canql 6.0.0 → 6.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +8 -0
- data/lib/canql/grammars/anomaly.treetop +1 -1
- data/lib/canql/grammars/events.treetop +1 -1
- data/lib/canql/grammars/genetic_test.treetop +1 -1
- data/lib/canql/grammars/main.treetop +3 -3
- data/lib/canql/grammars/patient.treetop +5 -5
- data/lib/canql/grammars/test_result.treetop +1 -1
- data/lib/canql/grammars/test_result_group.treetop +5 -5
- data/lib/canql/nodes/age.rb +1 -1
- data/lib/canql/nodes/anomaly.rb +11 -21
- data/lib/canql/nodes/dates.rb +6 -6
- data/lib/canql/nodes/e_base_records.rb +1 -1
- data/lib/canql/nodes/events.rb +2 -2
- data/lib/canql/nodes/genetic_test.rb +4 -5
- data/lib/canql/nodes/main.rb +2 -2
- data/lib/canql/nodes/patient.rb +3 -3
- data/lib/canql/nodes/patient_events.rb +3 -3
- data/lib/canql/nodes/perinatal_hospital.rb +1 -1
- data/lib/canql/nodes/registry.rb +1 -1
- data/lib/canql/nodes/test_result.rb +4 -4
- data/lib/canql/nodes/test_result_group.rb +10 -10
- data/lib/canql/treetop/extensions.rb +5 -4
- data/lib/canql/version.rb +1 -1
- metadata +2 -134
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 360922ab34dbdcb72c3cad8ba6ae105044534b8955c77237dcc90789e610caca
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data.tar.gz: 7b8f9550fcf004647b8831cbc401c417a34c81e3c27dbd7446725acca012b3ac
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SHA512:
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metadata.gz:
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metadata.gz: b7c4eefb874fd4f0dd5b9ad0a5cdaab212d595d5ddd46a60f9f0b02704309597bda66b39edaf2abdf9d488e6676c9b81e1e09660700bedd3e744c24dd45fc481
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data.tar.gz: 33a6c07541a128f31393d219246bf1e2135ac25ad30f84926232a1b86574ccf88ba159ef1b5798bb5a8e8d4e05ef279aa330c82c7779ff36230b7ef553297afa
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data/CHANGELOG.md
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## [Unreleased]
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## 6.0.1 / 2024-10-14
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### Fixed
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* Code only misspelling of existence
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* Code only misspelling of modifier
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* Code only misspelling of number
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* Code only misspelling of acceptance
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* Moved development dependencies to Gem files
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## 6.0.0 / 2024-09-30
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### Changed
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* Changed the hes event filter to align with other new event filter
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@@ -1,7 +1,7 @@
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module Canql
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grammar Anomaly
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rule anomalies
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and_keyword?
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and_keyword? existence_modifier:anomalies_no_keyword? status_type:anomaly_status? natal_period:anomalies_natal_period? screening_status_type:anomaly_screening_status? code_data:(space first:anomalies_icd_code rest:more_anomalies_icd_codes* word_break)? anomalies_keyword <Nodes::Anomaly::WithCondition>
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end
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rule anomalies_no_keyword
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module Canql
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grammar Events
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rule events
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and_keyword?
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and_keyword? existence_modifier:events_no_keyword? events_name event_object_keyword <Nodes::Events::WithCondition>
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end
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rule events_no_keyword
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module Canql
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grammar GeneticTest
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rule genetic_tests
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and_keyword?
