bulk_data_test_kit 0.9.0

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA256:
+  metadata.gz: 35fe284d715cfa81554188cf0d1c8e5d50680581c94393621d2b787244ed02dc
+  data.tar.gz: 69db567ad4af83bfd3494ab56f330ed9ad2d850be0bf124f605de25e04941a6d
+SHA512:
+  metadata.gz: e04ac154598f5efc1983c5e47bd97297ac4ccfc09ab67c97956a94741391e4ba41ce8274bd562a4387914e67d0a806f34d3d2841fd39b4917fcb11e58aacf027
+  data.tar.gz: 4d6ebe6ffadcd7fa4ae76e7d67b0cd2098ce5d4badc3f659ebeadc72f0ad8eebd891d68b3ea13e4084a235c66863d7db51632366e65012d31dbadcdfd0b91e26

data/LICENSE

@@ -0,0 +1,201 @@
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data/lib/bulk_data_test_kit/bulk_data_jwks.json

@@ -0,0 +1,58 @@
+{
+	"keys": 
+	[{
+		"kty": "EC",
+		"crv": "P-384",
+		"x": "JQKTsV6PT5Szf4QtDA1qrs0EJ1pbimQmM2SKvzOlIAqlph3h1OHmZ2i7MXahIF2C",
+		"y": "bRWWQRJBgDa6CTgwofYrHjVGcO-A7WNEnu4oJA5OUJPPPpczgx1g2NsfinK-D2Rw",
+		"use": "sig",
+		"key_ops": [
+			"verify"
+		],
+		"ext": true,
+		"kid": "4b49a739d1eb115b3225f4cf9beb6d1b",
+		"alg": "ES384"
+	},
+	{
+		"kty": "EC",
+		"crv": "P-384",
+		"d": "kDkn55p7gryKk2tj6z2ij7ExUnhi0ngxXosvqa73y7epwgthFqaJwApmiXXU2yhK",
+		"x": "JQKTsV6PT5Szf4QtDA1qrs0EJ1pbimQmM2SKvzOlIAqlph3h1OHmZ2i7MXahIF2C",
+		"y": "bRWWQRJBgDa6CTgwofYrHjVGcO-A7WNEnu4oJA5OUJPPPpczgx1g2NsfinK-D2Rw",
+		"key_ops": [
+			"sign"
+		],
+		"ext": true,
+		"kid": "4b49a739d1eb115b3225f4cf9beb6d1b",
+		"alg": "ES384"
+	},
+	{
+		"kty": "RSA",
+		"alg": "RS384",
+		"n": "vjbIzTqiY8K8zApeNng5ekNNIxJfXAue9BjoMrZ9Qy9m7yIA-tf6muEupEXWhq70tC7vIGLqJJ4O8m7yiH8H2qklX2mCAMg3xG3nbykY2X7JXtW9P8VIdG0sAMt5aZQnUGCgSS3n0qaooGn2LUlTGIR88Qi-4Nrao9_3Ki3UCiICeCiAE224jGCg0OlQU6qj2gEB3o-DWJFlG_dz1y-Mxo5ivaeM0vWuodjDrp-aiabJcSF_dx26sdC9dZdBKXFDq0t19I9S9AyGpGDJwzGRtWHY6LsskNHLvo8Zb5AsJ9eRZKpnh30SYBZI9WHtzU85M9WQqdScR69Vyp-6Uhfbvw",
+		"e": "AQAB",
+		"use": "sig",
+		"key_ops": [
+			"verify"
+		],
+		"ext": true,
+		"kid": "b41528b6f37a9500edb8a905a595bdd7"
+	},
+	{
+		"kty": "RSA",
+		"alg": "RS384",
+		"n": "vjbIzTqiY8K8zApeNng5ekNNIxJfXAue9BjoMrZ9Qy9m7yIA-tf6muEupEXWhq70tC7vIGLqJJ4O8m7yiH8H2qklX2mCAMg3xG3nbykY2X7JXtW9P8VIdG0sAMt5aZQnUGCgSS3n0qaooGn2LUlTGIR88Qi-4Nrao9_3Ki3UCiICeCiAE224jGCg0OlQU6qj2gEB3o-DWJFlG_dz1y-Mxo5ivaeM0vWuodjDrp-aiabJcSF_dx26sdC9dZdBKXFDq0t19I9S9AyGpGDJwzGRtWHY6LsskNHLvo8Zb5AsJ9eRZKpnh30SYBZI9WHtzU85M9WQqdScR69Vyp-6Uhfbvw",
+		"e": "AQAB",
+		"d": "rriV9GYimi5by7TOW4xNh6_gYBHVRDBsft2OFF8qapdVHt2GNuRDDxc_B6ga6TY2Enh2MLKLTr1dD3W4FIdTCJiMerrorp07FJS7nJEMgWQDxrfgkX4_EqrhW42L5d4vypYnRXEEW6u4gzkx5uFOkdvJBIK7CsIdSaBFYhochnynNgvbKWasi4rl2hayEH8tdf3B7Z6OIH9alspBTaq3j_zJt_KkrpYEzIUb4UgALB5NTWn5YKr0Avk_asOg8YfjViQwO9ASGaWjQeJ2Rx8OEQwBMQHSDMCSWNiWmYOu9PcwSZFc1vLxqzyIM8QrQSJHCCMo_wGYgke_r0CLeONHEQ",
+		"p": "5hH_QApWGeobRi1n7XbMfJYohB8K3JDPa0MspfplHpJ-17JiGG2sNoBdBcpaPRf9OX48P8VqO0qrSSRAk-I-uO6OO9BHbIukXJILqnY2JmurYzbcYbt5FVbknlHRJojkF6-7sFBazpueUlOnXCw7X7Z_SkfNE4QX5Ejm2Zm5mek",
+		"q": "06bZz7c7K9s1-aEZsxYnLJ9eTpKlt1tIBDA_LwIh5W3w259pes2kUtimbnkyOf-V2ZIERsFCh5s-S9IOEMvAIa6M5j9GW1ILNT7AcHIUfcyFcH-FF8BU_KJdRP5PXnIXFdYcylvsdoIdchy1AaUIzyiKRCU3HBYI75hez0l_F2c",
+		"dp": "h_sVIXW6hCCRND48EedIX06k7conMkxIu_39ErDXOWWeoMAnKIcR5TijQnviL__QxD1vQMXezuKIMHfDz2RGbClbWdD1lhtG7wvG515tDPJQXxia0wzqOQmdoFF9S8hXAAT26vPjaAAkaEZXQaxG_4Au5elgNWu6b0wDXZN1Vpk",
+		"dq": "GqS0YpuUTU8JGmWXUJ4HTGy7eHSpe8134V8ZdRd1oOYYHe2RX64nc25mdR24nuh3uq3Q7_9AGsYGL5E_yAl-JD9O6WUpvDE1y_wcSYty3Os0GRdUb8r8Z9kgmKDS6Pa_xTXw5eBwgfKbNlQ6zPwzgbB-x1lP-K8lbNPni3ybDR0",
+		"qi": "cqQfoi0sM5Su8ZOhznmdWrDIQB28H6fBKiabgaIKkbWZV4e0nwFvLquHjPOvv4Ao8iEGU5dyhvg0n5BKYPi-4mp6M6OA1sy0NrTr7EsKSYGyu2pBq9rw4oAYTM2LXKg6K-awgUUlkc451IwxHBAe15PWCBM3kvLQeijNid0Vz5I",
+		"key_ops": [
+			"sign"
+		],
+		"ext": true,
+		"kid": "b41528b6f37a9500edb8a905a595bdd7"
+	}]
+}

