curve_fit 0.1.0
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- data/.document +5 -0
- data/.rspec +1 -0
- data/Gemfile +14 -0
- data/LICENSE.txt +201 -0
- data/README.rdoc +152 -0
- data/Rakefile +43 -0
- data/VERSION +1 -0
- data/lib/curve_fit.rb +254 -0
- data/spec/curve_fit_spec.rb +131 -0
- data/spec/spec_helper.rb +12 -0
- metadata +155 -0
data/.document
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data/.rspec
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--color
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data/Gemfile
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source "http://rubygems.org"
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# Add dependencies required to use your gem here.
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# Example:
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# gem "activesupport", ">= 2.3.5"
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# Add dependencies to develop your gem here.
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# Include everything needed to run rake, tests, features, etc.
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group :development do
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gem "rspec", "~> 2.4.0"
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gem "yard", "~> 0.6.0"
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gem "bundler", "~> 1.0.0"
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gem "jeweler", "~> 1.5.2"
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gem "rcov", ">= 0"
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end
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data/LICENSE.txt
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data/README.rdoc
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= curve_fit
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A wrapper around fityk (http://fityk.nieto.pl/) to handle fitting a curve to X+Y data, creating confidence intervals, and projecting up to a ceiling.
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You must have a working installation of cfityk in your path for this library to work.
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== Examples
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The primary use of this library is to take a data array of X+Y points and return to you a trend line, confidence intervals, a best-guess shape and an r-squared value.
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require 'curve_fit'
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cf = CurveFit.new
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cf.fit(
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[
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[ 0, 1000.0 ],
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[ 1, 2003.0 ],
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[ 2, 3010.0 ],
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[ 3, 4084.0 ],
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[ 4, 5012.0 ],
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[ 5, 6075.0 ]
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]
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)
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Returns:
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{
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:data => [
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[0, 1000.0],
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[1, 2003.0],
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[2, 3010.0],
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[3, 4084.0],
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[4, 5012.0],
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[5, 6075.0]
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],
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:trend => [
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[0, 997.27],
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[1, 2010.57],
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[2, 3023.87],
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[3, 4037.1699999999996],
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[4, 5050.469999999999],
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[5, 6063.77]
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],
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:top_confidence => [
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[0, 1010.5636999999999],
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[1, 2030.03089],
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[2, 3049.49808],
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[3, 4068.9652699999997],
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[4, 5088.43246],
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[5, 6107.899649999999]
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],
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:bottom_confidence => [
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[0, 983.9763],
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[1, 1991.1091099999999],
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[2, 2998.24192],
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[3, 4005.3747299999995],
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[4, 5012.50754],
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[5, 6019.64035]
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],
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:ceiling=>[],
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:r_squared=>0.999774,
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:guess=>"Linear"
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}
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You can pass a second argument, which will be the ceiling to project up to. In
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that case, the trend, top and bottom confidence data will be extended out until
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the Y value is >= the ceiling. Additionally, the ceiling line will be
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populated with the ceiling value for each value of X.
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cf.fit(
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[
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[ 0, 1000.0 ],
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[ 1, 2003.0 ],
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[ 2, 3010.0 ],
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[ 3, 4084.0 ],
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[ 4, 5012.0 ],
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[ 5, 6075.0 ]
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],
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10000
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)
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+
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Would extrapolate up to 10000.
|
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+
|
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Currently, this library only supports linear and quadratic fits. By default it
|
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tries both, in that order. You can specify the fits to guess manually, if you
|
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want to narrow things down:
|
87
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+
|
88
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cf.fit(
|
89
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[
|
90
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[ 0, 1000.0 ],
|
91
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+
[ 1, 2003.0 ],
|
92
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+
[ 2, 3010.0 ],
|
93
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[ 3, 4084.0 ],
|
94
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[ 4, 5012.0 ],
|
95
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[ 5, 6075.0 ]
|
96
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],
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10000,
|
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[ "Quadratic", "Linear" ]
|
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)
|
100
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|
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Finally, you can pass a block to manipulate the value of X in the result set. This is often used if your data is a time series - under the hood, we convert the values of X to the position in the array (0..n). This block lets you get the original data back out, and support generating new correct values as you extrapolate to a ceiling.
|
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|
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For example, lets assume we're daily from 2010/1/4.
|
104
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|
105
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cf.fit(
|
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[
|
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[ Time.utc("2010", "1", "4").to_i, 1000.0 ],
|
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[ Time.utc("2010", "1", "5").to_i, 2003.0 ],
|
109
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[ Time.utc("2010", "1", "6").to_i, 3010.0 ],
|
110
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[ Time.utc("2010", "1", "7").to_i, 4084.0 ],
|
111
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[ Time.utc("2010", "1", "8").to_i, 5012.0 ],
|
112
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[ Time.utc("2010", "1", "9").to_i, 6075.0 ]
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],
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10000
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) do |x|
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116
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if x == 0
|
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Time.utc("2011", "1", "4").to_i
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else
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(Time.utc("2011", "1", "4") + ( 60 * 60 * 24 * 1 ))
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end
|
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end
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Will result in the data set, and extrapolated data, having seconds since the epoch for X values.
