/, 1] rescue nil
23
+ VERS = ENV['VERSION'] || (DecisionTree::VERSION::STRING + (REV ? ".#{REV}" : ""))
24
+ CLEAN.include ['**/.*.sw?', '*.gem', '.config']
25
+ RDOC_OPTS = ['--quiet', '--title', "decisiontree documentation",
26
+ "--opname", "index.html",
27
+ "--line-numbers",
28
+ "--main", "README",
29
+ "--inline-source"]
30
+
31
+ class Hoe
32
+ def extra_deps
33
+ @extra_deps.reject { |x| Array(x).first == 'hoe' }
34
+ end
35
+ end
36
+
37
+ # Generate all the Rake tasks
38
+ # Run 'rake -T' to see list of generated tasks (from gem root directory)
39
+ hoe = Hoe.new(GEM_NAME, VERS) do |p|
40
+ p.author = AUTHOR
41
+ p.description = DESCRIPTION
42
+ p.email = EMAIL
43
+ p.summary = DESCRIPTION
44
+ p.url = HOMEPATH
45
+ p.rubyforge_name = RUBYFORGE_PROJECT if RUBYFORGE_PROJECT
46
+ p.test_globs = ["test/**/*_test.rb"]
47
+ p.clean_globs = CLEAN #An array of file patterns to delete on clean.
48
+
49
+ # == Optional
50
+ #p.changes - A description of the release's latest changes.
51
+ #p.extra_deps - An array of rubygem dependencies.
52
+ #p.spec_extras - A hash of extra values to set in the gemspec.
53
+ end
@@ -0,0 +1,33 @@
1
+ require 'rubygems'
2
+ require 'decisiontree'
3
+ include DecisionTree
4
+
5
+ # ---Continuous-----------------------------------------------------------------------------------------
6
+
7
+ # Read in the training data
8
+ training, attributes = [], nil
9
+ File.open('data/continuous-training.txt','r').each_line { |line|
10
+ data = line.strip.chomp('.').split(',')
11
+ attributes ||= data
12
+ training.push(data.collect {|v| (v == 'healthy') || (v == 'colic') ? (v == 'healthy' ? 1 : 0) : v.to_f})
13
+ }
14
+
15
+ # Remove the attribute row from the training data
16
+ training.shift
17
+
18
+ # Instantiate the tree, and train it based on the data (set default to '1')
19
+ dec_tree = ID3Tree.new(attributes, training, 1, :continuous)
20
+ dec_tree.train
21
+
22
+ #---- Test the tree....
23
+
24
+ # Read in the test cases
25
+ # Note: omit the attribute line (first line), we know the labels from the training data
26
+ test = []
27
+ File.open('data/continuous-test.txt','r').each_line { |line|
28
+ data = line.strip.chomp('.').split(',')
29
+ test.push(data.collect {|v| (v == 'healthy') || (v == 'colic') ? (v == 'healthy' ? 1 : 0) : v.to_f})
30
+ }
31
+
32
+ # Let the tree predict the output and compare it to the true specified value
33
+ test.each { |t| predict = dec_tree.predict(t); puts "Predict: #{predict} ... True: #{t.last}"}
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+ 6.00000,140.00000,97.00000,32.20000,48.15000,16.80000,153.64301,17.00000,52.60000,48.00000,40.00000,67.00000,80.00000,2.18364,1.50000,1.45576,colic.
63
+ 3.10000,138.00000,95.00000,29.30000,10.98000,16.80000,822.96600,3.90000,0.60000,58.00000,36.00000,36.00000,48.00000,2.52015,0.50000,5.04030,colic.
64
+ 3.70000,144.00000,107.00000,25.40000,85.30000,15.30000,457.36600,3.10000,1.10000,66.00000,24.00000,48.00000,60.00000,2.81775,0.50000,5.63550,colic.
65
+ 4.20000,139.00000,100.00000,29.40000,2.33000,13.80000,233.71001,3.40000,0.90000,64.00000,12.00000,40.00000,44.00000,3.78293,0.20000,18.91465,healthy.
66
+ 4.20000,144.00000,107.00000,23.90000,7.87000,17.30000,300.61499,5.90000,16.40000,68.00000,20.00000,48.00000,48.00000,4.42355,0.20000,22.11775,healthy.
