cmdtabs 0.1.0

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA256:
+  metadata.gz: 112a3fc1f558b0175f2d2905444c7a139204a600e2ba59d096fcbe616d48f0e5
+  data.tar.gz: be9484e39d920387ed525ae22efa8bf74ba8c176bcd3fa85cd3094557c320c6d
+SHA512:
+  metadata.gz: 0a3ac38dde1c8675a225674edae8a4c580928ede5cb68c97fd218a36bf1592390fe8b29dbddfae08bd7343f6aad77149bd21eab0d2f7dfdb28ca1a0b0bc31455
+  data.tar.gz: e537e117d62911b7bb43025e9952ee1ff0f3a7a9af868471fb95351cd463206926be2a97d24e00aa922ad06a55d5a812173e9b752055e9690606c8e426372b8f

data/.github/workflows/main.yml

@@ -0,0 +1,18 @@
+name: Ruby
+
+on: [push,pull_request]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: 3.0.1
+    - name: Run the default task
+      run: |
+        gem install bundler -v 2.2.15
+        bundle install
+        bundle exec rake

data/.gitignore

@@ -0,0 +1,11 @@
+/.bundle/
+/.yardoc
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+
+# rspec failure tracking
+.rspec_status

data/.rspec

@@ -0,0 +1,3 @@
+--format documentation
+--color
+--require spec_helper

data/.rubocop.yml

@@ -0,0 +1,13 @@
+AllCops:
+  TargetRubyVersion: 2.4
+
+Style/StringLiterals:
+  Enabled: true
+  EnforcedStyle: double_quotes
+
+Style/StringLiteralsInInterpolation:
+  Enabled: true
+  EnforcedStyle: double_quotes
+
+Layout/LineLength:
+  Max: 120

data/CODE_OF_CONDUCT.md

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+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our community a harassment-free experience for everyone, regardless of age, body size, visible or invisible disability, ethnicity, sex characteristics, gender identity and expression, level of experience, education, socio-economic status, nationality, personal appearance, race, religion, or sexual identity and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming, diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes, and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of acceptable behavior and will take appropriate and fair corrective action in response to any behavior that they deem inappropriate, threatening, offensive, or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, and will communicate reasons for moderation decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when an individual is officially representing the community in public spaces. Examples of representing our community include using an official e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported to the community leaders responsible for enforcement at seoanezonjic@hotmail.com. All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing clarity around the nature of the violation and an explanation of why the behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, for a specified period of time. This includes avoiding interactions in community spaces as well as external channels like social media. Violating these terms may lead to a temporary or permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public communication with the community for a specified period of time. No public or private interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, is allowed during this period. Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community standards, including sustained inappropriate behavior,  harassment of an individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 2.0,
+available at https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at https://www.contributor-covenant.org/translations.

data/Gemfile

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+# frozen_string_literal: true
+
+source "https://rubygems.org"
+
+# Specify your gem's dependencies in cmdtabs.gemspec
+gemspec
+
+gem "rake", "~> 13.0"
+
+gem "rspec", "~> 3.0"
+
+gem "rubocop", "~> 1.7"

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2022 seoanezonjic
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# Cmdtabs
+
+Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/cmdtabs`. To experiment with that code, run `bin/console` for an interactive prompt.
+
+TODO: Delete this and the text above, and describe your gem
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'cmdtabs'
+```
+
+And then execute:
+
+    $ bundle install
+
+Or install it yourself as:
+
+    $ gem install cmdtabs
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and the created tag, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/cmdtabs. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [code of conduct](https://github.com/[USERNAME]/cmdtabs/blob/master/CODE_OF_CONDUCT.md).
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT).
+
+## Code of Conduct
+
+Everyone interacting in the Cmdtabs project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/[USERNAME]/cmdtabs/blob/master/CODE_OF_CONDUCT.md).