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|
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== Contributing to curve_fit
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+
* Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet
|
128
|
+
* Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it
|
129
|
+
* Fork the project
|
130
|
+
* Start a feature/bugfix branch
|
131
|
+
* Commit and push until you are happy with your contribution
|
132
|
+
* Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
|
133
|
+
* Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
|
134
|
+
|
135
|
+
== Copyright and License
|
136
|
+
|
137
|
+
Copyright 2010 Opscode, Inc.
|
138
|
+
|
139
|
+
Licensed under the Apache License, Version 2.0 (the "License");
|
140
|
+
you may not use this file except in compliance with the License.
|
141
|
+
You may obtain a copy of the License at
|
142
|
+
|
143
|
+
http://www.apache.org/licenses/LICENSE-2.0
|
144
|
+
|
145
|
+
Unless required by applicable law or agreed to in writing, software
|
146
|
+
distributed under the License is distributed on an "AS IS" BASIS,
|
147
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
148
|
+
See the License for the specific language governing permissions and
|
149
|
+
limitations under the License.
|
150
|
+
|
151
|
+
See LICENSE file for complete license details.
|
152
|
+
|
data/Rakefile
ADDED
@@ -0,0 +1,43 @@
|
|
1
|
+
require 'rubygems'
|
2
|
+
require 'bundler'
|
3
|
+
begin
|
4
|
+
Bundler.setup(:default, :development)
|
5
|
+
rescue Bundler::BundlerError => e
|
6
|
+
$stderr.puts e.message
|
7
|
+
$stderr.puts "Run `bundle install` to install missing gems"
|
8
|
+
exit e.status_code
|
9
|
+
end
|
10
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+
require 'rake'
|
11
|
+
|
12
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+
require 'jeweler'
|
13
|
+
Jeweler::Tasks.new do |gem|
|
14
|
+
# gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
|
15
|
+
gem.name = "curve_fit"
|
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|
+
gem.homepage = "http://github.com/adamhjk/curve_fit"
|
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|
+
gem.license = "Apache 2.0"
|
18
|
+
gem.summary = %Q{Wrapper for curve fitting and confidence around cfityk}
|
19
|
+
gem.description = %Q{Creates curve fitting and confidence intervals from cfityk}
|
20
|
+
gem.email = "adam@opscode.com"
|
21
|
+
gem.authors = ["Adam Jacob"]
|
22
|
+
# Include your dependencies below. Runtime dependencies are required when using your gem,
|
23
|
+
# and development dependencies are only needed for development (ie running rake tasks, tests, etc)
|
24
|
+
# gem.add_runtime_dependency 'jabber4r', '> 0.1'
|
25
|
+
# gem.add_development_dependency 'rspec', '> 1.2.3'
|
26
|
+
end
|
27
|
+
Jeweler::RubygemsDotOrgTasks.new
|
28
|
+
|
29
|
+
require 'rspec/core'
|
30
|
+
require 'rspec/core/rake_task'
|
31
|
+
RSpec::Core::RakeTask.new(:spec) do |spec|
|
32
|
+
spec.pattern = FileList['spec/**/*_spec.rb']
|
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|
+
end
|
34
|
+
|
35
|
+
RSpec::Core::RakeTask.new(:rcov) do |spec|
|
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|
+
spec.pattern = 'spec/**/*_spec.rb'
|
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|
+
spec.rcov = true
|
38
|
+
end
|
39
|
+
|
40
|
+
task :default => :spec
|
41
|
+
|
42
|
+
require 'yard'
|
43
|
+
YARD::Rake::YardocTask.new
|
data/VERSION
ADDED
@@ -0,0 +1 @@
|
|
1
|
+
0.1.0
|
data/lib/curve_fit.rb
ADDED
@@ -0,0 +1,254 @@
|
|
1
|
+
#
|
2
|
+
# Copyright 2010 Opscode, Inc.
|
3
|
+
#
|
4
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
5
|
+
# you may not use this file except in compliance with the License.
|
6
|
+
# You may obtain a copy of the License at
|
7
|
+
#
|
8
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
9
|
+
#
|
10
|
+
# Unless required by applicable law or agreed to in writing, software
|
11
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
12
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
13
|
+
# See the License for the specific language governing permissions and
|
14
|
+
# limitations under the License.
|
15
|
+
|
16
|
+
require 'tempfile'
|
17
|
+
|
18
|
+
# A wrapper around cfityk (http://fityk.nieto.pl/) to handle fitting a curve to X+Y data, creating confidence intervals, and projecting up to a ceiling.