data/lib/bulk_data_test_kit/bulk_data_test_kit_properties.rb

@@ -0,0 +1,20 @@
+# frozen_string_literal: true
+
+module BulkDataTestKit
+  class BulkDataTestKitProperties
+    ATTRIBUTES = %i[
+      resource_type
+      bulk_export_url
+    ].freeze
+
+    ATTRIBUTES.each { |name| attr_reader name }
+
+    def initialize(**properties)
+      properties.each do |key, value|
+        raise StandardError, "Unknown search test property: #{key}" unless ATTRIBUTES.include?(key)
+
+        instance_variable_set(:"@#{key}", value)
+      end
+    end
+  end
+end

data/lib/bulk_data_test_kit/bulk_export_validation_tester.rb

@@ -0,0 +1,214 @@
+# frozen_string_literal: true
+
+module BulkDataTestKit
+  module BulkExportValidationTester
+    attr_reader :metadata
+
+    MAX_NUM_COLLECTED_LINES = 100
+    MIN_RESOURCE_COUNT = 2
+
+    def resources_from_all_files
+      @resources_from_all_files ||= {}
+    end
+
+    def first_error
+      @first_error ||= {}
+    end
+
+    def patient_ids_seen
+      scratch[:patient_ids_seen] ||= []
+    end
+
+    def resource_type
+      @resource_type ||= ''
+    end
+
+    def validation_errors
+      @validation_errors ||= []
+    end
+
+    def build_headers(use_token)
+      headers = { accept: 'application/fhir+ndjson' }
+      headers.merge!({ authorization: "Bearer #{bearer_token}" }) if use_token == 'true'
+      headers
+    end
+
+    def stream_ndjson(endpoint, headers, process_chunk_line, process_response) # rubocop:disable Metrics/CyclomaticComplexity
+      hanging_chunk = String.new
+
+      process_body = proc { |chunk|
+        hanging_chunk << chunk
+        chunk_by_lines = hanging_chunk.lines
+
+        hanging_chunk = chunk_by_lines.pop || String.new
+
+        chunk_by_lines.each do |elem|
+          process_chunk_line.call(elem)
+        end
+      }
+
+      stream(process_body, endpoint, headers:)
+
+      max_redirect = 5
+
+      while [301, 302, 303, 307].include?(response[:status]) &&
+            request.response_header('location')&.value.present? &&
+            max_redirect.positive?
+
+        max_redirect -= 1
+
+        redirect_url = request.response_header('location')&.value
+
+        # handle relative redirects
+        redirect_url = URI.parse(endpoint).merge(redirect_url).to_s unless redirect_url.start_with?('http')
+
+        redirect_headers = headers.except(:authorization)
+
+        stream(process_body, redirect_url, headers: redirect_headers)
+      end
+
+      process_chunk_line.call(hanging_chunk)
+      process_response.call(response)
+    end
+
+    def check_file_request(url, bulk_requires_access_token) # rubocop:disable Metrics/CyclomaticComplexity
+      line_count = 0
+      resources = Hash.new { |h, k| h[k] = [] }
+
+      process_line = proc do |line|
+        next unless lines_to_validate.blank? ||
+                    line_count < lines_to_validate.to_i ||
+                    (@resource_type == 'Patient' && patient_ids_seen.length < MIN_RESOURCE_COUNT)
+
+        line_count += 1
+
+        begin
+          resource = FHIR.from_contents(line)
+        rescue StandardError
+          skip "Server response at line \"#{line_count}\" is not a processable FHIR resource."
+        end
+
+        assert !resource.nil?,
+               "Resource at line \"#{line_count}\" could not be converted to a #{@resource_type} FHIR resource"
+
+        if resource.resourceType != @resource_type
+          assert false, "Resource type \"#{resource.resourceType}\" at line \"#{line_count}\" does not match type " \
+                        "defined in output \"#{@resource_type}\""
+        end
+
+        scratch[:patient_ids_seen] = patient_ids_seen | [resource.id] if @resource_type == 'Patient'
+
+        unless resource_is_valid?(resource:)
+          if first_error.key?(:line_number)
+            @invalid_resource_count_all += 1
+            @invalid_resource_count += 1
+          else
+            @invalid_resource_count_all.zero? ? @invalid_resource_count_all = 1 : @invalid_resource_count_all += 1
+
+            @invalid_resource_count = 1
+            first_error[:line_number] = line_count