data/Rakefile

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+# frozen_string_literal: true
+
+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+require "rubocop/rake_task"
+
+RuboCop::RakeTask.new
+
+task default: %i[spec rubocop]

data/bin/aggregate_column_data.rb

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+#! /usr/bin/env ruby
+
+require 'optparse'
+
+options = {}
+OptionParser.new do |opts|
+	opts.banner = "Usage: #{File.basename(__FILE__)} [options]"
+
+  options[:input] = nil
+  opts.on("-i", "--input_file PATH", "Path to input file") do |item|
+    options[:input] = item
+  end
+
+  options[:col_index] = nil
+  opts.on("-x", "--column_index INTEGER", "Column index (0 based) to use as reference") do |item|
+    options[:col_index] = item.to_i
+  end
+
+  options[:sep] = ','
+  opts.on("-s", "--separator STRING", "Character separator when collapse data") do |item|
+    options[:sep] = item
+  end
+
+  options[:col_aggregate] = nil
+  opts.on("-a", "--column_aggregate INTEGER", "Column index (0 based) to extract data and join for each id in column index") do |item|
+    options[:col_aggregate] = item.to_i
+  end
+
+  opts.on_tail("-h", "--help", "Show this message") do
+    puts opts
+    exit
+  end
+end.parse!
+
+
+agg_data = {}
+if options[:input] == '-'
+	input = STDIN
+else
+	input = File.open(options[:input])
+end
+input.each do |line|
+	fields = line.chomp.split("\t")
+	key = fields[options[:col_index]]
+	val = fields[options[:col_aggregate]]
+	query = agg_data[key]
+	if query.nil?
+		agg_data[key] = [val]
+	else
+		query << val
+	end
+end
+
+agg_data.each do |key, values|
+	STDOUT.puts "#{key}\t#{values.join(options[:sep])}"
+end

data/bin/create_metric_table.rb

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+#!/usr/bin/env ruby
+
+metric_file = ARGV[0]
+fixCols = ARGV[1].split(',')
+output = ARGV[2]
+name_tag = fixCols.shift
+fixColNumber = fixCols.length
+
+hash = {}
+
+varTags = []
+File.open(ARGV[0]).each do |line|
+	line.chomp!
+	fields = line.split("\t")
+	name = fields.shift
+	fixFields = fields[0..fixColNumber-1]
+	varFields = fields[fixColNumber..fixColNumber+1]
+	varTags << varFields.first if !varTags.include?(varFields.first)
+
+	query = hash[name]
+	if query.nil?
+		hash[name] = {varFields.first => varFields.last}
+		fixCols.each_with_index do |tag, i|
+			hash[name][tag] = fixFields[i] 
+		end
+	else
+		query[varFields.first] = varFields.last
+	end
+end
+
+metric_table = File.new(output, "w")
+if fixColNumber > 0
+	header="#{name_tag}\t#{fixCols.join("\t")}\t#{varTags.join("\t")}"
+else
+	header="#{name_tag}\t#{varTags.join("\t")}"
+end
+
+metric_table.puts(header)
+allTags = fixCols.concat(varTags)
+hash.each do |name, fields|
+ 	array_temp = [name]
+ 	allTags.each do |tag|
+ 		array_temp << fields[tag]
+ 	end
+ 	metric_table.puts(array_temp.join("\t"))
+end
+metric_table.close()
+
+

data/bin/desaggregate_column_data.rb

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+#! /usr/bin/env ruby
+
+require 'optparse'
+
+options = {}
+OptionParser.new do |opts|
+  opts.banner = "Usage: #{__FILE__} [options]"
+
+  options[:input] = nil
+  opts.on("-i", "--input_file PATH", "Path to input file") do |item|
+    options[:input] = item
+  end
+
+  options[:col_index] = nil
+  opts.on("-x", "--column_index INTEGER", "Column index (0 based) to use as reference") do |item|
+    options[:col_index] = item.to_i
+  end
+
+  options[:sep] = ","
+  opts.on("-s", "--sep_char STRING", "Field character delimiter") do |item|
+    options[:sep] = item
+  end
+
+  opts.on_tail("-h", "--help", "Show this message") do
+    puts opts
+    exit
+  end
+end.parse!
+
+
+agg_data = {}
+if options[:input] == '-'
+	input = STDIN
+else
+	input = File.open(options[:input])
+end
+input.each do |line|
+	fields = line.chomp.split("\t")
+	target_field = fields[options[:col_index]]
+	target_field.split(options[:sep]).each do |val|
+		record = fields[0..(options[:col_index]-1)] + [val] + fields[(options[:col_index] + 1)..fields.length]
+		#record = fields[0..(options[:col_index] + 1)] + [val] + fields[(options[:col_index] + 1)..fields.length]
+		STDOUT.puts record.join("\t")
+	end
+end
+