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and_keyword? existence_modifier:genetic_tests_no_keyword? genetic_tests_keyword <Nodes::GeneticTest::WithCondition>
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end
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rule genetic_tests_no_keyword
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@@ -92,7 +92,7 @@ grammar Canql
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space 'and' word_break
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end
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-
rule
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rule existence_keyword
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space ('missing' / ('field' 's'?) / 'populated') word_break
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end
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@@ -130,12 +130,12 @@ grammar Canql
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rule case_with_conditions
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anomalies / genetic_tests / test_results / perinatal_hospital /
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-
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+
case_field_existence / test_acceptance_existence / test_result_groups /
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mother_conditions / action_or_ebr / events
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end
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rule patient_with_conditions
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-
anomalies / genetic_tests / test_results /
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anomalies / genetic_tests / test_results / patient_field_existence /
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action_or_ebr / events
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end
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end
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@@ -30,12 +30,12 @@ module Canql
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expected_keyword fuzzy_date <Nodes::Patient::ExpectedDateRangeNode>
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end
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rule
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and_keyword?
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rule case_field_existence
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and_keyword? field_existence_modifier:existence_keyword patient_field_list:case_field_list <Nodes::Patient::FieldExists>
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end
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rule
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and_keyword?
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rule patient_field_existence
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and_keyword? field_existence_modifier:existence_keyword patient_field_list:patient_field_list <Nodes::Patient::FieldExists>
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end
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rule patient_fields_keyword
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end
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rule mother_with_conditions
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-
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patient_field_existence / action_or_ebr
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end
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end
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end
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@@ -1,7 +1,7 @@
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module Canql
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grammar TestResult
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rule test_results
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and_keyword?
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and_keyword? existence_modifier:test_result_no_keyword? natal_period:test_result_natal_period? test_results_keyword <Nodes::TestResult::WithCondition>
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end
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rule test_result_no_keyword
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module Canql
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grammar TestResultGroup
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rule test_result_groups
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and_keyword?
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and_keyword? existence_modifier:test_result_group_existence_keyword group:test_result_group_names <Nodes::TestResultGroup::WithCondition>
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end
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-
rule
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rule test_result_group_existence_keyword
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# If in furture the reverse is needed use 'supplied require'
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space ('missing required' / 'missing' / 'supplied required' / 'supplied') word_break
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end
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space ('screening' / 'anomaly scan' / 'fetal medicine' / 'dating') word_break
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end
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rule
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and_keyword?
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rule test_acceptance_existence
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and_keyword? existence_modifier:test_acceptance_existence_keyword acceptance:test_acceptance_names <Nodes::TestAcceptanceExistence::WithCondition>
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end
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-
rule
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rule test_acceptance_existence_keyword
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space ('missing required' / 'missing' ) word_break
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end
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data/lib/canql/nodes/age.rb
CHANGED
data/lib/canql/nodes/anomaly.rb
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# frozen_string_literal: true
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module Anomaly
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module WithCondition
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end
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def to_anomaly
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anomaly_hash = { 'exists' =>
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anomaly_hash = { 'exists' => existence_filter }
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anomaly_hash['type'] = anomaly_type_filter if anomaly_type.present?
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anomaly_hash['status'] = anomaly_status_type_filter if anomaly_status_type.present?
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if anomaly_screening_status_type.present?
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def code_filters(anomaly_hash)
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anomaly_hash['icd_codes'] = code_filter[:icd_code] if code_filter[:icd_code].present?
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-
if code_filter[:code_group].present?
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-
anomaly_hash['code_groups'] = code_filter[:code_group]
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-
end
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anomaly_hash['code_groups'] = code_filter[:code_group] if code_filter[:code_group].present?
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return if code_filter[:fasp_rating].blank?
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anomaly_hash['fasp_rating'] = code_filter[:fasp_rating]
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end
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def
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{ Canql::EQUALS =>
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def existence_filter
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{ Canql::EQUALS => existence_modifier.text_value.strip != 'no' }
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end
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def anomaly_type_filter
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clean_code_array(code_array)
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code_filters = {}
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if code_array[:icd_code].any?
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-
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-
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if code_array[:code_group].any?
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code_filters[:code_group] = { Canql::EQUALS => code_array[:code_group] }
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end
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if code_array[:fasp_rating].any?