+            first_error[:messages] = messages.dup
+          end
+        end
+      end
+
+      process_headers = proc { |response|
+        value = (response[:headers].find { |header| header.name.downcase == 'content-type' })&.value
+        unless value&.start_with?('application/fhir+ndjson')
+          skip "Content type must have 'application/fhir+ndjson' but found '#{value}'"
+        end
+      }
+
+      stream_ndjson(url, build_headers(bulk_requires_access_token), process_line, process_headers)
+      resources_from_all_files.merge!(resources) do |_key, all_resources, file_resources|
+        all_resources | file_resources
+      end
+      line_count
+    end
+
+    def process_validation_errors(resource_count)
+      return if @invalid_resource_count.nil? || @invalid_resource_count.zero?
+
+      first_error_message = "The line number for the first failed #{@resource_type} resource is #{first_error[:line_number]}."
+
+      messages.clear
+      messages.concat(first_error[:messages])
+
+      error_message = "#{@invalid_resource_count} / #{resource_count} #{@resource_type} resources failed profile validation. " \
+              "#{first_error_message}"
+
+      validation_errors.append(error_message)
+    end
+
+    def perform_bulk_export_validation(bulk_status_output: '', bulk_requires_access_token: '')
+      skip_if bulk_status_output.blank?, 'Could not verify this functionality when Bulk Status Output is not provided'
+      skip_if (bulk_requires_access_token == 'true' && bearer_token.blank?),
+              'Could not verify this functionality when Bearer Token is required and not provided'
+
+      $num_messages = 0
+      $capped_message = false
+      $num_errors = 0
+      $capped_errors = false
+
+      assert_valid_json(bulk_status_output)
+
+      full_file_list = JSON.parse(bulk_status_output)
+      if full_file_list.empty?
+        message = 'No resource file items returned by server.'
+        skip message
+      end
+
+      @resources_from_all_files = {}
+
+      resource_types = full_file_list.map { |file| file['type'] }.uniq
+      all_resource_count = 0
+      @invalid_resource_count_all = 0
+      @validation_errors = []
+
+      resource_types.each do |type|
+        @resource_type = type
+        @first_error = {}
+        @invalid_resource_count = 0
+        resource_count = 0
+
+        file_list = full_file_list.select { |file| file['type'] == @resource_type }
+
+        file_list.each do |file|
+          count = check_file_request(file['url'], bulk_requires_access_token)
+          all_resource_count += count
+          resource_count += count
+        end
+
+        process_validation_errors(resource_count)
+      end
+
+      assert @invalid_resource_count_all.zero?,
+             "#{@invalid_resource_count_all} / #{all_resource_count} Resources failed validation. \n" + @validation_errors.join("\n")
+
+      pass "Successfully validated #{all_resource_count} Resources"
+    end
+
+    def ndjson_download_requiresAccessToken_check(bulk_data_download_url: '', bulk_requires_access_token: '')
+      skip_if bulk_data_download_url.blank?, 'Could not verify this functionality when no download link was provided'
+      skip_if bulk_requires_access_token.blank?,
+              'Could not verify this functionality when requiresAccessToken is not provided'
+      omit_if bulk_requires_access_token == 'false',
+              'Could not verify this functionality when requiresAccessToken is false'
+      skip_if bearer_token.blank?, 'Could not verify this functionality when Bearer Token is not provided'
+
+      get(bulk_data_download_url, headers: { accept: 'application/fhir+ndjson' })
+      assert_response_status([400, 401])
+    end
+
+    def export_multiple_patients_check
+      skip 'No Patient resources processed from bulk data export.' unless patient_ids_seen.present?
+
+      begin
+        assert patient_ids_seen.length >= BulkExportValidationTester::MIN_RESOURCE_COUNT,
+               'Bulk data export did not have multiple Patient resources.'
+      ensure
+        scratch[:patient_ids_seen] = []
+      end
+    end
+  end
+end