data/bin/intersect_columns.rb

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+#! /usr/bin/env ruby
+
+require 'optparse'
+
+#####################################################################
+## METHODS
+######################################################################
+
+def load_records(file, cols, sep)
+	recs = {}
+	File.open(file).each do |line|
+		fields = line.chomp.split(sep)
+		recs[cols.map{|c| fields[c]}] = true
+	end
+	return recs.keys
+end
+
+def print_recs(recs, sep)
+	recs.each do |rec|
+		puts rec.join(sep)
+	end
+end
+
+#####################################################################
+## OPTPARSE
+######################################################################
+
+options = {}
+OptionParser.new do |opts|
+  opts.banner = "Usage: #{File.basename(__FILE__)} [options]"
+
+  options[:a_file] = nil
+  opts.on("-a", "--a_file PATH", "Path to input file") do |item|
+    options[:a_file] = item
+  end
+
+  options[:b_file] = nil
+  opts.on("-b", "--a_file PATH", "Path to input file") do |item|
+    options[:b_file] = item
+  end
+
+  options[:a_cols] = [0]
+  opts.on("-A", "--a_cols STRING", "Index of columns in base 0 to compare") do |item|
+    options[:a_cols] = item.split(',').map{|n| n.to_i}
+  end
+
+  options[:b_cols] = [0]
+  opts.on("-B", "--b_cols STRING", "Index of columns in base 0 to compare") do |item|
+    options[:b_cols] = item.split(',').map{|n| n.to_i}
+  end
+
+  options[:count] = false
+  opts.on("-c", "--count", "Only compute number of matches") do
+    options[:count] = true
+  end
+
+  options[:keep] = 'c'
+  opts.on("-k", "--keep STRING", "Keep records. c for common, 'a' for specific of file a, 'b' for specific of file b and 'ab' for specific of file a AND b") do |item|
+    options[:keep] = item
+  end
+
+  options[:sep] = "\t"
+  opts.on("-s", "--separator STRING", "column character separator") do |item|
+    options[:sep] = item
+  end
+
+  opts.on_tail("-h", "--help", "Show this message") do
+    puts opts
+    exit
+  end
+end.parse!
+
+a_records = load_records(options[:a_file], options[:a_cols], options[:sep])
+b_records = load_records(options[:b_file], options[:b_cols], options[:sep])
+
+common = a_records & b_records
+a_only = a_records - common
+b_only = b_records - common
+if options[:count]
+	puts "a: #{a_only.length}"
+	puts "b: #{b_only.length}"
+	puts "c: #{common.length}"
+else
+	if options[:keep] == 'c'
+		print_recs(common, options[:sep])
+	elsif options[:keep] == 'a'
+		print_recs(a_only, options[:sep])
+	elsif options[:keep] == 'b'
+		print_recs(b_only, options[:sep])
+	elsif options[:keep] == 'ab'
+		print_recs(a_only + b_only, options[:sep])
+	end
+end

data/bin/merge_tabular.rb

@@ -0,0 +1,41 @@
+#! /usr/bin/env ruby
+
+parent_table = {}
+table_length = 0
+
+ARGV.each do |file_name|
+	
+	local_length = 0
+	File.open(file_name).each do |line|
+		line.chomp!
+		n_fields = line.count("\t")+1
+		fields = line.split("\t", n_fields).map{|field| 
+			if field == ""
+				'-'
+			else
+				field
+			end
+		}
+		next if fields.count('-') == fields.length #skip blank records
+		id = fields.shift 
+		local_length = fields.length
+		if !parent_table.has_key?(id)
+			parent_table[id] = Array.new(table_length,'-')
+		elsif parent_table[id].length < table_length
+			parent_table[id].concat(Array.new(table_length-parent_table[id].length,'-'))
+		end
+		parent_table[id].concat(fields)
+
+	end
+
+	table_length += local_length
+	parent_table.each do |id, fields|
+		diference = table_length - fields.length
+		fields.concat(Array.new(diference,'-')) if diference > 0
+	end
+
+end
+
+parent_table.each do |id, fields|
+	puts id+"\t"+fields.join("\t")
+end