|
19
|
+
#
|
20
|
+
# Also supports basic manipulation of X+Y data files.
|
21
|
+
class CurveFit
|
22
|
+
|
23
|
+
attr_accessor :debug
|
24
|
+
|
25
|
+
def initialize(debug=false)
|
26
|
+
@debug = debug
|
27
|
+
end
|
28
|
+
|
29
|
+
# Loads an x+y style data file as an array of arrays, suitable for passing to the fit method.
|
30
|
+
#
|
31
|
+
# @param [String] filename
|
32
|
+
# The filename to load.
|
33
|
+
# @return [Array] data
|
34
|
+
# An X+Y array:
|
35
|
+
# [ [ X, Y ], [ X, Y ] ]
|
36
|
+
def load_xy_file(filename)
|
37
|
+
xy_data = Array.new
|
38
|
+
File.open(filename, "r") do |xy_file|
|
39
|
+
xy_file.each_line do |line|
|
40
|
+
x, y = line.split(' ')
|
41
|
+
xy_data << [ string_to_number(x), string_to_number(y) ]
|
42
|
+
end
|
43
|
+
end
|
44
|
+
xy_data
|
45
|
+
end
|
46
|
+
|
47
|
+
# Takes a string of digits and converts it to an integer or a float,
|
48
|
+
# depending on whether it rocks the dot. Returns the raw string if nothing
|
49
|
+
# matches.
|
50
|
+
#
|
51
|
+
# @param [String] string
|
52
|
+
# @return [Integer,Float,String] transformed_string
|
53
|
+
def string_to_number(string)
|
54
|
+
case string
|
55
|
+
when /^\d+$/
|
56
|
+
string.to_i
|
57
|
+
when /^\d+.\d$/
|
58
|
+
string.to_f
|
59
|
+
else
|
60
|
+
string
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
# Adds an entry to an x+y style data file.
|
65
|
+
#
|
66
|
+
# @param [String] filename
|
67
|
+
# The filename to append to
|
68
|
+
# @param [String] x
|
69
|
+
# The X value
|
70
|
+
# @param [String] y
|
71
|
+
# The Y value
|
72
|
+
# @return [True]
|
73
|
+
def append_xy_file(filename, x, y)
|
74
|
+
File.open(filename, 'a') do |xy_file|
|
75
|
+
xy_file.puts "#{x} #{y}"
|
76
|
+
end
|
77
|
+
true
|
78
|
+
end
|
79
|
+
|
80
|
+
# Writes a data set out to an X+Y file
|
81
|
+
#
|
82
|
+
# @param [String] filename
|
83
|
+
# If given, the filename to write. Otherwise, creates a tempfile.
|
84
|
+
# @param [Array] data
|
85
|
+
# An X+Y array:
|
86
|
+
# [ [ X, Y ], [ X, Y ] ]
|
87
|
+
# @return [IO] data_file Returns the closed file IO object.
|
88
|
+
def write_xy_file(filename=nil, data)
|
89
|
+
data_file = nil
|
90
|
+
if filename
|
91
|
+
data_file = File.open(filename, "w")
|
92
|
+
else
|
93
|
+
data_file = Tempfile.new("curvefit")
|
94
|
+
filename = data_file.path
|
95
|
+
end
|
96
|
+
|
97
|
+
x_pos = 0
|
98
|
+
data.each do |point|
|
99
|
+
data_file.puts("#{x_pos} #{point[1]}")
|
100
|
+
x_pos += 1
|
101
|
+
end
|
102
|
+
|
103
|
+
data_file.close
|
104
|
+
|
105
|
+
data_file
|
106
|
+
end
|
107
|
+
|
108
|
+
# Given an aray of X,Y data points, guesses the most correct curve (as measured by R-Squared) and
|
109
|
+
# generates a trend line, top and bottom confidence intervals, and optionally projects the trend
|
110
|
+
# to an artifical ceiling.
|
111
|
+
#
|
112
|
+
# @param [Array] data
|
113
|
+
# An array of arrays [[X, Y]..] representing the data set you want to curve fit.
|
114
|
+
#
|
115
|
+
# @param [Number, nil] ceiling
|
116
|
+
# The integer/float Y value to project the curve up to, the 'ceiling'. Nil
|
117
|
+
# means no projection past last X value. Default is nil.
|
118
|
+
#
|
119
|
+
# @param [Array] guess_list
|
120
|
+
# A list of acceptable guesses to use in cfityk. As many of
|
121
|
+
# the following as desired: Linear, Quadratic. Default is all of the above.
|
122
|
+
#
|
123
|
+
# @param [Block] x_transform
|
124
|
+
# A block that will be passed a value for X from the original
|
125
|
+
# data set as an integer (1,2,3, etc), and should return a value to replace
|
126
|
+
# it with that matches the original data set.
|
127
|
+
#
|
128
|
+
# @return [Hash] A hash with the data, trend, top_confidence, and bottom_confidence as arrays of [X, Y], r_square and the guessed curve.