67
+ 4.10000,139.00000,100.00000,28.60000,4.12000,14.50000,170.78101,0.70000,0.01000,60.00000,10.00000,43.00000,32.00000,3.22927,0.20000,16.14635,healthy.
68
+ 4.70000,136.00000,99.00000,28.60000,10.43000,13.10000,288.27600,1.70000,0.20000,62.00000,8.00000,35.00000,40.00000,4.18454,0.20000,20.92270,healthy.
69
+ 3.70000,140.00000,102.00000,28.20000,6.57000,13.50000,174.25400,3.20000,2.10000,60.00000,10.00000,39.00000,44.00000,3.40799,0.20000,17.03995,healthy.
70
+ 3.70000,142.00000,101.00000,30.60000,94.68000,14.10000,300.61499,1.90000,0.10000,58.00000,32.00000,40.00000,80.00000,2.66538,0.20000,13.32690,colic.
71
+ 3.00000,135.00000,95.00000,27.30000,8.19000,15.70000,265.06000,2.30000,0.01000,60.00000,40.00000,37.00000,48.00000,2.96841,0.20000,14.84205,colic.
72
+ 2.70000,143.00000,96.00000,24.60000,83.61000,25.10000,386.71301,6.50000,3.80000,62.00000,28.00000,33.00000,52.00000,3.44921,0.50000,6.89842,colic.
73
+ 4.00000,140.00000,103.00000,20.30000,99.16000,20.70000,300.61499,3.50000,1.70000,64.00000,24.00000,44.00000,64.00000,3.75317,0.20000,18.76585,colic.
74
+ 3.50000,130.00000,93.00000,29.90000,4.35000,10.60000,265.06000,1.90000,0.70000,70.00000,20.00000,42.00000,52.00000,5.66107,0.50000,11.32214,colic.
75
+ 3.10000,139.00000,96.00000,30.80000,20.02000,15.30000,167.07899,3.30000,1.80000,58.00000,20.00000,44.00000,72.00000,3.30615,0.20000,16.53075,colic.
76
+ 3.00000,137.00000,91.00000,14.80000,7.32000,34.20000,181.70300,20.10000,1.70000,61.00000,16.00000,59.00000,72.00000,4.94729,0.50000,9.89458,colic.
77
+ 3.70000,138.00000,99.00000,29.10000,97.72000,13.60000,214.92700,1.50000,0.01000,58.00000,20.00000,35.00000,56.00000,2.61113,0.20000,13.05565,colic.
78
+ 4.00000,137.00000,98.00000,27.50000,56.43000,15.50000,243.71800,3.70000,0.90000,62.00000,16.00000,38.00000,60.00000,4.75695,0.50000,9.51390,colic.
79
+ 3.20000,139.00000,98.00000,30.00000,76.75000,14.20000,276.43900,2.40000,0.01000,61.00000,60.00000,47.00000,72.00000,2.74397,0.20000,13.71985,colic.
80
+ 4.50000,141.00000,103.00000,27.40000,9.08000,15.10000,457.36600,4.60000,5.50000,70.00000,8.00000,39.00000,32.00000,3.92956,0.20000,19.64780,healthy.
81
+ 3.90000,134.00000,98.00000,25.10000,5.35000,14.80000,695.82800,1.90000,0.01000,72.00000,16.00000,33.00000,48.00000,8.01149,0.70000,11.44499,healthy.
82
+ 3.90000,138.00000,102.00000,25.90000,4.05000,14.00000,564.12097,5.70000,5.50000,70.00000,10.00000,41.00000,40.00000,5.33758,0.20000,26.68790,healthy.
83
+ 3.90000,141.00000,103.00000,25.20000,7.55000,16.70000,153.64301,2.90000,7.90000,70.00000,16.00000,34.00000,48.00000,3.46906,0.50000,6.93812,healthy.
84
+ 4.60000,137.00000,101.00000,24.70000,3.18000,15.90000,206.06100,1.40000,1.10000,70.00000,10.00000,38.00000,40.00000,5.13267,0.20000,25.66335,healthy.
85
+ 3.50000,131.00000,92.00000,30.70000,14.41000,11.80000,420.53101,3.30000,1.10000,64.00000,16.00000,41.00000,48.00000,2.23278,0.20000,11.16390,colic.