data/bin/standard_name_replacer.rb

@@ -0,0 +1,59 @@
+#! /usr/bin/env ruby
+
+require 'optparse'
+
+options = {}
+OptionParser.new do |opts|
+	opts.banner = "Usage: #{__FILE__} [options]"
+
+	options[:input_file] = nil
+	opts.on("-i", "--input_file PATH", "Input file ") do |input_file|
+		options[:input_file] = input_file
+	end
+
+	options[:index_file] = nil
+	opts.on("-I", "--index_file PATH", "Index file ") do |item|
+		options[:index_file] = item
+	end
+
+	options[:input_separator] = "\t"
+	opts.on("-s", "--input_separator STRING", "Separator character") do |item|
+		options[:input_separator] = item
+	end
+
+	options[:columns] = [1]
+	opts.on("-c", "--columns STRING", "Columns indexes, comma separated, to perform the ID translations.") do |item|
+		options[:columns] = item.split(','). map{|i| i.to_i - 1}
+	end
+
+	options[:from] = 0
+	opts.on("-f", "--from INTEGER", "Column in index file to take reference value. Default 1. Numeration is 1 based") do |item|
+		options[:from] = item.to_i - 1
+	end
+
+	options[:to] = 1
+	opts.on("-t", "--to INTEGER", "Column in index file to take the value that will be used in substitution. Default 2. Numeration is 1 based") do |item|
+		options[:to] = item.to_i - 1
+	end
+
+end.parse!
+
+#Load index
+index = {}
+File.open(options[:index_file]).read.each_line do |line|
+	line.chomp!
+	fields = line.split("\t")
+	index[fields[options[:from]]] = fields[options[:to]]
+end
+
+#Reemplaza nombres
+File.open(options[:input_file]+'_rep','w') do |f| 
+	File.open(options[:input_file]).each do |line|
+		fields = line.chomp.split(options[:input_separator])
+		options[:columns].each do |col|
+			new_string = index[fields[col]]
+			fields[col] = new_string if !new_string.nil?
+		end
+		f.puts fields.join(options[:input_separator])
+	end
+end 

