canql 2.6.0 → 2.7.0

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Files changed (7) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +4 -0
  3. data/code_safety.yml +6 -6
  4. data/lib/canql/grammars/batch_types.treetop +13 -1
  5. data/lib/canql/nodes/batch_types.rb +18 -0
  6. data/lib/canql/version.rb +1 -1
  7. metadata +2 -2
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data/CHANGELOG.md CHANGED
@@ -1,6 +1,10 @@
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  ## [Unreleased]
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  *no unreleased changes*
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+ ## 2.7.0 / 2019-03-21
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+ ### Added
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+ * Added support for NIPT, RD_DEATH and UMUM batch types (#23)
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+
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  ## 2.6.0 / 2019-03-12
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  ### Added
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  * Added the ability to limit cases to primary or alias patients (#20)
data/code_safety.yml CHANGED
@@ -19,7 +19,7 @@ file safety:
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  CHANGELOG.md:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: d26cf2ffd4e2615c9c140cce56be1a809252f331
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+ safe_revision: 1c52e8012fa111fc6d07bd1b67b30b43bc0e5fd2
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  CODE_OF_CONDUCT.md:
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  comments:
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  reviewed_by: drewthorp
@@ -77,7 +77,7 @@ file safety:
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  lib/canql/grammars/batch_types.treetop:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: '0967ae095f7215d4972856133f5c36bf00a28391'
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+ safe_revision: 1892161f3c300f3b199aa318b3fe23a54dd80829
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  lib/canql/grammars/dates.treetop:
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  comments: It is a known issue that this is potentially susceptible to certain
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  kinds of DoS attack
@@ -134,7 +134,7 @@ file safety:
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  lib/canql/nodes/batch_types.rb:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: '0967ae095f7215d4972856133f5c36bf00a28391'
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+ safe_revision: 1892161f3c300f3b199aa318b3fe23a54dd80829
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  lib/canql/nodes/dates.rb:
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  comments:
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  reviewed_by: timgentry
@@ -178,7 +178,7 @@ file safety:
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  lib/canql/version.rb:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: d26cf2ffd4e2615c9c140cce56be1a809252f331
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+ safe_revision: 1c52e8012fa111fc6d07bd1b67b30b43bc0e5fd2
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  test/anomaly_test_helper.rb:
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  comments:
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  reviewed_by: timgentry
@@ -206,7 +206,7 @@ file safety:
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  test/nodes/e_base_records_test.rb:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: '0967ae095f7215d4972856133f5c36bf00a28391'
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+ safe_revision: 1892161f3c300f3b199aa318b3fe23a54dd80829
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  test/nodes/genetic_tests_test.rb:
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  comments:
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  reviewed_by: josh.pencheon
@@ -218,7 +218,7 @@ file safety:
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  test/nodes/mother_e_base_records_test.rb:
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  comments:
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  reviewed_by: josh.pencheon
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- safe_revision: '0967ae095f7215d4972856133f5c36bf00a28391'
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+ safe_revision: 1892161f3c300f3b199aa318b3fe23a54dd80829
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  test/nodes/patient_test.rb:
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  comments:
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  reviewed_by: josh.pencheon
data/lib/canql/grammars/batch_types.treetop CHANGED
@@ -1,7 +1,7 @@
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  module Canql
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  grammar BatchTypes
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  rule batch_type
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- (paediatric / enote2 / badger / ucyto) <Nodes::BatchTypeNode>
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+ (paediatric / enote2 / badger / ucyto / nipt / rddeath / umum) <Nodes::BatchTypeNode>
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  end
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  rule paediatric
@@ -19,5 +19,17 @@ module Canql
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  rule ucyto
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  ('ucyto' / 'cytogenetic' / 'cyto') <Nodes::UcytoNode>
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  end
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+
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+ rule nipt
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+ 'nipt' <Nodes::NiptNode>
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+ end
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+
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+ rule rddeath
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+ ('rddeath' / 'rare disease death') <Nodes::RddeathNode>
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+ end
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+
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+ rule umum
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+ ('umum' / 'mum') <Nodes::UmumNode>
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+ end
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  end
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  end
data/lib/canql/nodes/batch_types.rb CHANGED
@@ -32,5 +32,23 @@ module Canql #:nodoc: all
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  'ucyto'
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  end
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  end
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+
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+ module NiptNode
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+ def normalise
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+ 'nipt'
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+ end
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+ end
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+
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+ module RddeathNode
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+ def normalise
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+ 'rd_death'
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+ end
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+ end
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+
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+ module UmumNode
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+ def normalise
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+ 'umum'
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+ end
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+ end
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  end
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  end
data/lib/canql/version.rb CHANGED
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  # This stores the current version of the Canql gem
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  module Canql
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- VERSION = '2.6.0'
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+ VERSION = '2.7.0'
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  end
metadata CHANGED
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  --- !ruby/object:Gem::Specification
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  name: canql
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  version: !ruby/object:Gem::Version
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- version: 2.6.0
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+ version: 2.7.0
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  platform: ruby
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  authors:
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  - PHE NDR Development Team
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  autorequire:
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  bindir: exe
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  cert_chain: []
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- date: 2019-03-12 00:00:00.000000000 Z
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+ date: 2019-03-21 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: chronic