86
+ 3.80000,141.00000,100.00000,29.20000,82.01000,15.60000,233.71001,2.20000,0.70000,62.00000,14.00000,33.00000,52.00000,4.07480,0.50000,8.14960,colic.
87
+ 4.40000,140.00000,98.00000,24.10000,82.76000,22.30000,403.25699,2.80000,2.00000,60.00000,32.00000,62.00000,112.00000,2.15636,0.50000,4.31272,colic.
88
+ 3.60000,144.00000,97.00000,19.90000,38.61000,30.70000,822.96600,10.60000,6.20000,80.00000,24.00000,62.00000,64.00000,3.64002,1.00000,3.64002,colic.
89
+ 3.30000,144.00000,101.00000,28.90000,61.44000,17.40000,476.97101,28.90000,138.60001,89.00000,16.00000,54.00000,80.00000,5.20165,1.00000,5.20165,colic.
90
+ 3.80000,136.00000,98.00000,23.90000,87.61000,17.90000,318.07199,6.10000,7.70000,100.00000,28.00000,54.00000,92.00000,3.27562,1.00000,3.27562,colic.
91
+ 4.00000,139.00000,99.00000,26.00000,46.76000,18.00000,476.97101,5.30000,6.50000,73.00000,36.00000,37.00000,82.00000,3.37621,0.50000,6.75242,colic.
92
+ 3.00000,141.00000,99.00000,32.10000,97.13000,12.90000,420.53101,2.90000,1.80000,73.00000,12.00000,28.00000,80.00000,3.37575,0.70000,4.82250,colic.
93
+ 3.50000,145.00000,93.00000,20.00000,86.12000,35.50000,895.03497,5.70000,5.60000,80.00000,34.00000,65.00000,88.00000,2.57734,0.50000,5.15468,colic.
94
+ 4.00000,137.00000,99.00000,29.70000,4.71000,12.30000,403.25699,2.40000,1.20000,56.00000,12.00000,37.00000,44.00000,3.37110,0.20000,16.85550,healthy.
95
+ 4.20000,140.00000,103.00000,25.60000,4.80000,15.60000,386.71301,2.60000,3.50000,54.00000,12.00000,33.00000,40.00000,2.99693,0.20000,14.98465,healthy.
96
+ 4.70000,139.00000,101.00000,27.40000,6.95000,15.30000,197.60699,1.30000,0.30000,58.00000,12.00000,37.00000,44.00000,2.50155,0.50000,5.00310,healthy.
97
+ 5.20000,138.00000,99.00000,28.00000,4.46000,16.20000,340.96799,3.10000,2.70000,55.00000,12.00000,35.00000,56.00000,4.22825,0.20000,21.14125,healthy.
98
+ 4.50000,137.00000,98.00000,26.40000,2.49000,17.10000,197.60699,14.10000,9.00000,54.00000,12.00000,42.00000,56.00000,3.47526,0.20000,17.37630,healthy.
99
+ 4.40000,138.00000,101.00000,20.10000,65.74000,21.30000,476.97101,14.00000,88.60000,72.00000,14.00000,43.00000,82.00000,2.78303,0.50000,5.56606,colic.
100
+ 3.80000,143.00000,101.00000,29.20000,100.22000,16.60000,313.50201,4.30000,26.50000,67.00000,20.00000,63.00000,80.00000,3.35963,1.00000,3.35963,colic.
101
+ 3.50000,142.00000,101.00000,29.10000,73.95000,15.40000,386.71301,5.10000,4.30000,65.00000,28.00000,41.00000,56.00000,4.12300,0.20000,20.61500,colic.
102
+ 4.30000,141.00000,104.00000,23.10000,82.72000,18.20000,386.71301,4.90000,1.60000,72.00000,36.00000,45.00000,92.00000,3.47479,0.50000,6.94958,colic.
103
+ 3.60000,135.00000,98.00000,30.10000,83.79000,10.50000,254.18300,1.50000,0.01000,58.00000,20.00000,41.00000,48.00000,2.64120,0.50000,5.28240,colic.
104
+ 2.80000,140.00000,101.00000,26.90000,31.25000,14.90000,463.62701,4.30000,3.80000,46.00000,28.00000,48.00000,64.00000,4.19771,0.50000,8.39542,colic.
