bolognese 1.4.5 → 1.4.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +8 -8
- data/bolognese.gemspec +1 -1
- data/lib/bolognese/version.rb +1 -1
- data/spec/fixtures/datacite-schema-2.2.xml +80 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/dataset_neurophysiology.yml +116 -0
- data/spec/writers/bibtex_writer_spec.rb +15 -0
- metadata +8 -6
checksums.yaml
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data/Gemfile.lock
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specs:
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bolognese (1.4.
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bolognese (1.4.6)
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activesupport (>= 4.2.5, < 6)
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benchmark_methods (~> 0.7)
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bibtex-ruby (
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bibtex-ruby (>= 5.1.0)
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builder (~> 3.2, >= 3.2.2)
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citeproc-ruby (~> 1.1, >= 1.1.10)
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colorize (~> 0.8.1)
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benchmark_methods (0.7)
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bibtex-ruby (
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bibtex-ruby (5.1.1)
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latex-decode (~> 0.0)
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builder (3.2.4)
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citeproc (1.0.10)
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codeclimate-test-reporter (1.0.9)
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simplecov (<= 0.13)
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colorize (0.8.1)
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concurrent-ruby (1.1.
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concurrent-ruby (1.1.6)
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crack (0.4.3)
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safe_yaml (~> 1.0.0)
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crass (1.0.6)
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jsonlint (0.3.0)
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multipart-post (2.1.1)
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namae (1.0.1)
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nokogiri (1.10.
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nokogiri (1.10.8)
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mini_portile2 (~> 2.4.0)
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oj (3.10.2)
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oj_mimic_json (1.0.1)
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data/bolognese.gemspec
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s.add_dependency 'loofah', '~> 2.0', '>= 2.0.3'
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s.add_dependency 'activesupport', '>= 4.2.5', '< 6'
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s.add_dependency 'bibtex-ruby', '>= 5.1.0'
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s.add_dependency 'thor', '~> 0.19'
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s.add_dependency 'colorize', '~> 0.8.1'
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s.add_dependency 'namae', '~> 1.0'
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data/lib/bolognese/version.rb
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<resource
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xmlns="http://datacite.org/schema/kernel-2.2"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-2.2 http://schema.datacite.org/meta/kernel-2.2/metadata.xsd">
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<identifier identifierType="DOI">10.6080/K0F769GP</identifier>
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<creators>
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<creator>
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</creator>
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<creatorName>Shaevitz, SS</creatorName>
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<creatorName>Amin, Noopur</creatorName>
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<creatorName>Hsu, A</creatorName>
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<creatorName>Singh, NC</creatorName>
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<creatorName>Grace, GA</creatorName>
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<creatorName>David, SV</creatorName>
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<creatorName>Vinje, WE</creatorName>
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<titles>
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<title>Single-unit recordings from two auditory areas in male zebra finches</title>
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<title titleType="AlternativeTitle">CRCNS.org aa-1</title>
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<publisher>CRCNS.org</publisher>
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<publicationYear>2009</publicationYear>
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<subjects>
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<subject>Neuroscience</subject>
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<subject>Electrophysiology</subject>
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<subject>auditory area</subject>
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<subject>avian (zebra finch)</subject>
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<language>eng</language>
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<resourceType resourceTypeGeneral="Dataset">Dataset/Neurophysiology</resourceType>
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<size>17 MB</size>
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<descriptions>
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<description descriptionType="Other">
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Data consists of simultaneous single-unit recordings from two auditory areas in male zebra finches.
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</description>
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recordings from two auditory areas in male zebra finches"},{"title":"CRCNS.org