data/bin/table_header.rb

@@ -0,0 +1,207 @@
+#!/usr/bin/env ruby
+
+require 'find'
+require 'optparse'
+
+#################################################################################################
+## FUNCTIONS
+#################################################################################################
+def parse_cols(col_string)
+    cols = col_string.split(',').map{|col| col.to_i}
+    return cols
+end
+
+def build_pattern(col_filter, keywords)
+    pattern = {}
+    if col_filter.nil? || keywords.nil?
+    else
+        keys_per_col = keywords.split('%')
+        if keys_per_col.length != col_filter.length
+            puts 'Number of keywords not equal to number of filtering columns'
+            Process.exit
+        end
+        col_filter.each_with_index do |col, i|
+            pattern[col] = keys_per_col[i].split('&')
+        end
+    end
+    return pattern
+end
+
+def match(string, key, match_mode)
+    match = false
+    if string.nil?
+        match = false
+    elsif  match_mode == 'i'
+        match = string.include?(key)
+    elsif match_mode == 'c'
+        if string == key
+            match = true
+        end
+    end
+    return match
+end
+
+def filter(header, pattern, search_mode, match_mode, reverse = false)
+    filter = false
+    pattern.each do |col,keys|
+        match = false
+        keys.each do |key|
+            if match(header[col], key, match_mode)
+                match =true
+            end
+        end
+        if match
+            if search_mode == 's'
+                filter = false
+                break
+            end
+        elsif !match && search_mode == 'c'
+            filter = true
+            break
+        elsif !match
+            filter = true
+        end
+    end
+    if reverse
+        filter = !filter
+    end
+    return filter
+end
+
+def check_file(file, names, options, pattern)
+    if file == '-'
+        input = STDIN
+    else
+        input = File.open(file)
+    end
+    relations = relations(options[:column])
+	input.read.each_line do |line|
+		line.chomp!
+		header = line.split(options[:separator])
+        if pattern.nil? || !filter(header, pattern, options[:search_mode], options[:match_mode], options[:reverse])
+            options[:column].each do |col|
+        		if !options[:check_uniq] || !names[relations[col]].include?(header[col]) 
+        			names[relations[col]] << header[col]
+        		end
+            end
+        end
+	end
+	return names
+end
+
+def relations(column)
+    relations = {}
+    column.each_with_index do |col,i|
+        relations[col] = i
+    end
+    return relations
+end
+
+def report(names)
+    n_col = names.length
+    names.first.length.times do |y|
+        n_col.times do |x|
+		string = "#{names[x][y]}"
+		if x < n_col-1
+			string << "\t"
+		end
+            print string
+        end
+        puts
+    end
+end
+
+#################################################################################################
+## INPUT PARSING
+#################################################################################################
+options = {}
+
+optparse = OptionParser.new do |opts|
+        options[:table_file] = nil
+        opts.on( '-t', '--table_file FILE', 'Input tabulated file' ) do |table_file|
+            options[:table_file] = table_file
+        end
+
+        options[:column] = [0]
+        opts.on( '-c', '--column STRING', 'Column/s to show. Format: x,y,z..' ) do |column|            
+                options[:column] = parse_cols(column)
+        end
+
+        options[:col_filter] = nil
+        opts.on( '-f', '--col_filter STRING', 'Select columns where search keywords. Format: x,y,z..' ) do |col_filter|
+                options[:col_filter] =  parse_cols(col_filter)
+        end      
+
+        options[:keywords] = nil
+        opts.on( '-k', '--keywords STRING', 'Keywords for select rows. Format: key1_col1&key2_col1%key1_col2&key2_col2' ) do |keywords|
+                options[:keywords] = keywords
+        end
+
+        options[:search_mode] = 'c'
+        opts.on( '-s', '--search STRING', 'c a match per column, s some match in some column. Default c' ) do |search_mode|
+                options[:search_mode] = search_mode
+        end
+
+        options[:match_mode] = 'i'
+        opts.on( '-m', '--match_mode STRING', 'i string must include the keyword, c for fullmatch. Default i') do |match_mode|
+                options[:match_mode] = match_mode
+        end
+
+        options[:separator] = "\t"
+        opts.on( '-p', '--separator STRING', 'Separator used in fields. Default i') do |separator|
+                options[:separator] = separator
+        end
+
+        options[:reverse] = false
+        opts.on( '-r', '--reverse', 'Select not matching' ) do 
+                options[:reverse] = true
+        end
+
+        options[:uniq] = false
+        opts.on( '-u', '--uniq', 'Delete redundant items' ) do 
+                options[:uniq] = true
+        end
+
+        # Set a banner, displayed at the top of the help screen.
+        opts.banner = "Usage: table_header.rb -t tabulated_file \n\n"
+
+        # This displays the help screen
+        opts.on( '-h', '--help', 'Display this screen' ) do
+                puts opts
+                exit
+        end
+
+end # End opts
+
+# parse options and remove from ARGV
+optparse.parse!
+
+##################################################################################################
+## MAIN
+##################################################################################################
+if options[:table_file].nil?
+	puts 'Tabulated file not specified'
+	Process.exit
+end
+
+pattern = build_pattern(options[:col_filter], options[:keywords])
+
+names = []
+options[:column].length.times do
+    names << []
+end
+if options[:table_file].include?('*')
+	Find.find(Dir.pwd) do |path|
+		if FileTest.directory?(path)
+			next
+		else
+           	if File.basename(path) =~ /#{options[:table_file]}/
+				names = check_file(path, names, options, pattern) 
+			end
+		end
+	end	
+else
+	names = check_file(options[:table_file], names, options, pattern)
+end
+
+report(names)

data/bin/table_linker.rb

@@ -0,0 +1,35 @@
+#!/usr/bin/env ruby
+# Pedro Seoane Zonjic 13-12-2012
+# Toma la informacion extraida de un archivo tabulado (donde la primera columna es el idetificador) en base a una lista de identificadores proporcionada
+# la informacion se guarda en el archivo de salida
+
+if ARGV.size < 3
+	puts "Usage: table_linker.rb file_table file_table output_file_name"
+	Process.exit
+end
+
+drop_line = false
+if !ARGV[3].nil?
+	drop_line = true
+end
+hash_info={}
+
+#Cargar tabla de informacion en hash en forma {identificador => campos de informacion}
+File.open(ARGV[0],'r').each do |line|
+	fields=line.chomp.split("\t",2)
+	hash_info[fields.first]=fields.last
+end
+
+save_info=File.open(ARGV[2],'w') #Crea archivo para guardar la informacion
+File.open(ARGV[1],'r').each do |line|
+	line.chomp!
+	fields = line.split("\t")
+	id = fields.first
+	info_id=hash_info[id]
+	if !info_id.nil?
+		save_info.puts line+"\t"+info_id
+	else
+		save_info.puts line if !drop_line
+	end
+end
+save_info.close