105
+ 3.30000,140.00000,99.00000,32.70000,97.22000,11.60000,300.61499,3.70000,3.40000,58.00000,24.00000,34.00000,44.00000,2.04600,0.70000,2.92286,colic.
106
+ 3.10000,146.00000,103.00000,21.60000,83.65000,24.50000,288.27600,4.30000,3.50000,82.00000,32.00000,46.00000,64.00000,3.65040,0.50000,7.30080,colic.
107
+ 4.10000,139.00000,102.00000,24.20000,88.23000,16.90000,214.92700,1.80000,0.01000,63.00000,12.00000,40.00000,42.00000,2.97430,0.20000,14.87150,colic.
108
+ 4.50000,139.00000,100.00000,29.20000,6.04000,14.30000,210.72301,2.00000,0.20000,68.00000,10.00000,40.00000,40.00000,3.52393,0.50000,7.04786,healthy.
109
+ 4.20000,130.00000,102.00000,27.90000,6.68000,4.30000,386.71301,1.90000,1.10000,56.00000,14.00000,37.00000,48.00000,4.05697,0.20000,20.28485,healthy.
110
+ 5.30000,137.00000,99.00000,25.80000,4.35000,17.50000,276.43900,1.90000,0.60000,62.00000,16.00000,40.00000,52.00000,5.01906,0.50000,10.03812,healthy.
111
+ 4.40000,135.00000,100.00000,25.10000,2.77000,14.30000,197.60699,0.60000,1.60000,60.00000,16.00000,36.00000,36.00000,3.56702,0.20000,17.83510,healthy.
112
+ 2.90000,129.00000,86.00000,27.30000,82.85000,18.60000,756.74597,5.40000,29.50000,79.00000,16.00000,43.00000,84.00000,2.38374,1.00000,2.38374,colic.
113
+ 3.40000,139.00000,98.00000,29.80000,54.42000,14.60000,695.82800,5.50000,30.00000,52.00000,24.00000,35.00000,52.00000,1.95393,0.50000,3.90786,colic.
114
+ 3.30000,137.00000,96.00000,30.50000,53.76000,13.80000,233.71001,7.20000,28.90000,55.00000,24.00000,30.00000,100.00000,2.11327,0.20000,10.56635,colic.
115
+ 2.50000,127.00000,88.00000,17.80000,88.37000,23.70000,588.29602,3.90000,3.20000,70.00000,24.00000,54.00000,88.00000,3.32398,2.00000,1.66199,colic.
116
+ 3.30000,146.00000,97.00000,23.10000,70.02000,29.20000,1420.03601,42.70000,327.50000,70.00000,28.00000,68.00000,68.00000,2.19294,3.00000,0.73098,colic.
117
+ 3.80000,140.00000,100.00000,26.70000,92.83000,17.10000,457.36600,4.60000,2.10000,61.00000,32.00000,38.00000,76.00000,2.07359,1.50000,1.38239,colic.
118
+ 3.30000,134.00000,95.00000,31.60000,73.63000,10.70000,224.11301,3.30000,1.70000,62.00000,20.00000,37.00000,56.00000,3.68947,0.50000,7.37894,colic.
119
+ 3.30000,140.00000,99.00000,29.60000,88.66000,14.70000,233.71001,1.60000,2.40000,74.00000,40.00000,38.00000,52.00000,2.76427,1.00000,2.76427,colic.
120
+ 2.80000,145.00000,101.00000,35.40000,31.96000,11.40000,243.71800,0.40000,0.70000,70.00000,20.00000,47.00000,84.00000,3.82587,0.20000,19.12935,colic.
121
+ 4.40000,136.00000,98.00000,28.50000,8.69000,13.90000,725.62500,1.90000,1.50000,60.00000,16.00000,40.00000,52.00000,3.41419,0.20000,17.07095,healthy.
122
+ 3.70000,140.00000,100.00000,29.80000,5.15000,13.90000,189.47200,2.30000,0.70000,78.00000,12.00000,42.00000,48.00000,3.33607,0.20000,16.68035,healthy.
123
+ 4.60000,138.00000,100.00000,28.60000,9.79000,14.00000,224.11301,1.60000,2.00000,61.00000,16.00000,35.00000,40.00000,3.58624,0.20000,17.93120,healthy.