|
129
|
+
#
|
130
|
+
# {
|
131
|
+
# :data => [ [ X, Y ], [ X, Y ] ... ],
|
132
|
+
# :trend => [ [ X, Y ], [ X, Y ] ... ],
|
133
|
+
# :top_confidence => [ [ X, Y ], [X, Y] ...],
|
134
|
+
# :bottom_confidence => [ [ X, Y ], [X, Y] ...],
|
135
|
+
# :ceiling => [ [ X, Y ], [ X, Y ] ],
|
136
|
+
# :r_squared => 99.9764,
|
137
|
+
# :guess => "Quadratic"
|
138
|
+
# }
|
139
|
+
#
|
140
|
+
def fit(data, ceiling=nil, guess_list=["Linear", "Quadratic"], &x_transform)
|
141
|
+
data_file = Tempfile.new("curvefit")
|
142
|
+
x_pos = 0
|
143
|
+
data.each do |point|
|
144
|
+
data_file.puts("#{x_pos} #{point[1]}")
|
145
|
+
x_pos += 1
|
146
|
+
end
|
147
|
+
data_file.close
|
148
|
+
|
149
|
+
guess_data = Hash.new
|
150
|
+
|
151
|
+
guess_list.each do |shape|
|
152
|
+
guess_data[shape] = Hash.new
|
153
|
+
puts "Guessing #{shape} fit..." if @debug
|
154
|
+
IO.popen("cfityk -I -q -c '@0 < '#{data_file.path}'; guess #{shape}; fit; info+ formula in @0; info fit in @0; info errors in @0;'") do |fityk_output|
|
155
|
+
fityk_output.each_line do |line|
|
156
|
+
puts "#{shape}: #{line}" if @debug
|
157
|
+
case line
|
158
|
+
when /R-squared = (.+)/
|
159
|
+
guess_data[shape][:r_squared] = $1.to_f
|
160
|
+
when /(.+) \+ (.+) \* \(x\)/ # 692.1 + 30.633 * (x), linear fit formula
|
161
|
+
first = $1.to_f
|
162
|
+
second = $2.to_f
|
163
|
+
guess_data[shape][:curve_formula] = lambda { |x| first + second * x.to_f }
|
164
|
+
when /(.+) \+ (.+)\*\(x\) \+ (.+)\*\(x\)\^2/ # 1019.43 + 9.543*(x) + 0.202086*(x)^2, quadratic/polynomial fit formula
|
165
|
+
first = $1.to_f
|
166
|
+
second = $2.to_f
|
167
|
+
third = $3.to_f
|
168
|
+
guess_data[shape][:curve_forumla_args] = {
|
169
|
+
1 => first,
|
170
|
+
2 => second,
|
171
|
+
3 => third
|
172
|
+
}
|
173
|
+
guess_data[shape][:curve_formula] = lambda { |x| first + second * x.to_f + third * x.to_f**2 }
|
174
|
+
when /\$_(\d) = (\d+\.\d+) \+\- (\d+\.\d+)/ # $_1 = 692.1 +- 32.0558
|
175
|
+
guess_data[shape][:curve_error_args] ||= Hash.new
|
176
|
+
guess_data[shape][:curve_error_args][$1.to_i] = [ $2.to_f, $3.to_f ]
|
177
|
+
end
|
178
|
+
end
|
179
|
+
end
|
180
|
+
|
181
|
+
if $?.exitstatus != 0
|
182
|
+
raise "cfityk returned status #{$?.exitstatus} when guessing #{shape}, bailing"
|
183
|
+
end
|
184
|
+
|
185
|
+
if guess_data[shape][:r_squared] == 1
|
186
|
+
guess_data[shape][:top_confidence_formula] = guess_data[shape][:curve_formula]
|
187
|
+
guess_data[shape][:bottom_confidence_formula] = guess_data[shape][:curve_formula]
|
188
|
+
else
|
189
|
+
case shape
|
190
|
+
when "Quadratic"
|
191
|
+
curve_error_args = guess_data[shape][:curve_error_args]
|
192
|
+
guess_data[shape][:top_confidence_formula] = lambda { |x| (curve_error_args[1][0] + curve_error_args[1][1]) + (curve_error_args[2][0] + curve_error_args[2][1]) * x.to_f + (curve_error_args[3][0] + + curve_error_args[3][1]) * x.to_f**2 }
|
193
|
+
guess_data[shape][:bottom_confidence_formula] = lambda { |x| (curve_error_args[1][0] - curve_error_args[1][1]) + (curve_error_args[2][0] - curve_error_args[2][1]) * x.to_f + (curve_error_args[3][0] + - curve_error_args[3][1]) * x.to_f**2 }
|
194
|
+
when "Linear"
