cwords 0.1.13 → 0.1.14
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- data/scripts/cwords.rb +2 -2
- metadata +2 -2
data/scripts/cwords.rb
CHANGED
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@@ -29,7 +29,7 @@ options[:plot_words]=nil
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options[:onlyanno]=nil
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options[:dump]=nil
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options[:testing]=nil
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-
options[:rank_all]=
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+
options[:rank_all]=true
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options[:rank_inverse]=nil
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options[:rank_split_median]=nil
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options[:rank_abs]=nil
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@@ -50,7 +50,7 @@ $coptions = OptionParser.new do |opts|
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opts.on( "--onlyanno", "only process annotated (i.e. mirbase) words") {|o| options[:onlyanno] = true}
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# rank control
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opts.on("-x", "--rank_split", "analyze positive and neg. values separetely") {|o| options[:rank_all] =
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opts.on("-x", "--rank_split", "analyze positive and neg. values separetely") {|o| options[:rank_all] = false}
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opts.on("-m", "--rank_split_median", "split ranked list at median") {|o| options[:rank_split_median] = true}
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opts.on("-i", "--rank_inverse", "inverse all ranked lists") {|o| options[:rank_inverse] = true}
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opts.on("-a", "--rank_abs", "rank by absolute value") {|o| options[:rank_abs] = true}
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