124
+ 4.00000,138.00000,102.00000,25.90000,90.54000,14.10000,326.93799,0.40000,1.70000,70.00000,20.00000,48.00000,79.00000,3.34645,0.20000,16.73225,colic.
125
+ 2.70000,132.00000,93.00000,29.30000,52.57000,12.40000,1058.59497,5.00000,8.00000,78.00000,28.00000,48.00000,76.00000,4.77013,0.50000,9.54026,colic.
126
+ 3.40000,133.00000,95.00000,28.50000,64.71000,12.90000,276.43900,8.70000,43.70000,76.00000,16.00000,47.00000,76.00000,4.15168,0.20000,20.75840,colic.
127
+ 3.00000,139.00000,93.00000,33.30000,96.88000,15.70000,224.11301,6.90000,3.30000,48.00000,80.00000,43.00000,56.00000,2.32748,0.20000,11.63740,colic.
128
+ 2.80000,139.00000,101.00000,25.90000,71.32000,14.90000,676.35999,2.30000,0.30000,71.00000,16.00000,46.00000,52.00000,2.50558,0.20000,12.52790,colic.
129
+ 2.80000,142.00000,97.00000,29.80000,53.21000,18.00000,160.22400,4.70000,5.10000,50.00000,60.00000,44.00000,88.00000,2.31710,0.70000,3.31014,colic.
130
+ 3.50000,140.00000,102.00000,23.00000,87.86000,18.50000,189.47200,2.20000,0.90000,73.00000,24.00000,47.00000,96.00000,3.73721,0.50000,7.47442,colic.
131
+ 3.00000,142.00000,100.00000,22.60000,93.17000,22.40000,355.59201,16.30000,124.10000,80.00000,24.00000,45.00000,68.00000,2.75668,0.70000,3.93811,colic.
132
+ 3.30000,149.00000,110.00000,19.20000,96.46000,23.10000,667.21997,5.70000,0.20000,59.00000,16.00000,41.00000,54.00000,3.18324,0.20000,15.91620,colic.
133
+ 3.50000,141.00000,96.00000,31.20000,11.00000,17.30000,214.92700,3.80000,1.70000,53.00000,48.00000,39.00000,64.00000,2.89664,0.70000,4.13806,colic.
@@ -0,0 +1,4 @@
1
+ 36 - 55,masters,high,single,will buy
2
+ 18 - 35,high school,low,single,won't buy
3
+ 18 - 35,masters,high,single,won't buy
4
+ 36 - 55,high school,low,single,will buy
@@ -0,0 +1,21 @@
1
+ Age,Education,Income,Marital Status
2
+ 36 - 55,masters,high,single,will buy
3
+ 18 - 35,high school,low,single,won't buy
4
+ 36 - 55,masters,low,single,will buy
5
+ 18 - 35,bachelors,high,single,won't buy
6
+ < 18,high school,low,single,will buy
7
+ 18 - 35,bachelors,high,married,won't buy
8
+ 36 - 55,bachelors,low,married,won't buy
9
+ > 55,bachelors,high,single,will buy
10
+ 36 - 55,masters,low,married,won't buy
11
+ > 55,masters,low,married,will buy
12
+ 36 - 55,masters,high,single,will buy
13
+ > 55,masters,high,single,will buy
14
+ < 18,high school,high,single,won't buy
15
+ 36 - 55,masters,low,single,will buy
16
+ 36 - 55,high school,low,single,will buy
17
+ < 18,high school,low,married,will buy
18
+ 18 - 35,bachelors,high,married,won't buy
19
+ > 55,high school,high,married,will buy
20
+ > 55,bachelors,low,single,will buy
21
+ 36 - 55,high school,high,married,won't buy
@@ -0,0 +1,34 @@
1
+ require 'rubygems'
2
+ require 'decisiontree'
3
+
4
+ # ---Discrete-----------------------------------------------------------------------------------------
5
+
6
+ # Read in the training data
7
+ training, attributes = [], nil
8
+ File.open('data/discrete-training.txt','r').each_line { |line|
9
+ data = line.strip.split(',')
10
+ attributes ||= data
11
+ training.push(data.collect {|v| (v == 'will buy') || (v == "won't buy") ? (v == 'will buy' ? 1 : 0) : v})
12
+ }
13
+
14
+ # Remove the attribute row from the training data
15
+ training.shift
16
+
17
+ # Instantiate the tree, and train it based on the data (set default to '1')
18
+ dec_tree = DecisionTree::ID3Tree.new(attributes, training, 1, :discrete)
19
+ dec_tree.train
20
+
21
+ #---- Test the tree....
