cdo 1.5.0 → 1.5.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 9f41ea1d14a2640c9c93ca33eaeacb7860f39fd723e857f740dc366bc284f020
-  data.tar.gz: 2c5fb959227006a1659c7c6fa97936d85ddd5b62fc1e9c0459e9029c043c1819
+  metadata.gz: 92bf2cb62627b00641b7263844f46513cbf84a9bd43b462f97b7a4a412489bf2
+  data.tar.gz: 0a57b6e420d67047b61d0581678cf92e904f17e19ed29a1bcc55ca111a8e1a35
 SHA512:
-  metadata.gz: c1fea4d7b5c61a989b6b7ecab617604ab4977f771b072b8441149bd141a4fa95e0cfc5cc1e520d34f3c644c4d21fe15092ac332719ed526a03fc3edd9be657d5
-  data.tar.gz: 7e687fc0d277d2123eb815012ad023d38480b631e0414f33503928d09e39fc0dc12a3b22e2d259bd23d0343d668c3d2a8d5b781ea200c9d65d66218022b6cab1
+  metadata.gz: 2eecac236c7806ac9ae1da7efa2af5f30eaa360e557c016c09712d22905f0f1a5b6f42f5df7ee1dcdb6716b50d138346be19ad7b283db68e3e27e480f4524a29
+  data.tar.gz: 01db549f6a5c201f84f1e2a8c0c126c52d8e6ab684c0d57ee7346e4c84a1fee5c084f99a204d14bc5c07cddaf944cb8c673c4f010f3ec9e1b9a5ee1f1ac34a63

data/gemspec

@@ -3,22 +3,30 @@ $:.unshift File.join(File.dirname(__FILE__),"..","lib")
 
 spec = Gem::Specification.new do |s|
   s.name              = "cdo"
-  s.version           = '1.5.0'
+  s.version           = '1.5.1'
   s.platform          = Gem::Platform::RUBY
-  s.files             = ["lib/cdo.rb","gemspec","LICENSE"]
+  s.files             = ["lib/cdo.rb","gemspec"]
   s.test_file         = "test/test_cdo.rb"
-  s.description       = "Easy access to the Climate Data operators"
-  s.summary           = "Easy access to the Climate Data operators"
+  s.description       = "Easy access to the Climate Data operators of MPI (https://code.mpimet.mpg.de/projects/cdo)"
+  s.summary           = "Easy access to the Climate Data operators "
   s.author            = "Ralf Mueller"
   s.email             = "stark.dreamdetective@gmail.com"
   s.homepage          = "https://code.zmaw.de/projects/cdo/wiki/Cdo%7Brbpy%7D"
-  s.license           = "GPLv2"
-  s.required_ruby_version = ">= 1.9"
-  s.add_development_dependency('unifiedPlot')
-  s.add_development_dependency('minitest')
-  s.add_development_dependency('facets')
-  s.add_development_dependency('colorize')
-  s.add_development_dependency('rake')
+  s.license           = "BSD-3-Clause"
+  s.required_ruby_version = '>= 2.0'
+  s.add_development_dependency('unifiedPlot', '~> 0', '>= 0.0.6')
+  s.add_development_dependency('minitest', '~> 5', '>= 5.10')
+  s.add_development_dependency('facets', '~> 3', '>= 3.0')
+  s.add_development_dependency('colorize', '~> 0.8', '>= 0.8')
+  s.add_development_dependency('rake', '~> 10', '>= 10')
+  s.metadata = {
+    "bug_tracker_uri"   => "https://github.com/Try2Code/cdo-bindings/issues",
+    "changelog_uri"     => "https://github.com/Try2Code/cdo-bindings#changelog",
+    "documentation_uri" => "https://www.rubydoc.info/gems/cdo/Cdo",
+    "homepage_uri"      => "https://github.com/Try2Code/cdo-bindings",
+    "source_code_uri"   => "https://github.com/Try2Code/cdo-bindings",
+    "wiki_uri"          => "https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo%7Brbpy%7D"
+  }
 end
 