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code_filters[:fasp_rating] = { Canql::EQUALS => code_array[:fasp_rating] }
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-
end
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code_filters[:icd_code] = { Canql::BEGINS => code_array[:icd_code] } if code_array[:icd_code].any?
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code_filters[:code_group] = { Canql::EQUALS => code_array[:code_group] } if code_array[:code_group].any?
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code_filters[:fasp_rating] = { Canql::EQUALS => code_array[:fasp_rating] } if code_array[:fasp_rating].any?
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code_filters
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end
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def clean_code_array(code_array)
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code_array[:icd_code].flatten!
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code_array[:icd_code].
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code_array[:icd_code].compact_blank!
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code_array[:code_group].flatten!
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code_array[:code_group].
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code_array[:code_group].compact_blank!
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code_array[:fasp_rating].flatten!
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code_array[:fasp_rating].
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code_array[:fasp_rating].compact_blank!
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end
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def code_filter
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data/lib/canql/nodes/dates.rb
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require 'chronic'
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require 'ndr_support/daterange'
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module FuzzyDateNode
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delegate :to_daterange, to: :date
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module YearQuarterNode
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def to_daterange
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quarter = text_value[0..1]
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year = text_value[3
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year = text_value[3..]
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quarters = {
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q1: "01-04-#{year}",
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q2: "01-07-#{year}",
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q3: "01-10-#{year}",
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q4: "01-01-#{year.to_i + 1}"
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}
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Daterange.new(quarters[quarter.to_sym].to_date,
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quarters[quarter.to_sym].to_date + 3.months - 1.day)
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data/lib/canql/nodes/events.rb
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# frozen_string_literal: true
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module Events
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module WithCondition
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end
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def existence_filter
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{ Canql::EQUALS =>
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{ Canql::EQUALS => existence_modifier.text_value.strip != 'no' }
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end
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end
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end
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# frozen_string_literal: true
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module GeneticTest
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module WithCondition
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def to_genetic_test
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genetic_test_hash
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{ 'exists' => existence_filter }
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end
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def
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{ Canql::EQUALS =>
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def existence_filter
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{ Canql::EQUALS => existence_modifier.text_value.strip != 'no' }
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end
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end
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end
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data/lib/canql/nodes/main.rb
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# require 'active_support/core_ext/object/blank'
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module RecordCountNode
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def meta_data_item
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end
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end
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module Canql
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module Canql # :nodoc: all
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module Nodes
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# Returns a filter detailing the require result type (cases or patients)
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module SubjectNode
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data/lib/canql/nodes/patient.rb
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field_names = actual_field_names(
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patient_field_list.text_values_for_marker(:patient_field_name), subject.to_sym
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)
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-
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-
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{ "#{subject}.#{
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modifier = field_existence_modifier.text_value.strip
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existence = modifier == 'missing' ? 'fields_missing' : 'fields_populated'
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{ "#{subject}.#{existence}" => { Canql::EQUALS => field_names } }
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end
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def actual_field_names(fields, subject)
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# frozen_string_literal: true
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module PatientEvents
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module WithCondition
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def to_events
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event_name = event_type_name
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event_name = event_type_name
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{ "#{event_name}_event" => existence_filter }
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end
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end
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def existence_filter
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{ Canql::EQUALS =>
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{ Canql::EQUALS => existence_modifier.text_value.strip != 'no' }
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end
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end
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end
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data/lib/canql/nodes/registry.rb
CHANGED
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# frozen_string_literal: true
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module Canql
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module Canql # :nodoc: all
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module Nodes
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module TestResult
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module WithCondition
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end
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def to_test_result
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test_result_hash = { 'exists' =>
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test_result_hash = { 'exists' => existence_filter }
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test_result_hash['type'] = test_result_type_filter if test_result_type.present?
