coderunner 0.17.5 → 0.17.6

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 943104c85d335c22084f38ec638699ce3bb32100
+  data.tar.gz: a839a1f4ecdc6c99aa99a3d1c177195708bd4470
+SHA512:
+  metadata.gz: 0f807bb516152258b05156737b2f8422623cf64851490fb482cccb3e61e5c67805d6723db9cfea99013861c7e2a90845edc4c336c241495a61455218da07a91e
+  data.tar.gz: 79c3e57c77f52c44d984d0c184e687b2cf3a241f1be417c818cd156aba5de3ce8d22a2231cf01e2e6921aa1ed5b503b8c1082dd9a81b044f3ad244bacf121537

data/VERSION

@@ -1 +1 @@
-0.17.5
+0.17.6

data/coderunner.gemspec

@@ -2,14 +2,17 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
+# stub: coderunner 0.17.6 ruby lib
+# stub: ext/extconf.rb
 
 Gem::Specification.new do |s|
   s.name = "coderunner"
-  s.version = "0.17.5"
+  s.version = "0.17.6"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.require_paths = ["lib"]
   s.authors = ["Edmund Highcock"]
-  s.date = "2015-09-16"
+  s.date = "2015-11-05"
   s.description = "CodeRunner is a framework for the automated running and analysis of simulations. It automatically generates any necessary input files, organises the output data and analyses it. Because it is a modular system, it can easily be customised to work with any system and any simulation code. One of its greatest strengths is that it is independent of any one simulation code; thus it can easily plot and compare the data from different codes."
   s.email = "edmundhighcock@sourceforge.net"
   s.executables = ["coderunner", "coderunnerrepo"]
@@ -94,14 +97,13 @@ Gem::Specification.new do |s|
   ]
   s.homepage = "http://coderunner.sourceforge.net"
   s.licenses = ["GPLv3"]
-  s.require_paths = ["lib"]
   s.required_ruby_version = Gem::Requirement.new(">= 1.9.1")
   s.rubyforge_project = "coderunner"
-  s.rubygems_version = "1.8.23"
+  s.rubygems_version = "2.2.2"
   s.summary = "A framework for the automated running and analysis of simulations."
 
   if s.respond_to? :specification_version then
-    s.specification_version = 3
+    s.specification_version = 4
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
       s.add_runtime_dependency(%q<graphkit>, [">= 0.4.2"])

data/lib/coderunner.rb

@@ -202,6 +202,7 @@ EOF
 		["available_modlets", "av", 0, 'List the available modlets for the code module.', [], [:C]],
 		["available_defaults_files", "avd", 0, 'List the defaults files for the code module.', [], [:C]],
 		["cancel", "can", 0, 'Cancel the specified job.', [], [:j, :f, :U, :N]],
+		["change_run_id", "cri", 1, 'Changes the id of a given set of runs to a new set of ids', ['new_ids'], [:j, :f, :U, :N]],
 		["code_command", "cc", 1, 'Call a class method of the run class. Effectively this will call run_class.class_eval(command). See documentation for whichever code module is in use.', ['command'], []],
 		["concat", "concat", 1, 'Concatenates NetCDF output files together. File is output in the CR root directory.', ['output file'], [:j, :f, :U, :N]],
 		["continue_in_new_folder", "cnf", 1, 'Make a new folder in the parent directory and copy all coderunner configuration files to that folder. If options j or f are specified, copy all matching runs to that new folder.', ['folder'], [:j, :f, :U, :N]],

data/lib/coderunner/class_methods.rb

@@ -77,6 +77,38 @@ class CodeRunner
     runner.continue_in_new_folder(folder, options)
   end
 