|
195
|
+
curve_error_args = guess_data[shape][:curve_error_args]
|
196
|
+
guess_data[shape][:top_confidence_formula] = lambda { |x| (curve_error_args[1][0] + curve_error_args[1][1]) + (curve_error_args[2][0] + curve_error_args[2][1]) * x.to_f }
|
197
|
+
guess_data[shape][:bottom_confidence_formula] = lambda { |x| (curve_error_args[1][0] - curve_error_args[1][1]) + (curve_error_args[2][0] - curve_error_args[2][1]) * x.to_f }
|
198
|
+
end
|
199
|
+
end
|
200
|
+
end
|
201
|
+
|
202
|
+
best_fit_name = nil
|
203
|
+
best_fit = nil
|
204
|
+
guess_data.each do |shape, shape_guess|
|
205
|
+
best_fit_name ||= shape
|
206
|
+
best_fit ||= shape_guess
|
207
|
+
if shape_guess[:r_squared] > best_fit[:r_squared]
|
208
|
+
best_fit = shape_guess
|
209
|
+
best_fit_name = shape
|
210
|
+
end
|
211
|
+
end
|
212
|
+
|
213
|
+
trend_line = []
|
214
|
+
top_confidence_line = []
|
215
|
+
bottom_confidence_line = []
|
216
|
+
ceiling_line = []
|
217
|
+
|
218
|
+
x = 0
|
219
|
+
y = 0
|
220
|
+
|
221
|
+
no_ceiling = ceiling.nil?
|
222
|
+
|
223
|
+
while(no_ceiling ? x < data.length : ceiling >= y)
|
224
|
+
y = best_fit[:curve_formula].call(x)
|
225
|
+
y_top_confidence = best_fit[:top_confidence_formula].call(x)
|
226
|
+
y_bottom_confidence = best_fit[:bottom_confidence_formula].call(x)
|
227
|
+
|
228
|
+
if x_transform
|
229
|
+
trend_line << [ x_transform.call(x), y ]
|
230
|
+
top_confidence_line << [ x_transform.call(x), y_top_confidence ]
|
231
|
+
bottom_confidence_line << [ x_transform.call(x), y_bottom_confidence ]
|
232
|
+
ceiling_line << [ x_transform.call(x), ceiling ] unless no_ceiling
|
233
|
+
else
|
234
|
+
trend_line << [ x, y ]
|
235
|
+
top_confidence_line << [ x, y_top_confidence ]
|
236
|
+
bottom_confidence_line << [ x, y_bottom_confidence ]
|
237
|
+
ceiling_line << [ x, ceiling ] unless no_ceiling
|
238
|
+
end
|
239
|
+
|
240
|
+
x += 1
|
241
|
+
end
|
242
|
+
|
243
|
+
{
|
244
|
+
:data => data,
|
245
|
+
:trend => trend_line,
|
246
|
+
:top_confidence => top_confidence_line,
|
247
|
+
:bottom_confidence => bottom_confidence_line,
|
248
|
+
:ceiling => ceiling_line,
|
249
|
+
:r_squared => best_fit[:r_squared],
|
250
|
+
:guess => best_fit_name
|
251
|
+
}
|
252
|
+
end
|
253
|
+
|
254
|
+
end
|
@@ -0,0 +1,131 @@
|
|
1
|
+
require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
|
2
|
+
require 'tempfile'
|
3
|
+
|
4
|
+
describe "CurveFit" do
|
5
|
+
PERFECTLY_LINEAR_DATA = [
|
6
|
+
[ 0, 1000.0 ],
|
7
|
+
[ 1, 2000.0 ],
|
8
|
+
[ 2, 3000.0 ],
|
9
|
+
[ 3, 4000.0 ],
|
10
|
+
[ 4, 5000.0 ],
|
11
|
+
[ 5, 6000.0 ]
|
12
|
+
]
|
13
|
+
|
14
|
+
LINEAR_DATA = [
|
15
|
+
[ 0, 1000.0 ],
|
16
|
+
[ 1, 2003.0 ],
|
17
|
+
[ 2, 3010.0 ],
|
18
|
+
[ 3, 4084.0 ],
|
19
|
+
[ 4, 5012.0 ],
|
20
|
+
[ 5, 6075.0 ]
|
21
|
+
]
|
22
|
+
|
23
|
+