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test_result_hash
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15
|
end
|
16
16
|
|
17
|
-
def
|
18
|
-
{ Canql::EQUALS =>
|
17
|
+
def existence_filter
|
18
|
+
{ Canql::EQUALS => existence_modifier.text_value.strip != 'no' }
|
19
19
|
end
|
20
20
|
|
21
21
|
def test_result_type_filter
|
@@ -1,6 +1,6 @@
|
|
1
1
|
# frozen_string_literal: true
|
2
2
|
|
3
|
-
module Canql
|
3
|
+
module Canql # :nodoc: all
|
4
4
|
module Nodes
|
5
5
|
module TestResultGroup
|
6
6
|
module WithCondition
|
@@ -9,16 +9,16 @@ module Canql #:nodoc: all
|
|
9
9
|
end
|
10
10
|
|
11
11
|
def to_test_result_group
|
12
|
-
test_result_group_hash = { 'exists' =>
|
12
|
+
test_result_group_hash = { 'exists' => existence_filter }
|
13
13
|
test_result_group_hash['required'] = requirement_filter
|
14
14
|
test_result_group_hash['group'] = test_result_group_filter if test_result_group.present?
|
15
15
|
test_result_group_hash
|
16
16
|
end
|
17
17
|
|
18
|
-
def
|
18
|
+
def existence_filter
|
19
19
|
{
|
20
20
|
Canql::EQUALS => ['supplied required', 'supplied'].include?(
|
21
|
-
|
21
|
+
existence_modifier.text_value.strip
|
22
22
|
)
|
23
23
|
}
|
24
24
|
end
|
@@ -26,7 +26,7 @@ module Canql #:nodoc: all
|
|
26
26
|
def requirement_filter
|
27
27
|
{
|
28
28
|
Canql::EQUALS => ['supplied required', 'missing required'].include?(
|
29
|
-
|
29
|
+
existence_modifier.text_value.strip
|
30
30
|
)
|
31
31
|
}
|
32
32
|
end
|
@@ -37,23 +37,23 @@ module Canql #:nodoc: all
|
|
37
37
|
end
|
38
38
|
end
|
39
39
|
|
40
|
-
module
|
40
|
+
module TestAcceptanceExistence
|
41
41
|
module WithCondition
|
42
42
|
def test_acceptance
|
43
43
|
acceptance.text_value.strip.parameterize.underscore
|
44
44
|
end
|
45
45
|
|
46
46
|
def to_test_acceptance
|
47
|
-
test_acceptance_hash = { 'exists' =>
|
47
|
+
test_acceptance_hash = { 'exists' => existence_filter }
|
48
48
|
test_acceptance_hash['required'] = requirement_filter
|
49
49
|
test_acceptance_hash['acceptance'] = test_acceptance_filter if test_acceptance.present?
|
50
50
|
test_acceptance_hash
|
51
51
|
end
|
52
52
|
|
53
|
-
def
|
53
|
+
def existence_filter
|
54
54
|
{
|
55
55
|
Canql::EQUALS => ['supplied required', 'supplied'].include?(
|
56
|
-
|
56
|
+
existence_modifier.text_value.strip
|
57
57
|
)
|
58
58
|
}
|
59
59
|
end
|
@@ -61,7 +61,7 @@ module Canql #:nodoc: all
|
|
61
61
|
def requirement_filter
|
62
62
|
{
|
63
63
|
Canql::EQUALS => ['supplied required', 'missing required'].include?(
|
64
|
-
|
64
|
+
existence_modifier.text_value.strip
|
65
65
|
)
|
66
66
|
}
|
67
67
|
end
|
@@ -26,7 +26,8 @@ module Treetop
|
|
26
26
|
|
27
27
|
def reverse_scan_for_marker(marker)
|
28
28
|
marker_value = reverse_marker_scanner(self, marker)
|
29
|
-
return if marker_value.
|
29
|
+
return if marker_value.blank?