data/cmdtabs.gemspec

@@ -0,0 +1,37 @@
+# frozen_string_literal: true
+
+require_relative "lib/cmdtabs/version"
+
+Gem::Specification.new do |spec|
+  spec.name          = "cmdtabs"
+  spec.version       = Cmdtabs::VERSION
+  spec.authors       = ["seoanezonjic"]
+  spec.email         = ["seoanezonjic@hotmail.com"]
+
+  spec.summary       = "Gem to manipulate text tables in cmd"
+  spec.description   = "Toolset to merge, colapse tables rename field contents, etc "
+  spec.homepage      = "https://github.com/seoanezonjic/cmdtabs"
+  spec.license       = "MIT"
+  spec.required_ruby_version = Gem::Requirement.new(">= 2.4.0")
+
+  #spec.metadata["allowed_push_host"] = "TODO: Set to 'http://mygemserver.com'"
+
+  spec.metadata["homepage_uri"] = spec.homepage
+  spec.metadata["source_code_uri"] = spec.homepage
+  #spec.metadata["changelog_uri"] = "TODO: Put your gem's CHANGELOG.md URL here."
+
+  # Specify which files should be added to the gem when it is released.
+  # The `git ls-files -z` loads the files in the RubyGem that have been added into git.
+  spec.files = Dir.chdir(File.expand_path(__dir__)) do
+    `git ls-files -z`.split("\x0").reject { |f| f.match(%r{\A(?:test|spec|features)/}) }
+  end
+  spec.bindir        = "bin"
+  spec.executables   = spec.files.grep(%r{\Abin/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  # Uncomment to register a new dependency of your gem
+  # spec.add_dependency "example-gem", "~> 1.0"
+
+  # For more information and examples about making a new gem, checkout our
+  # guide at: https://bundler.io/guides/creating_gem.html
+end

data/lib/cmdtabs/version.rb

@@ -0,0 +1,5 @@
+# frozen_string_literal: true
+
+module Cmdtabs
+  VERSION = "0.1.0"
+end

data/lib/cmdtabs.rb

@@ -0,0 +1,8 @@
+# frozen_string_literal: true
+
+require_relative "cmdtabs/version"
+
+module Cmdtabs
+  class Error < StandardError; end
+  # Your code goes here...
+end

metadata

@@ -0,0 +1,73 @@
+--- !ruby/object:Gem::Specification
+name: cmdtabs
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- seoanezonjic
+autorequire:
+bindir: bin
+cert_chain: []
+date: 2022-03-03 00:00:00.000000000 Z
+dependencies: []
+description: 'Toolset to merge, colapse tables rename field contents, etc '
+email:
+- seoanezonjic@hotmail.com
+executables:
+- aggregate_column_data.rb
+- create_metric_table.rb
+- desaggregate_column_data.rb
+- intersect_columns.rb
+- merge_tabular.rb
+- standard_name_replacer.rb
+- table_header.rb
+- table_linker.rb
+extensions: []
+extra_rdoc_files: []
+files:
+- ".github/workflows/main.yml"
+- ".gitignore"
+- ".rspec"
+- ".rubocop.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/aggregate_column_data.rb
+- bin/create_metric_table.rb
+- bin/desaggregate_column_data.rb
+- bin/intersect_columns.rb
+- bin/merge_tabular.rb
+- bin/standard_name_replacer.rb
+- bin/table_header.rb
+- bin/table_linker.rb
+- cmdtabs.gemspec
+- lib/cmdtabs.rb
+- lib/cmdtabs/version.rb
+homepage: https://github.com/seoanezonjic/cmdtabs
+licenses:
+- MIT
+metadata:
+  homepage_uri: https://github.com/seoanezonjic/cmdtabs
+  source_code_uri: https://github.com/seoanezonjic/cmdtabs
+post_install_message:
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: 2.4.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 3.2.15
+signing_key:
+specification_version: 4
+summary: Gem to manipulate text tables in cmd
+test_files: []