 # vim:ft=ruby

data/lib/cdo.rb

@@ -9,6 +9,31 @@ class Hash
   alias :include? :has_key?
 end
 
+# Copyright 2011-2019 Ralf Mueller, ralf.mueller@dkrz.de
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice,
+#    this list of conditions and the following disclaimer.
+# 2. Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution.
+# 3. Neither the name of the copyright holder nor the names of its contributors
+#    may be used to endorse or promote products derived from this software without
+#    specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
 
 class Cdo
 
@@ -64,7 +89,7 @@ class Cdo
     @tempStore              = CdoTempfileStore.new(tempdir)
     @logging                = logging
     @logFile                = logFile
-    @logger                 = Logger.new(@logFile,'a')
+    @logger                 = Logger.new(@logFile,'daily')
     @logger.level           = Logger::INFO
 
     @config                 = getFeatures
@@ -235,14 +260,13 @@ class Cdo
            operatorParameters,
            input:         nil,
            output:        nil,
-           options:       nil,
+           options:       '',
            returnCdf:     false,
            force:         nil,
            returnArray:   nil,
            returnMaArray: nil,
            env:           nil,
            autoSplit:     nil)
-    options = options.to_s
 
     # switch netcdf output if data of filehandles are requested as output
     options << ' -f nc' if ( \
@@ -346,7 +370,7 @@ class Cdo
     # mark calls for operators without output files
     io[:output] = $stdout if @noOutputOperators.include?(operatorName)
 
-    _run(operatorName,operatorParameters,io)
+    _run(operatorName,operatorParameters,**io)
   end
 
   # load the netcdf bindings

data/test/test_cdo.rb

@@ -16,6 +16,8 @@ class TestCdo < Minitest::Test
   @@maintainermode = ENV.has_key?('MAINTAINERMODE')
   @@debug          = ENV.has_key?('DEBUG')
 
+  parallelize_me! unless @@debug
+
   def setup
     @cdo = Cdo.new
     @tempStore = CdoTempfileStore.new
@@ -322,7 +324,16 @@ class TestCdo < Minitest::Test
     }
   end
 
+  def test_seqVSfor
+    if @cdo.version < '1.9.7' then
+      @cdo.for(0,1)
+    else
+      @cdo.seq(0,1)
+    end
+
+  end
   def test_operators_with_multiple_output_files
+    varname = ( @cdo.version < '1.9.7' ) ? 'for' : 'seq'
     assert_equal(1,@cdo.operators['topo'],'wrong output counter for "topo"')
     assert_equal(0,@cdo.operators['sinfo'],'wrong output counter for "sinfo"')
     assert_equal(0,@cdo.operators['ngridpoints'],'wrong output counter for "sinfo"') if @cdo.version > '1.6.4'
@@ -332,15 +343,15 @@ class TestCdo < Minitest::Test
     # create input for eof
     #
     # check automatic generation ot two tempfiles
-    aFile, bFile = @cdo.trend(input: "-addc,7 -mulc,44 -for,1,100")
+    aFile, bFile = @cdo.trend(input: "-addc,7 -mulc,44 -#{varname},1,100")
     assert_equal(51.0,@cdo.outputkey('value',input: aFile)[-1].to_f)
     assert_equal(44.0,@cdo.outputkey('value',input: bFile)[-1].to_f)
     # check usage of 'returnCdf' with these operators
-    aFile, bFile = @cdo.trend(input: "-addc,7 -mulc,44 -for,1,100",returnCdf: true)
-    assert_equal(51.0, aFile.var('for').get.flatten[0],"got wrong value from cdf handle")
-    assert_equal(44.0, bFile.var('for').get.flatten[0],"got wrong value from cdf handle")
+    aFile, bFile = @cdo.trend(input: "-addc,7 -mulc,44 -#{varname},1,100",returnCdf: true)
+    assert_equal(51.0, aFile.var(varname).get.flatten[0],"got wrong value from cdf handle")
+    assert_equal(44.0, bFile.var(varname).get.flatten[0],"got wrong value from cdf handle")
 