QUADRATIC_DATA = [[0, 1024.0], [1, 1038.0], [2, 1054.0], [3, 1062.0], [4, 1070.0], [5, 1074.0], [6, 1077.0], [7, 1085.0], [8, 1107.0], [9, 1146.0], [10, 1133.0], [11, 1145.0], [12, 1142.0], [13, 1161.0], [14, 1183.0], [15, 1172.0], [16, 1194.0], [17, 1219.0], [18, 1280.0], [19, 1301.0], [20, 1303.0], [21, 1332.0], [22, 1391.0], [23, 1338.0], [24, 1368.0], [25, 1383.0], [26, 1414.0], [27, 1417.0], [28, 1476.0], [29, 1489.0], [30, 1518.0], [31, 1557.0], [32, 1555.0], [33, 1472.0], [34, 1481.0], [35, 1432.0], [36, 1451.0], [37, 1661.0], [38, 1741.0], [39, 1769.0], [40, 1797.0], [41, 1802.0], [42, 1803.0], [43, 1854.0], [44, 1869.0], [45, 1886.0], [46, 1947.0], [47, 2002.0], [48, 1950.0], [49, 2021.0], [50, 2022.0], [51, 2049.0], [52, 2060.0], [53, 2096.0], [54, 2106.0], [55, 2140.0], [56, 2159.0], [57, 2181.0], [58, 2158.0], [59, 2215.0], [60, 2292.0], [61, 2302.0], [62, 2311.0], [63, 2387.0], [64, 2480.0], [65, 2491.0], [66, 2497.0], [67, 2515.0], [68, 2534.0], [69, 2561.0], [70, 2636.0], [71, 2697.0], [72, 2818.0], [73, 2831.0], [74, 2855.0], [75, 2900.0], [76, 2973.0], [77, 2996.0], [78, 3053.0], [79, 3093.0], [80, 3104.0], [81, 3033.0], [82, 3066.0], [83, 3094.0], [84, 3165.0], [85, 3263.0], [86, 3306.0], [87, 3334.0], [88, 3457.0], [89, 3501.0], [90, 3588.0], [91, 3739.0], [92, 3778.0], [93, 3829.0], [94, 3829.0], [95, 3812.0], [96, 3846.0], [97, 3933.0], [98, 3989.0], [99, 4030.0], [100, 4041.0], [101, 4054.0], [102, 4069.0], [103, 4101.0], [104, 4130.0], [105, 4292.0], [106, 4361.0], [107, 4373.0], [108, 4405.0], [109, 4433.0], [110, 4487.0], [111, 4524.0], [112, 4605.0], [113, 4645.0], [114, 4645.0], [115, 4668.0], [116, 4752.0], [117, 4782.0]]
|
24
|
+
|
25
|
+
|
26
|
+
before :each do
|
27
|
+
@cf = CurveFit.new(false)
|
28
|
+
end
|
29
|
+
|
30
|
+
describe "write_xy_file" do
|
31
|
+
it "should write to a tempfile" do
|
32
|
+
data_file = @cf.write_xy_file(nil, PERFECTLY_LINEAR_DATA)
|
33
|
+
File.exists?(data_file.path).should == true
|
34
|
+
end
|
35
|
+
|
36
|
+
it "should write to a file" do
|
37
|
+
tf = Tempfile.new("curve-fit-funtimes")
|
38
|
+
tf.close
|
39
|
+
filename = tf.path
|
40
|
+
tf.unlink
|
41
|
+
data_file = @cf.write_xy_file(filename, PERFECTLY_LINEAR_DATA)
|
42
|
+
File.exists?(filename).should == true
|
43
|
+
File.unlink(filename)
|
44
|
+
end
|
45
|
+
end
|
46
|
+
|
47
|
+
describe "load_xy_file" do
|
48
|
+
it "should read from an XY file" do
|
49
|
+
data_file = @cf.write_xy_file(nil, PERFECTLY_LINEAR_DATA)
|
50
|
+
read_data = @cf.load_xy_file(data_file)
|
51
|
+
read_data.should == PERFECTLY_LINEAR_DATA
|
52
|
+
end
|
53
|
+
end
|
54
|
+
|
55
|
+
describe "append_xy_file" do
|
56
|
+
it "should add a new value to an XY file" do
|
57
|
+
tf = Tempfile.new("curve-fit-funtimes")
|
58
|
+
tf.close
|
59
|
+
filename = tf.path
|
60
|
+
tf.unlink
|
61
|
+
data_file = @cf.write_xy_file(filename, PERFECTLY_LINEAR_DATA)
|
62
|
+
@cf.append_xy_file(filename, 6, 7000.0)
|
63
|
+
appended_data = @cf.load_xy_file(filename)
|
64
|
+
appended_data[6].should == [ 6, 7000.0 ]
|
65
|
+
end
|
66
|
+
end
|
67
|
+
|
68
|
+
describe "fit" do
|
69
|
+
describe "for linear data" do
|
70
|
+
it "should guess linear" do
|
71
|
+
@cf.fit(PERFECTLY_LINEAR_DATA)[:guess].should == "Linear"
|
72
|
+
end
|
73
|
+
|
74
|
+
end
|
75
|
+
|
76
|
+
describe "for quadratic data" do
|
77
|
+
it "should guess quadratic" do
|
78
|
+
@cf.fit(QUADRATIC_DATA)[:guess].should == "Quadratic"
|
79
|
+
end
|
80
|
+
end
|
81
|
+
|
82
|
+
describe "ceilings" do
|
83
|
+