22
+
23
+ # Read in the test cases
24
+ # Note: omit the attribute line (first line), we know the labels from the training data
25
+ test = []
26
+ File.open('data/discrete-test.txt','r').each_line { |line| data = line.strip.split(',')
27
+ test.push(data.collect {|v| (v == 'will buy') || (v == "won't buy") ? (v == 'will buy' ? 1 : 0) : v})
28
+ }
29
+
30
+ # Let the tree predict the output and compare it to the true specified value
31
+ test.each { |t| predict = dec_tree.predict(t); puts "Predict: #{predict} ... True: #{t.last}"; }
32
+
33
+ # Graph the tree, save to 'discrete.png'
34
+ dec_tree.graph("discrete")
@@ -0,0 +1 @@
1
+ Dir[File.join(File.dirname(__FILE__), 'decisiontree/**/*.rb')].sort.each { |lib| require lib }
@@ -0,0 +1,132 @@
1
+ #The MIT License
2
+
3
+ ###Copyright (c) 2007 Ilya Grigorik <ilya AT fortehost DOT com>
4
+
5
+ begin;
6
+ require 'graph/graphviz_dot'
7
+ rescue LoadError
8
+ STDERR.puts "graph/graphviz_dot not installed, graphing functionality not included."
9
+ end
10
+
11
+ class Array
12
+ def classification; collect { |v| v.last }; end
13
+ def count_p; select { |v| v.last == 1 }.size; end
14
+ def count_n; select { |v| v.last == 0 }.size; end
15
+ end
16
+
17
+ module DecisionTree
18
+ class ID3Tree
19
+ Node = Struct.new(:attribute, :threshold, :gain)
20
+ def initialize(attributes, data, default, type)
21
+ @used, @tree, @type = {}, {}, type
22
+ @data, @attributes, @default = data, attributes, default
23
+ end
24
+
25
+ def train(data=@data, attributes=@attributes, default=@default)
26
+ # Choose a fitness algorithm
27
+ case @type
28
+ when :discrete; fitness = proc{|a,b,c| id3_discrete(a,b,c)}
29
+ when :continuous; fitness = proc{|a,b,c| id3_continuous(a,b,c)}
30
+ end
31
+
32
+ return default if data.empty?
33
+ # return classification if all examples have the same classification
34
+ return data.first.last if data.classification.uniq.size == 1
35
+
36
+ # Choose best attribute (1. enumerate all attributes / 2. Pick best attribute)
37
+ performance = attributes.collect { |attribute| fitness.call(data, attributes, attribute) }
38
+ max = performance.max { |a,b| a[0] <=> b[0] }
39
+ best = Node.new(attributes[performance.index(max)], max[1], max[0])
40
+ @used.has_key?(best.attribute) ? @used[best.attribute] += [best.threshold] : @used[best.attribute] = [best.threshold]
41
+ tree, l = {best => {}}, ['gt', 'lt']
42
+
43
+ case @type
44
+ when :continuous
45
+ data.partition { |d| d[attributes.index(best.attribute)] > best.threshold }.each_with_index { |examples, i|
46
+ tree[best][String.new(l[i])] = train(examples, attributes, (data.classification.mode rescue 0), &fitness)
47
+ }
48
+ when :discrete
49
+ values = data.collect { |d| d[attributes.index(best.attribute)] }.uniq.sort
50
+ partitions = values.collect { |val| data.select { |d| d[attributes.index(best.attribute)] == val } }
51
+ partitions.each_with_index { |examples, i|
52
+ tree[best][values[i]] = train(examples, attributes-[values[i]], (data.classification.mode rescue 0), &fitness)
53
+ }
54
+ end
55
+
56
+ @tree = tree
57
+ end
58
+
59
+ # ID3 for binary classification of continuous variables (e.g. healthy / sick based on temperature thresholds)
60
+ def id3_continuous(data, attributes, attribute)
61
+ values, thresholds = data.collect { |d| d[attributes.index(attribute)] }.uniq.sort, []
62