-    avar = @cdo.trend(input: "-addc,7 -mulc,44 -for,1,100",returnArray: 'for').flatten[0]
+    avar = @cdo.trend(input: "-addc,7 -mulc,44 -#{varname},1,100",returnArray: varname).flatten[0]
     assert_equal(51.0, avar,"got wrong value from narray")
   end
   def test_tempdir
@@ -434,11 +445,12 @@ class TestCdo < Minitest::Test
     end
   end
   def test_readCdf
-    input = "-settunits,days  -setyear,2000 -for,1,4"
+    varname = ( @cdo.version < '1.9.7' ) ? 'for' : 'seq'
+    input = "-settunits,days  -setyear,2000 -#{varname},1,4"
     cdfFile = @cdo.copy(:options =>"-f nc",:input=>input)
     if @cdo.hasNetcdf then
       cdf = @cdo.readCdf(cdfFile)
-      assert_empty(['lon','lat','for','time'] - cdf.var_names)
+      assert_empty(['lon','lat',varname,'time'] - cdf.var_names)
     else
       assert_raises LoadError do
         cdf = @cdo.readCdf(cdfFile)
@@ -503,7 +515,7 @@ class TestCdo < Minitest::Test
   def test_log
     cmd = '-fldmean -mul -random,r20x20 -topo,r20x20'
     #  logging without a real file
-    @cdo = Cdo.new(                    returnNilOnError: true)
+    @cdo = Cdo.new(returnNilOnError: true)
     @cdo.debug = false
     @cdo.logging = true
     @cdo.topo
@@ -520,6 +532,27 @@ class TestCdo < Minitest::Test
     @cdo.sinfov(input: cmd)
     puts @cdo.showLog
   end
+  def test_proj
+    myTempfile=@tempStore.newFile
+    File.open(myTempfile,'w') {|f|
+    f << '
+gridtype = projection
+xsize     = 10
+ysize     = 10
+xunits   = "meter"
+yunits   = "meter"
+xfirst    = -638000
+xinc      = 100
+yfirst    = -3349350
+yinc      = 100
+grid_mapping = crs
+grid_mapping_name = polar_stereographic
+proj_params = "+proj=stere +lon_0=-45 +lat_ts=70 +lat_0=90 +x_0=0 +y_0=0"
+'
+    }
+    data = @cdo.remapnn(myTempfile,input: '-topo',returnArray: 'topo', options: '-f nc')
+    assert_equal(-3190.0,data.flatten[0])
+  end
   if @@maintainermode  then
     require 'unifiedPlot'
 

metadata

@@ -1,99 +1,134 @@
 --- !ruby/object:Gem::Specification
 name: cdo
 version: !ruby/object:Gem::Version
-  version: 1.5.0
+  version: 1.5.1
 platform: ruby
 authors:
 - Ralf Mueller
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-02-14 00:00:00.000000000 Z
+date: 2020-05-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: unifiedPlot
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.0.6
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.0.6
 - !ruby/object:Gem::Dependency
   name: minitest
   requirement: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '5'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '5.10'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '5'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '5.10'
 - !ruby/object:Gem::Dependency
   name: facets
   requirement: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '3.0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '3.0'
 - !ruby/object:Gem::Dependency
   name: colorize
   requirement: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.8'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.8'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.8'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.8'
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '10'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
-description: Easy access to the Climate Data operators
+        version: '10'
+description: Easy access to the Climate Data operators of MPI (https://code.mpimet.mpg.de/projects/cdo)
 email: stark.dreamdetective@gmail.com
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
-- LICENSE
 - gemspec
 - lib/cdo.rb
 - test/test_cdo.rb
 homepage: https://code.zmaw.de/projects/cdo/wiki/Cdo%7Brbpy%7D
 licenses:
-- GPLv2
-metadata: {}
+- BSD-3-Clause
+metadata:
+  bug_tracker_uri: https://github.com/Try2Code/cdo-bindings/issues
+  changelog_uri: https://github.com/Try2Code/cdo-bindings#changelog
+  documentation_uri: https://www.rubydoc.info/gems/cdo/Cdo
+  homepage_uri: https://github.com/Try2Code/cdo-bindings
+  source_code_uri: https://github.com/Try2Code/cdo-bindings
+  wiki_uri: https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo%7Brbpy%7D
 post_install_message: 
 rdoc_options: []
 require_paths:
@@ -102,14 +137,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '1.9'
+      version: '2.0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.2
+rubygems_version: 3.1.2
 signing_key: 
 specification_version: 4
 summary: Easy access to the Climate Data operators

