crb-blast 0.6.8 → 0.6.9

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: 0667a895d64d87a7ec7078342b9449d185d5fc8c
4
- data.tar.gz: a0b4d4ffc83573e180beb7c84e778d21c3250155
3
+ metadata.gz: fe3c0ea2b11b20a5da0099e43152cdb006f39d7a
4
+ data.tar.gz: cd695675db0a794c18df16ffdfb50b4cf914d960
5
5
  SHA512:
6
- metadata.gz: c08e2203df9f0a077a14373b3e7f6a7b1b8d5281a7e55754448befe31af46f1247d66a7251c402610214f029f95ad02ae62074b431a9aefbc03d62b4eb8a5dd9
7
- data.tar.gz: 8233a2eab64a5fceb841d601904b570eb160de41a6ddeeba5ea80a669823d3da9b15d9e0b095e37d6b47e09ae43cd1261028d33f4037d56dea6c9f91fdcc37e1
6
+ metadata.gz: 3f906c76669af413b2d4d4bbd9fb267abfb2ec90685a99aac646552c0eb81b236ae1a273012be5c142531bdd0f67aec9f19d74174c19546dcdec5807649d277f
7
+ data.tar.gz: 3412a53cb88999dee5cdae0d5f3e75d06c64dac5bcc9eddb880f6a5d48e25d41a716ff351d482e96f45262e1795485c63f6a348fbe0a6f2862f39ad31997ee9c
@@ -4,7 +4,7 @@ require File.expand_path('../lib/crb-blast/version', __FILE__)
4
4
  Gem::Specification.new do |gem|
5
5
  gem.name = 'crb-blast'
6
6
  gem.version = CRB_Blast::VERSION::STRING.dup
7
- gem.date = '2015-05-19'
7
+ gem.date = '2017-02-06'
8
8
  gem.summary = "Run conditional reciprocal best blast"
9
9
  gem.description = "See summary"
10
10
  gem.authors = ["Chris Boursnell", "Richard Smith-Unna"]
@@ -203,7 +203,7 @@ module CRB_Blast
203
203
  cmd2 << " -max_target_seqs 50 "
204
204
  if bin2=="blastn"
205
205
  cmd2 << " -dust no "
206
- elsif bin2=~/blastx/ or bin2=~/blastp/ or bin2=~/tblastn/
206
+ elsif bin1=="blastx" or bin1=="blastp" or bin1=="tblastn"
207
207
  cmd2 << " -seg no "
208
208
  end
209
209
  cmd2 << " -num_threads #{threads}"
@@ -241,9 +241,9 @@ module CRB_Blast
241
241
  cmd1 = "#{bin1} -query #{thread} -db #{@working_dir}/#{@target_name} "
242
242
  cmd1 << " -out #{thread}.blast -evalue #{evalue} "
243
243
  cmd1 << " -outfmt \"6 std qlen slen\" "
244
- if bin1=~/blastn/
244
+ if bin1=="blastn"
245
245
  cmd1 << " -dust no "
246
- elsif bin1=~/blastx/ or bin1=~/blastp/ or bin1=~/tblastn/
246
+ elsif bin1=="blastx" or bin1=="blastp" or bin1=="tblastn"
247
247
  cmd1 << " -seg no "
248
248
  end
249
249
  cmd1 << " -soft_masking false "
@@ -3,7 +3,7 @@ module CRB_Blast
3
3
  module VERSION
4
4
  MAJOR = 0
5
5
  MINOR = 6
6
- PATCH = 8
6
+ PATCH = 9
7
7
  BUILD = nil
8
8
 
9
9
  STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: crb-blast
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.6.8
4
+ version: 0.6.9
5
5
  platform: ruby
6
6
  authors:
7
7
  - Chris Boursnell
@@ -9,7 +9,7 @@ authors:
9
9
  autorequire:
10
10
  bindir: bin
11
11
  cert_chain: []
12
- date: 2015-05-19 00:00:00.000000000 Z
12
+ date: 2017-02-06 00:00:00.000000000 Z
13
13
  dependencies:
14
14
  - !ruby/object:Gem::Dependency
15
15
  name: trollop