describe "when given" do
|
84
|
+
before :each do
|
85
|
+
@fit = @cf.fit(PERFECTLY_LINEAR_DATA, 10000)
|
86
|
+
end
|
87
|
+
|
88
|
+
it "should be projected to" do
|
89
|
+
@fit[:data].length.should == 6
|
90
|
+
@fit[:trend].length.should == 11
|
91
|
+
@fit[:top_confidence].length.should == 11
|
92
|
+
@fit[:bottom_confidence].length.should == 11
|
93
|
+
end
|
94
|
+
|
95
|
+
it "should generate a ceiling line as long as the trend line" do
|
96
|
+
@fit[:ceiling].length.should == @fit[:trend].length
|
97
|
+
end
|
98
|
+
|
99
|
+
it "should always have the y value of the ceiling" do
|
100
|
+
@fit[:ceiling].each { |tuple| tuple[1].should == 10000 }
|
101
|
+
end
|
102
|
+
end
|
103
|
+
|
104
|
+
describe "when nil" do
|
105
|
+
it "should have an empty ceiling line" do
|
106
|
+
fit = @cf.fit(PERFECTLY_LINEAR_DATA)
|
107
|
+
fit[:ceiling].should == []
|
108
|
+
end
|
109
|
+
end
|
110
|
+
end
|
111
|
+
|
112
|
+
describe "when r-squared is 1.0" do
|
113
|
+
it "should re-use the fit formula for the trend and confidence intervals" do
|
114
|
+
linear_fit = @cf.fit(PERFECTLY_LINEAR_DATA)
|
115
|
+
linear_fit[:data].should == linear_fit[:trend]
|
116
|
+
linear_fit[:data].should == linear_fit[:top_confidence]
|
117
|
+
linear_fit[:data].should == linear_fit[:bottom_confidence]
|
118
|
+
end
|
119
|
+
end
|
120
|
+
|
121
|
+
describe "when r-squared is not 1.0" do
|
122
|
+
it "should generate different trend and confidence intervals" do
|
123
|
+
linear_fit = @cf.fit(LINEAR_DATA)
|
124
|
+
linear_fit[:data].should_not == linear_fit[:trend]
|
125
|
+
linear_fit[:data].should_not == linear_fit[:top_confidence]
|
126
|
+
linear_fit[:data].should_not == linear_fit[:bottom_confidence]
|
127
|
+
end
|
128
|
+
end
|
129
|
+
end
|
130
|
+
|
131
|
+
end
|
data/spec/spec_helper.rb
ADDED
@@ -0,0 +1,12 @@
|
|
1
|
+
$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
|
2
|
+
$LOAD_PATH.unshift(File.dirname(__FILE__))
|
3
|
+
require 'rspec'
|
4
|
+
require 'curve_fit'
|
5
|
+
|
6
|
+
# Requires supporting files with custom matchers and macros, etc,
|
7
|
+
# in ./support/ and its subdirectories.
|
8
|
+
Dir["#{File.dirname(__FILE__)}/support/**/*.rb"].each {|f| require f}
|
9
|
+
|
10
|
+
RSpec.configure do |config|
|
11
|
+
|
12
|
+
end
|
metadata
ADDED
@@ -0,0 +1,155 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: curve_fit
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
hash: 27
|
5
|
+
prerelease: false
|
6
|
+
segments:
|
7
|
+
- 0
|
8
|
+
- 1
|
9
|
+
- 0
|
10
|
+
version: 0.1.0
|
11
|
+
platform: ruby
|
12
|
+
authors:
|
13
|
+
- Adam Jacob
|
14
|
+
autorequire:
|
15
|
+
bindir: bin
|
16
|
+
cert_chain: []
|
17
|
+
|
18
|
+
date: 2011-01-04 00:00:00 -08:00
|
19
|
+
default_executable:
|
20
|
+
dependencies:
|
21
|
+
- !ruby/object:Gem::Dependency
|
22
|
+
type: :development
|
23
|
+
prerelease: false
|
24
|
+
name: rspec
|
25
|
+
version_requirements: &id001 !ruby/object:Gem::Requirement
|
26
|
+
none: false
|
27
|
+
requirements:
|
28
|
+
- - ~>
|
29
|
+
- !ruby/object:Gem::Version
|
30
|
+
hash: 31
|
31
|
+
segments:
|
32
|
+
- 2
|
33
|
+
- 4
|
34
|
+
- 0
|
35
|
+
version: 2.4.0
|
36
|
+
requirement: *id001