data/LICENSE

@@ -1,280 +0,0 @@
-		    GNU GENERAL PUBLIC LICENSE
-		       Version 2, June 1991
-
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.
-     59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
-			    Preamble
-
-  The licenses for most software are designed to take away your
-freedom to share and change it.  By contrast, the GNU General Public
-License is intended to guarantee your freedom to share and change free
-software--to make sure the software is free for all its users.  This
-General Public License applies to most of the Free Software
-Foundation's software and to any other program whose authors commit to
-using it.  (Some other Free Software Foundation software is covered by
-the GNU Library General Public License instead.)  You can apply it to
-your programs, too.
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-distribute the Program or its derivative works.  These actions are
-prohibited by law if you do not accept this License.  Therefore, by
-modifying or distributing the Program (or any work based on the
-Program), you indicate your acceptance of this License to do so, and
-all its terms and conditions for copying, distributing or modifying
-the Program or works based on it.
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-  6. Each time you redistribute the Program (or any work based on the
-Program), the recipient automatically receives a license from the
-original licensor to copy, distribute or modify the Program subject to
-these terms and conditions.  You may not impose any further
-restrictions on the recipients' exercise of the rights granted herein.
-You are not responsible for enforcing compliance by third parties to
-this License.
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-  7. If, as a consequence of a court judgment or allegation of patent
-infringement or for any other reason (not limited to patent issues),
-conditions are imposed on you (whether by court order, agreement or
-otherwise) that contradict the conditions of this License, they do not
-excuse you from the conditions of this License.  If you cannot
-distribute so as to satisfy simultaneously your obligations under this
-License and any other pertinent obligations, then as a consequence you
-may not distribute the Program at all.  For example, if a patent
-license would not permit royalty-free redistribution of the Program by
-all those who receive copies directly or indirectly through you, then
-the only way you could satisfy both it and this License would be to
-refrain entirely from distribution of the Program.
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-If any portion of this section is held invalid or unenforceable under
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-It is not the purpose of this section to induce you to infringe any
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-This section is intended to make thoroughly clear what is believed to
-be a consequence of the rest of this License.
-
-  8. If the distribution and/or use of the Program is restricted in
-certain countries either by patents or by copyrighted interfaces, the
-original copyright holder who places the Program under this License
-may add an explicit geographical distribution limitation excluding
-those countries, so that distribution is permitted only in or among
-countries not thus excluded.  In such case, this License incorporates
-the limitation as if written in the body of this License.
-
-  9. The Free Software Foundation may publish revised and/or new versions
-of the General Public License from time to time.  Such new versions will
-be similar in spirit to the present version, but may differ in detail to
-address new problems or concerns.
-
-Each version is given a distinguishing version number.  If the Program
-specifies a version number of this License which applies to it and "any
-later version", you have the option of following the terms and conditions
-either of that version or of any later version published by the Free
-Software Foundation.  If the Program does not specify a version number of
-this License, you may choose any version ever published by the Free Software
-Foundation.
-
-  10. If you wish to incorporate parts of the Program into other free
-programs whose distribution conditions are different, write to the author
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-Software Foundation, write to the Free Software Foundation; we sometimes
-make exceptions for this.  Our decision will be guided by the two goals
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-of promoting the sharing and reuse of software generally.
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-			    NO WARRANTY
-
-  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
-OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
-REPAIR OR CORRECTION.
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-  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
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-TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
-PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGES.
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-		     END OF TERMS AND CONDITIONS