data/lib/bulk_data_test_kit/export_cancel_tests.rb

@@ -0,0 +1,43 @@
+# frozen_string_literal: true
+
+require_relative 'export_kick_off_performer'
+require_relative 'bulk_data_test_kit_properties'
+
+module BulkDataTestKit
+  module BulkDataExportCancelTests
+    extend Forwardable
+
+    def_delegators 'self.class', :properties
+    def_delegators 'properties',
+                   :resource_type,
+                   :bulk_export_url
+
+    def perform_export_cancel_test
+      use_token = !bearer_token.blank?
+      url = bulk_export_url.dup
+      url = bulk_export_url.gsub('[group_id]', group_id) if resource_type == 'Group'
+
+      perform_export_kick_off_request(use_token:, url:)
+      assert_response_status(202)
+      begin
+        request.response_header('content-location')&.value
+      ensure
+        delete_export_kick_off_request
+      end
+    end
+
+    def perform_cancelled_polling_test(bulk_cancelled_polling_url)
+      skip 'No polling url available' unless bulk_cancelled_polling_url.present?
+
+      get(bulk_cancelled_polling_url, headers: { authorization: "Bearer #{bearer_token}", accept: 'application/json' })
+
+      assert_response_status(404)
+
+      assert_valid_json(response[:body])
+      response_body = JSON.parse(response[:body])
+
+      assert response_body['resourceType'] == 'OperationOutcome', 'Server did not return an OperationOutcome'
+      assert_valid_resource(resource: FHIR::OperationOutcome.new(response_body))
+    end
+  end
+end

data/lib/bulk_data_test_kit/export_kick_off_performer.rb

@@ -0,0 +1,26 @@
+# frozen_string_literal: true
+
+module BulkDataTestKit
+  module ExportKickOffPerformer
+    def perform_export_kick_off_request(use_token: true, params: {}, url: '')
+      skip_if use_token && bearer_token.blank?, 'Could not verify this functionality when bearer token is not set'
+
+      headers = { accept: 'application/fhir+json', prefer: 'respond-async' }
+      headers.merge!({ authorization: "Bearer #{bearer_token}" }) if use_token
+
+      param_str = params.map { |k, v| URI.encode_www_form(k => v) }.join('&')
+      url.concat("?#{param_str}") unless param_str.empty?
+      get(url, client: :bulk_server, name: :export, headers:)
+    end
+
+    def delete_export_kick_off_request
+      polling_url = request&.response_header('content-location')&.value
+      assert polling_url.present?, 'Export response header did not include "Content-Location"'
+
+      headers = { accept: 'application/json', authorization: "Bearer #{bearer_token}" }
+
+      delete(polling_url, headers:)
+      assert_response_status(202)
+    end
+  end
+end