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aa-1","titleType":"AlternativeTitle"}],"publisher":"CRCNS.org","container":{},"publicationYear":2009,"subjects":[{"subject":"Neuroscience"},{"subject":"Electrophysiology"},{"subject":"auditory
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+
area"},{"subject":"avian (zebra finch)"}],"contributors":[],"dates":[{"date":"2009","dateType":"Issued"}],"language":"eng","types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset/Neurophysiology","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"sizes":["17
|
|
110
|
+
MB"],"formats":["application/matlab","audio/wav"],"version":null,"rightsList":[],"descriptions":[{"description":"Data
|
|
111
|
+
consists of simultaneous single-unit recordings from two auditory areas in
|
|
112
|
+
male zebra finches.","descriptionType":"Other"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"http://crcns.org/data-sets/aa/aa-1","contentUrl":null,"metadataVersion":2,"schemaVersion":"http://datacite.org/schema/kernel-2.2","source":null,"isActive":true,"state":"findable","reason":null,"viewCount":0,"downloadCount":0,"referenceCount":0,"citationCount":0,"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"viewsOverTime":[],"downloadsOverTime":[],"created":"2013-06-26T18:08:36.000Z","registered":"2013-06-26T18:08:37.000Z","published":"2009","updated":"2019-08-02T02:24:47.000Z"},"relationships":{"client":{"data":{"id":"cdl.ucb","type":"clients"}},"media":{"data":{"id":"10.6080/k0f769gp","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"versions":{"data":[]}}},"included":[{"id":"cdl.ucb","type":"clients","attributes":{"name":"UC
|
|
113
|
+
Berkeley","symbol":"CDL.UCB","year":2012,"contactEmail":"ezid@ucop.edu","alternateName":null,"description":null,"language":null,"clientType":"periodical","domains":"*","re3data":null,"opendoar":null,"issn":null,"url":null,"created":"2012-03-06T06:01:31.000Z","updated":"2019-07-27T12:46:55.000Z","isActive":true,"hasPassword":true},"relationships":{"provider":{"data":{"id":"cdl","type":"providers"}},"prefixes":{"data":[{"id":"10.6078","type":"prefixes"},{"id":"10.6080","type":"prefixes"},{"id":"10.7286","type":"prefixes"},{"id":"10.7297","type":"prefixes"},{"id":"10.7299","type":"prefixes"},{"id":"10.7922","type":"prefixes"},{"id":"10.7928","type":"prefixes"},{"id":"10.7932","type":"prefixes"},{"id":"10.7933","type":"prefixes"},{"id":"10.7941","type":"prefixes"},{"id":"10.7943","type":"prefixes"},{"id":"10.15779","type":"prefixes"},{"id":"10.18118","type":"prefixes"},{"id":"10.18431","type":"prefixes"},{"id":"10.18734","type":"prefixes"},{"id":"10.20357","type":"prefixes"},{"id":"10.20358","type":"prefixes"},{"id":"10.21239","type":"prefixes"},{"id":"10.21418","type":"prefixes"},{"id":"10.21990","type":"prefixes"},{"id":"10.25342","type":"prefixes"},{"id":"10.25344","type":"prefixes"},{"id":"10.25350","type":"prefixes"},{"id":"10.25498","type":"prefixes"}]}}}]}'
|
|
114
|
+
http_version:
|
|
115
|
+
recorded_at: Thu, 13 Feb 2020 17:36:14 GMT
|
|
116
|
+
recorded_with: VCR 3.0.3
|
|
@@ -160,5 +160,20 @@ describe Bolognese::Metadata, vcr: true do
|
|
|
160
160
|
expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.25491/9hx8-ke93")
|
|
161
161
|
expect(bibtex[:author]).to eq("{The GTEx Consortium}")
|
|
162
162
|
end
|
|
163
|
+
|
|
164
|
+
it "dataset neurophysiology" do
|
|
165
|
+
input = "10.6080/k0f769gp"
|
|
166
|
+
subject = Bolognese::Metadata.new(input: input)
|
|
167
|
+
expect(subject.valid?).to be true
|
|
168
|
+
bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
|
|
169
|
+
expect(bibtex[:bibtex_type].to_s).to eq("misc")
|
|
170
|
+
expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.6080/k0f769gp")
|
|
171
|
+
expect(bibtex[:doi]).to eq("10.6080/k0f769gp")
|
|
172
|
+
expect(bibtex[:title]).to eq("Single-unit recordings from two auditory areas in male zebra finches")
|
|
173
|
+
expect(bibtex[:author]).to eq("Theunissen, Frederic E. and Hauber, ME and Woolley, Sarah M. N. and Gill, Patrick and Shaevitz, SS and Amin, Noopur and Hsu, A and Singh, NC and Grace, GA and Fremouw, Thane and Zhang, Junli and Cassey, P and Doupe, AJ and David, SV and Vinje, WE")
|
|
174
|
+
expect(bibtex[:publisher]).to eq("CRCNS.org")
|
|
175
|
+
expect(bibtex[:keywords]).to eq("Neuroscience, Electrophysiology, auditory area, avian (zebra finch)")
|
|
176
|
+
expect(bibtex[:year]).to eq("2009")
|
|
177
|
+
end
|
|
163
178
|
end
|
|
164
179
|
end
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: bolognese
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.4.
|
|
4
|
+
version: 1.4.6
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Martin Fenner
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2020-02-
|
|
11
|
+
date: 2020-02-17 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: maremma
|
|
@@ -122,16 +122,16 @@ dependencies:
|
|
|
122
122
|
name: bibtex-ruby
|
|
123
123
|
requirement: !ruby/object:Gem::Requirement
|
|
124
124
|
requirements:
|
|
125
|
-
- - "
|
|
125
|
+
- - ">="
|
|
126
126
|
- !ruby/object:Gem::Version
|
|
127
|
-
version:
|
|
127
|
+
version: 5.1.0
|
|
128
128
|
type: :runtime
|
|
129
129
|
prerelease: false
|
|
130
130
|
version_requirements: !ruby/object:Gem::Requirement
|
|
131
131
|
requirements:
|
|
132
|
-
- - "
|
|
132
|
+
- - ">="
|
|
133
133
|
- !ruby/object:Gem::Version
|
|
134
|
-
version:
|
|
134
|
+
version: 5.1.0
|
|
135
135
|
- !ruby/object:Gem::Dependency
|
|
136
136
|
name: thor
|
|
137
137
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -783,6 +783,7 @@ files:
|
|
|
783
783
|
- spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml
|
|
784
784
|
- spec/fixtures/datacite-multiple-language.xml
|
|
785
785
|
- spec/fixtures/datacite-multiple-rights.xml
|
|
786
|
+
- spec/fixtures/datacite-schema-2.2.xml
|
|
786
787
|
- spec/fixtures/datacite-seriesinformation.xml
|
|
787
788
|
- spec/fixtures/datacite-xml-lang.xml
|
|
788
789
|
- spec/fixtures/datacite.json
|
|
@@ -1093,6 +1094,7 @@ files:
|
|
|
1093
1094
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/Dataset.yml
|
|
1094
1095
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml
|
|
1095
1096
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/climate_data.yml
|
|
1097
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/dataset_neurophysiology.yml
|
|
1096
1098
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml
|
|
1097
1099
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml
|
|
1098
1100
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/maremma.yml
|