|
30
|
+
|
30
31
|
marker_value
|
31
32
|
end
|
32
33
|
|
@@ -34,6 +35,7 @@ module Treetop
|
|
34
35
|
|
35
36
|
def text_values_for_marker_scanner(root, marker, list)
|
36
37
|
return if root.elements.nil?
|
38
|
+
|
37
39
|
root.elements.each do |e|
|
38
40
|
list << e.send(marker).text_value if e.respond_to?(marker)
|
39
41
|
text_values_for_marker_scanner(e, marker, list)
|
@@ -43,10 +45,9 @@ module Treetop
|
|
43
45
|
|
44
46
|
def reverse_marker_scanner(root, marker)
|
45
47
|
return if root.nil? || root.elements.nil?
|
48
|
+
|
46
49
|
marker_value = root.send(marker).text_value if root.respond_to?(marker)
|
47
|
-
|
48
|
-
marker_value = reverse_marker_scanner(root.parent, marker)
|
49
|
-
end
|
50
|
+
marker_value = reverse_marker_scanner(root.parent, marker) if marker_value.blank?
|
50
51
|
marker_value
|
51
52
|
end
|
52
53
|
end
|
data/lib/canql/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: canql
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 6.0.
|
4
|
+
version: 6.0.1
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- NHSD NDRS Development Team
|
8
8
|
autorequire:
|
9
9
|
bindir: exe
|
10
10
|
cert_chain: []
|
11
|
-
date: 2024-
|
11
|
+
date: 2024-10-16 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: chronic
|
@@ -78,138 +78,6 @@ dependencies:
|
|
78
78
|
- - ">="
|
79
79
|
- !ruby/object:Gem::Version
|
80
80
|
version: 1.4.10
|
81
|
-
- !ruby/object:Gem::Dependency
|
82
|
-
name: bundler
|
83
|
-
requirement: !ruby/object:Gem::Requirement
|
84
|
-
requirements:
|
85
|
-
- - ">="
|
86
|
-
- !ruby/object:Gem::Version
|
87
|
-
version: '0'
|
88
|
-
type: :development
|
89
|
-
prerelease: false
|
90
|
-
version_requirements: !ruby/object:Gem::Requirement
|
91
|
-
requirements:
|
92
|
-
- - ">="
|
93
|
-
- !ruby/object:Gem::Version
|
94
|
-
version: '0'
|
95
|
-
- !ruby/object:Gem::Dependency
|
96
|
-
name: guard
|
97
|
-
requirement: !ruby/object:Gem::Requirement
|
98
|
-
requirements:
|
99
|
-
- - ">="
|
100
|
-
- !ruby/object:Gem::Version
|
101
|
-
version: '0'
|
102
|
-
type: :development
|
103
|
-
prerelease: false
|
104
|
-
version_requirements: !ruby/object:Gem::Requirement
|
105
|
-
requirements:
|
106
|
-
- - ">="
|
107
|
-
- !ruby/object:Gem::Version
|
108
|
-
version: '0'
|
109
|
-
- !ruby/object:Gem::Dependency
|
110
|
-
name: guard-minitest
|
111
|
-
requirement: !ruby/object:Gem::Requirement
|
112
|
-
requirements:
|
113
|
-
- - ">="
|
114
|
-
- !ruby/object:Gem::Version
|
115
|
-
version: '0'
|
116
|
-
type: :development
|
117
|
-
prerelease: false
|
118
|
-
version_requirements: !ruby/object:Gem::Requirement
|
119
|
-
requirements:
|
120
|
-
- - ">="
|
121
|
-
- !ruby/object:Gem::Version
|
122
|
-
version: '0'
|
123
|
-
- !ruby/object:Gem::Dependency
|
124
|
-
name: guard-rubocop
|
125
|
-
requirement: !ruby/object:Gem::Requirement
|
126
|
-
requirements:
|
127
|
-
- - ">="
|
128
|
-
- !ruby/object:Gem::Version
|
129
|
-
version: '0'
|
130
|
-
type: :development
|
131
|
-
prerelease: false
|
132
|
-
version_requirements: !ruby/object:Gem::Requirement
|
133
|
-
requirements:
|
134
|
-
- - ">="
|
135
|
-
- !ruby/object:Gem::Version
|
136
|
-
version: '0'
|
137
|
-
- !ruby/object:Gem::Dependency
|
138
|
-
name: minitest
|
139
|
-
requirement: !ruby/object:Gem::Requirement
|
140
|
-
requirements:
|
141
|
-
- - ">="
|
142
|
-
- !ruby/object:Gem::Version
|
143
|
-
version: 5.0.0
|
144
|
-
type: :development
|
145
|
-
prerelease: false
|
146
|
-
version_requirements: !ruby/object:Gem::Requirement
|
147
|
-
requirements:
|
148
|
-
- - ">="
|
149
|
-
- !ruby/object:Gem::Version
|
150
|
-
version: 5.0.0
|
151
|
-
- !ruby/object:Gem::Dependency
|
152
|
-
name: ndr_dev_support
|
153
|
-
requirement: !ruby/object:Gem::Requirement
|
154
|
-
requirements:
|
155
|
-
- - ">="
|
156
|
-
- !ruby/object:Gem::Version
|
157
|
-
version: '6.0'
|
158
|
-
- - "<"
|
159
|
-
- !ruby/object:Gem::Version
|
160
|
-
version: '8.0'
|
161
|
-
type: :development
|
162
|
-
prerelease: false
|
163
|
-
version_requirements: !ruby/object:Gem::Requirement
|
164
|
-
requirements:
|
165
|
-
- - ">="
|
166
|
-
- !ruby/object:Gem::Version
|
167
|
-
version: '6.0'
|
168
|
-
- - "<"
|
169
|
-
- !ruby/object:Gem::Version
|
170
|
-
version: '8.0'
|
171
|
-
- !ruby/object:Gem::Dependency
|
172
|
-
name: pry
|
173
|
-
requirement: !ruby/object:Gem::Requirement
|
174
|
-
requirements:
|
175
|
-
- - ">="
|
176
|
-
- !ruby/object:Gem::Version
|
177
|
-
version: '0'
|
178
|
-
type: :development
|
179
|
-
prerelease: false
|
180
|
-
version_requirements: !ruby/object:Gem::Requirement
|
181
|
-
requirements:
|
182
|
-
- - ">="
|
183
|
-
- !ruby/object:Gem::Version
|
184
|
-
version: '0'
|
185
|
-
- !ruby/object:Gem::Dependency
|
186
|
-
name: rake
|
187
|
-
requirement: !ruby/object:Gem::Requirement
|
188
|
-
requirements:
|
189
|
-
- - ">="
|
190
|
-
- !ruby/object:Gem::Version
|
191
|
-
version: '0'
|
192
|
-
type: :development
|
193
|
-
prerelease: false
|
194
|
-
version_requirements: !ruby/object:Gem::Requirement
|
195
|
-
requirements:
|
196
|
-
- - ">="
|
197
|
-
- !ruby/object:Gem::Version
|
198
|
-
version: '0'
|
199
|
-
- !ruby/object:Gem::Dependency
|
200
|
-
name: terminal-notifier-guard
|
201
|
-
requirement: !ruby/object:Gem::Requirement
|
202
|
-
requirements:
|
203
|
-
- - ">="
|
204
|
-
- !ruby/object:Gem::Version
|
205
|
-
version: '0'
|
206
|
-
type: :development
|
207
|
-
prerelease: false
|
208
|
-
version_requirements: !ruby/object:Gem::Requirement
|
209
|
-
requirements:
|
210
|
-
- - ">="
|
211
|
-
- !ruby/object:Gem::Version
|
212
|
-
version: '0'
|
213
81
|
description: Domain Specific Language for querying NHS NCARDRS datastores
|
214
82
|
email: []
|
215
83
|
executables: []
|