+  # Change the id of a given run to another integer
+  def self.change_run_id(new_ids, copts={})
+    return unless Feedback.get_boolean("Warning: changing the id of a run does "\
+                                       "NOT change the restart information "\
+                                       "of any run which was restarted from "\
+                                       "it! Please confirm.")
+
+    runner_all = fetch_runner()
+    runs_all = runner_all.filtered_ids.map{|id| runner.combined_run_list[id]}
+    runner = fetch_runner(copts)
+    runs = runner.filtered_ids.map{|id| runner.combined_run_list[id]}
+
+    new_ids = new_ids.split(',').map(&:to_i)
+
+    if new_ids.length != runs.length
+      eputs "Error: New ids and list of runs are not the same length."
+      return
+    end
+
+    existing_ids = []
+    runs_all.each{|r| existing_ids << r.id}
+
+    runs.each_with_index do |r, i|
+      if existing_ids.include?new_ids[i]
+        eputs "Error: id #{new_ids[i]} already exists! Skipping..."
+        next
+      end
+
+      r.change_id(new_ids[i])
+    end
+  end
+
   # Method which concatenates NetCDF output files 
   def self.concat(name, copts={})
     begin
@@ -1044,6 +1076,6 @@ OPTIONS
 EOF
      #help.gsub(/(.{63,73} |.{73})/){"#$1\n\t"}.paginate
      help.paginate
-    end
+  end
 
 end

data/lib/coderunner/instance_methods.rb

@@ -372,7 +372,7 @@ class CodeRunner
 	# If the custom class has already been set up, this method just returns the class.
 
 
-		def self.setup_run_class(code, options={})
+      def self.setup_run_class(code, options={})
 # 		logf(:setup_code)
 # 		log(:code, code)
 			
@@ -471,7 +471,7 @@ class CodeRunner
 # 			ep 'finished'
 
 		return run_class
-	end
+      end
 
 	# Traverse the directory tree below the root folder, detecting and analysing all runs within that folder. Although runs submitted by CodeRunner will all be in one folder in the root folder, it is not necessary for the runs to be organised like that. This is because CodeRunner can also be used to analyse runs which it did not submit.
 	#

metadata

@@ -1,206 +1,181 @@
 --- !ruby/object:Gem::Specification
 name: coderunner
 version: !ruby/object:Gem::Version
-  version: 0.17.5
-  prerelease: 
+  version: 0.17.6
 platform: ruby
 authors:
 - Edmund Highcock
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-09-16 00:00:00.000000000 Z
+date: 2015-11-05 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: graphkit
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.4.2
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.4.2
 - !ruby/object:Gem::Dependency
   name: parallelpipes
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.0.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.0.0
 - !ruby/object:Gem::Dependency
   name: rubyhacks
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.1.4
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.1.4
 - !ruby/object:Gem::Dependency
   name: rb-gsl
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 1.12.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 1.12.0
 - !ruby/object:Gem::Dependency
   name: gsl_extras
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.3.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.3.0
 - !ruby/object:Gem::Dependency
   name: hostmanager
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 0.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 0.1.0
 - !ruby/object:Gem::Dependency
   name: command-line-flunky
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 0.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 0.1.0
 - !ruby/object:Gem::Dependency
   name: git
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.2.9
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.2.9
 - !ruby/object:Gem::Dependency
   name: shoulda
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: '0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
   name: rdoc
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '3.12'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '3.12'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 1.0.0
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>'
+    - - ">"
       - !ruby/object:Gem::Version
         version: 1.0.0
 - !ruby/object:Gem::Dependency
   name: jeweler
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 2.0.0
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 2.0.0
 description: CodeRunner is a framework for the automated running and analysis of simulations.
@@ -220,7 +195,7 @@ extra_rdoc_files:
 - README.md
 - README.rdoc
 files:
-- .document
+- ".document"
 - Gemfile
 - LICENSE.txt
 - README.md
@@ -294,26 +269,25 @@ files:
 homepage: http://coderunner.sourceforge.net
 licenses:
 - GPLv3
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: 1.9.1
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: coderunner
-rubygems_version: 1.8.23
+rubygems_version: 2.2.2
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: A framework for the automated running and analysis of simulations.
 test_files: []