cagnut_bwa 0.3.3 → 0.3.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 2e4b4f7800e674673c6c89535427a3338b1be1e4
-  data.tar.gz: b01d2b22d2987f7bd637338cba42cac186b04200
+  metadata.gz: 2f2b4f52b3ec9d58d9fb862efab94d0b4fe53d4d
+  data.tar.gz: 446561fe4b8586de0fb9a389cccbb37a9ff2eb4d
 SHA512:
-  metadata.gz: 4f4b424a1418f8a142723ba283d0fae36eee7e2f56354e50b7a3a6610982dd15ee4770304fe852a39686e0c95eb927ec8b0aed7d97031fff8c5e7f1f0be4d0d8
-  data.tar.gz: ed764a78b7f6e845908ec97bd39134c59ac37a2de02ac3d087fe8acb6f2ab6fa8ac93ee31b3ab287fa23bd90284335919cc622f548efb3418950dac7a4fa26b3
+  metadata.gz: 986b2c6462fe42501b9f1e68a7da4e711ce9985aa02ba8f3b90a2ad0017bc8aca635a20eef21510a50560494723460d92bc38d16cda7406127a22916e35d306c
+  data.tar.gz: f301f4e6a8cdf5b0dba38cda08330f4273b9bfbc093c605736061b20344d0126da9b53491d1f7a0aa8afc33e0d4b54abe5678615bef2be4034fc078f2684d3ee

data/lib/cagnut_bwa/functions/templates/aln.sh

@@ -26,7 +26,7 @@ else
 fi
 
 #check for correct number of sequences processed, based on fastq records
-PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\+")
+PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\\\+")
 
 echo "checking stdout file: " #{jobs_dir}/#{script_name}.err
 echo "bwa processed" $PROCESSED
@@ -79,7 +79,7 @@ else
 fi
 
 #check for correct number of sequences processed, based on fastq records
-PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\+")
+PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\\\+")
 echo "checking stdout file: " #{jobs_dir}/#{script_name}.err
 echo "bwa processed" $PROCESSED
 

data/lib/cagnut_bwa/functions/templates/bwa_samp_one_fastq.sh

@@ -26,7 +26,7 @@ else
 fi
 
 #check for correct number of sequences processed, based on fastq records
-PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\+")
+PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\\\+")
 
 echo "checking stdout file: " #{jobs_dir}/#{script_name}.err
 echo "bwa processed" $PROCESSED

data/lib/cagnut_bwa/functions/templates/bwa_samse_one_fastq.sh

@@ -27,7 +27,7 @@ fi
 
 #check for correct number of sequences processed, based on fastq records
 
-PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\+")
+PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\\\+")
 
 echo "checking stdout file: " #{jobs_dir}/#{script_name}.err
 echo "bwa processed" $PROCESSED

data/lib/cagnut_bwa/functions/templates/samp.sh

@@ -35,7 +35,7 @@ else
 fi
 
 #check for correct number of sequences processed, based on fastq records
-PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\+")
+PROCESSED=$(tail -5 #{jobs_dir}/#{script_name}.err | grep " sequences have been processed." | grep -o "[0-9]\\\+")
 
 echo "checking stdout file: " #{jobs_dir}/#{script_name}.err
 echo "bwa processed" $PROCESSED

data/lib/cagnut_bwa/version.rb

@@ -1,3 +1,3 @@
 module CagnutBwa
-  VERSION = "0.3.3"
+  VERSION = "0.3.4"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: cagnut_bwa
 version: !ruby/object:Gem::Version
-  version: 0.3.3
+  version: 0.3.4
 platform: ruby
 authors:
 - Shi-Gang Wang
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2016-11-15 00:00:00.000000000 Z
+date: 2016-12-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: cagnut_core