+ values.each_index { |i| thresholds.push((values[i]+(values[i+1].nil? ? values[i] : values[i+1])).to_f / 2) }
63
+ thresholds -= @used[attribute] if @used.has_key? attribute
64
+
65
+ gain = thresholds.collect { |threshold|
66
+ sp = data.partition { |d| d[attributes.index(attribute)] > threshold }
67
+ pos = (sp[0].size).to_f / data.size
68
+ neg = (sp[1].size).to_f / data.size
69
+
70
+ [entropy_num(data.count_p, data.count_n) - pos*entropy_num(sp[0].count_p, sp[0].count_n) - neg*entropy_num(sp[1].count_p, sp[1].count_n), threshold]
71
+ }.max { |a,b| a[0] <=> b[0] }
72
+ end
73
+
74
+ # ID3 for discrete label cases
75
+ def id3_discrete(data, attributes, attribute)
76
+ values = data.collect { |d| d[attributes.index(attribute)] }.uniq.sort
77
+ partitions = values.collect { |val| data.select { |d| d[attributes.index(attribute)] == val } }
78
+ remainder = partitions.collect {|p| (p.size.to_f / data.size) * entropy_num(p.count_p, p.count_n)}.inject(0) {|i,s| s+=i }
79
+
80
+ [entropy_num(data.count_p, data.count_n) - remainder, attributes.index(attribute)]
81
+ end
82
+
83
+ # calculate information based on number of positive and negative classifications
84
+ def entropy_num(p,n); entropy(p.to_f/(p+n),n.to_f/(p+n)); end
85
+
86
+ # calculate Information based on probabilities
87
+ def entropy(p, n)
88
+ p = 0 if p.nan?
89
+ n = 0 if n.nan?
90
+
91
+ if(n < 0.00000001 and p < 0.00000001); return 0
92
+ elsif (p < 0.00000001); return - n.to_f/(p+n)*Math.log(n.to_f/(p+n))/Math.log(2.0)
93
+ elsif (n < 0.00000001); return - p.to_f/(p+n)*Math.log(p.to_f/(p+n))/Math.log(2.0)
94
+ end
95
+
96
+ return (- p.to_f/(p+n)) * Math.log(p.to_f/(p+n))/Math.log(2.0) + (- n.to_f/(p+n)) * Math.log(n.to_f/(p+n))/Math.log(2.0)
97
+ end
98
+
99
+ def predict(test); @type == :discrete ? descend_discrete(@tree, test) : descend_continuous(@tree,test); end
100
+
101
+ def graph(filename)
102
+ dgp = DotGraphPrinter.new(build_tree)
103
+ dgp.write_to_file("#{filename}.png", "png")
104
+ end
105
+
106
+ private
107
+ def descend_continuous(tree, test)
108
+ attr = tree.to_a.first
109
+ return attr[1]['gt'] if attr[1]['gt'].is_a?(Integer) and test[@attributes.index(attr.first.attribute)] >= attr.first.threshold
110
+ return attr[1]['lt'] if attr[1]['lt'].is_a?(Integer) and test[@attributes.index(attr.first.attribute)] < attr.first.threshold
111
+ return descend_continuous(attr[1]['gt'],test) if test[@attributes.index(attr.first.attribute)] >= attr.first.threshold
112
+ return descend_continuous(attr[1]['lt'],test) if test[@attributes.index(attr.first.attribute)] < attr.first.threshold
113
+ end
114
+
115
+ def descend_discrete(tree,test)
116
+ attr = tree.to_a.first
117
+ return attr[1][test[@attributes.index(attr[0].attribute)]] if attr[1][test[@attributes.index(attr[0].attribute)]].is_a?(Integer)
118
+ return descend_discrete(attr[1][test[@attributes.index(attr[0].attribute)]],test)
119
+ end
120
+
121
+ def build_tree(tree = @tree, root = nil)
122
+ return [[root, "#{tree == 1 ? 'true' : 'false'} \n (#{String.new(tree.to_s).object_id})"]] if tree.is_a?(Integer)
123
+
124
+ attr = tree.to_a.first
125
+ mid = root.nil? ? [] : [[root, attr[0].attribute]]
126
+ links = mid + attr[1].keys.collect { |key| [attr[0].attribute, key] }
127
+ attr[1].keys.each { |key| links += build_tree(attr[1][key], key) }
128
+
129
+ return links
130
+ end
131
+ end
132
+ end