crb-blast 0.6.8 → 0.6.9

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: a0b4d4ffc83573e180beb7c84e778d21c3250155
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data/crb-blast.gemspec

@@ -4,7 +4,7 @@ require File.expand_path('../lib/crb-blast/version', __FILE__)
 Gem::Specification.new do |gem|
   gem.name        = 'crb-blast'
   gem.version     = CRB_Blast::VERSION::STRING.dup
-  gem.date        = '2015-05-19'
+  gem.date        = '2017-02-06'
   gem.summary     = "Run conditional reciprocal best blast"
   gem.description = "See summary"
   gem.authors     = ["Chris Boursnell", "Richard Smith-Unna"]

data/lib/crb-blast/crb-blast.rb

@@ -203,7 +203,7 @@ module CRB_Blast
       cmd2 << " -max_target_seqs 50 "
       if bin2=="blastn"
         cmd2 << " -dust no "
-      elsif bin2=~/blastx/ or bin2=~/blastp/ or bin2=~/tblastn/
+      elsif bin1=="blastx" or bin1=="blastp" or bin1=="tblastn"
         cmd2 << " -seg no "
       end
       cmd2 << " -num_threads #{threads}"
@@ -241,9 +241,9 @@ module CRB_Blast
           cmd1 = "#{bin1} -query #{thread} -db #{@working_dir}/#{@target_name} "
           cmd1 << " -out #{thread}.blast -evalue #{evalue} "
           cmd1 << " -outfmt \"6 std qlen slen\" "
-          if bin1=~/blastn/
+          if bin1=="blastn"
             cmd1 << " -dust no "
-          elsif bin1=~/blastx/ or bin1=~/blastp/ or bin1=~/tblastn/
+          elsif bin1=="blastx" or bin1=="blastp" or bin1=="tblastn"
             cmd1 << " -seg no "
           end
           cmd1 << " -soft_masking false "

data/lib/crb-blast/version.rb

@@ -3,7 +3,7 @@ module CRB_Blast
   module VERSION
     MAJOR = 0
     MINOR = 6
-    PATCH = 8
+    PATCH = 9
     BUILD = nil
 
     STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: crb-blast
 version: !ruby/object:Gem::Version
-  version: 0.6.8
+  version: 0.6.9
 platform: ruby
 authors:
 - Chris Boursnell
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-05-19 00:00:00.000000000 Z
+date: 2017-02-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: trollop