|
37
|
+
- !ruby/object:Gem::Dependency
|
38
|
+
type: :development
|
39
|
+
prerelease: false
|
40
|
+
name: yard
|
41
|
+
version_requirements: &id002 !ruby/object:Gem::Requirement
|
42
|
+
none: false
|
43
|
+
requirements:
|
44
|
+
- - ~>
|
45
|
+
- !ruby/object:Gem::Version
|
46
|
+
hash: 7
|
47
|
+
segments:
|
48
|
+
- 0
|
49
|
+
- 6
|
50
|
+
- 0
|
51
|
+
version: 0.6.0
|
52
|
+
requirement: *id002
|
53
|
+
- !ruby/object:Gem::Dependency
|
54
|
+
type: :development
|
55
|
+
prerelease: false
|
56
|
+
name: bundler
|
57
|
+
version_requirements: &id003 !ruby/object:Gem::Requirement
|
58
|
+
none: false
|
59
|
+
requirements:
|
60
|
+
- - ~>
|
61
|
+
- !ruby/object:Gem::Version
|
62
|
+
hash: 23
|
63
|
+
segments:
|
64
|
+
- 1
|
65
|
+
- 0
|
66
|
+
- 0
|
67
|
+
version: 1.0.0
|
68
|
+
requirement: *id003
|
69
|
+
- !ruby/object:Gem::Dependency
|
70
|
+
type: :development
|
71
|
+
prerelease: false
|
72
|
+
name: jeweler
|
73
|
+
version_requirements: &id004 !ruby/object:Gem::Requirement
|
74
|
+
none: false
|
75
|
+
requirements:
|
76
|
+
- - ~>
|
77
|
+
- !ruby/object:Gem::Version
|
78
|
+
hash: 7
|
79
|
+
segments:
|
80
|
+
- 1
|
81
|
+
- 5
|
82
|
+
- 2
|
83
|
+
version: 1.5.2
|
84
|
+
requirement: *id004
|
85
|
+
- !ruby/object:Gem::Dependency
|
86
|
+
type: :development
|
87
|
+
prerelease: false
|
88
|
+
name: rcov
|
89
|
+
version_requirements: &id005 !ruby/object:Gem::Requirement
|
90
|
+
none: false
|
91
|
+
requirements:
|
92
|
+
- - ">="
|
93
|
+
- !ruby/object:Gem::Version
|
94
|
+
hash: 3
|
95
|
+
segments:
|
96
|
+
- 0
|
97
|
+
version: "0"
|
98
|
+
requirement: *id005
|
99
|
+
description: Creates curve fitting and confidence intervals from cfityk
|
100
|
+
email: adam@opscode.com
|
101
|
+
executables: []
|
102
|
+
|
103
|
+
extensions: []
|
104
|
+
|
105
|
+
extra_rdoc_files:
|
106
|
+
- LICENSE.txt
|
107
|
+
- README.rdoc
|
108
|
+
files:
|
109
|
+
- .document
|
110
|
+
- .rspec
|
111
|
+
- Gemfile
|
112
|
+
- LICENSE.txt
|
113
|
+
- README.rdoc
|
114
|
+
- Rakefile
|
115
|
+
- VERSION
|
116
|
+
- lib/curve_fit.rb
|
117
|
+
- spec/curve_fit_spec.rb
|
118
|
+
- spec/spec_helper.rb
|
119
|
+
has_rdoc: true
|
120
|
+
homepage: http://github.com/adamhjk/curve_fit
|
121
|
+
licenses:
|
122
|
+
- Apache 2.0
|
123
|
+
post_install_message:
|
124
|
+
rdoc_options: []
|
125
|
+
|
126
|
+
require_paths:
|
127
|
+
- lib
|
128
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
129
|
+
none: false
|
130
|
+
requirements:
|
131
|
+
- - ">="
|
132
|
+
- !ruby/object:Gem::Version
|
133
|
+
hash: 3
|
134
|
+
segments:
|
135
|
+
- 0
|
136
|
+
version: "0"
|
137
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
138
|
+
none: false
|
139
|
+
requirements:
|
140
|
+
- - ">="
|
141
|
+
- !ruby/object:Gem::Version
|
142
|
+
hash: 3
|
143
|
+
segments:
|
144
|
+
- 0
|
145
|
+
version: "0"
|
146
|
+
requirements: []
|
147
|
+
|
148
|
+
rubyforge_project:
|
149
|
+
rubygems_version: 1.3.7
|
150
|
+
signing_key:
|
151
|
+
specification_version: 3
|
152
|
+
summary: Wrapper for curve fitting and confidence around cfityk
|
153
|
+
test_files:
|
154
|
+
- spec/curve_fit_spec.rb
|
155
|
+
- spec/spec_helper.rb
|