bolognese 1.2.20 → 1.3.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    bolognese (1.2.20)
+    bolognese (1.3.1)
       activesupport (>= 4.2.5, < 6)
       benchmark_methods (~> 0.7)
       bibtex-ruby (~> 4.1)
@@ -13,7 +13,7 @@ PATH
       edtf (~> 3.0, >= 3.0.4)
       gender_detector (~> 0.1.2)
       iso8601 (~> 0.9.1)
-      json-ld-preloaded (~> 3.0, >= 3.0.2)
+      json-ld-preloaded (= 3.0.2)
       jsonlint (~> 0.2.0)
       loofah (~> 2.0, >= 2.0.3)
       maremma (>= 3.5.7, < 5)

data/bolognese.gemspec

@@ -30,7 +30,7 @@ Gem::Specification.new do |s|
   s.add_dependency 'csl-styles', '~> 1.0', '>= 1.0.1.8'
   s.add_dependency 'iso8601', '~> 0.9.1'
   s.add_dependency 'postrank-uri', '~> 1.0', '>= 1.0.18'
-  s.add_dependency 'json-ld-preloaded', '~> 3.0', '>= 3.0.2'
+  s.add_dependency 'json-ld-preloaded', '= 3.0.2'
   s.add_dependency 'jsonlint', '~> 0.2.0'
   s.add_dependency 'oj', '>= 2.8.3'
   s.add_dependency 'rdf-turtle', '~> 2.2'

data/lib/bolognese/author_utils.rb

@@ -51,7 +51,7 @@ module Bolognese
                  "givenName" => given_name,
                  "familyName" => family_name,
                  "nameIdentifiers" => name_identifiers,
-                 "affiliation" => parse_attributes(author.fetch("affiliation", nil)),
+                 "affiliation" => get_affiliations(author.fetch("affiliation", nil)),
                  "contributorType" => contributor_type }.compact
 
       return author if family_name.present?
@@ -74,10 +74,14 @@ module Bolognese
           "givenName" => given_name,
           "familyName" => family_name,
           "nameIdentifiers" => name_identifiers,
-          "affiliation" => parse_attributes(author.fetch("affiliation", nil)),
+          "affiliation" => author.fetch("affiliation", nil),
           "contributorType" => contributor_type }.compact
       else
-        { "nameType" => name_type, "name" => name }.compact
+        { "nameType" => name_type, 
+          "name" => name,
+          "nameIdentifiers" => name_identifiers,
+          "affiliation" => author.fetch("affiliation", nil),
+          "contributorType" => contributor_type }.compact
       end
     end
 
@@ -128,5 +132,24 @@ module Bolognese
         end
       end.join(" and ").presence
     end
+
+    def get_affiliations(affiliations)
+      Array.wrap(affiliations).map do |a|
+        if a.is_a?(String)
+          id = nil
+          name = a.squish
+          affiliation_identifier_scheme = nil
+        else
+          id = a["affiliationIdentifier"]
+          id = !id.to_s.start_with?("https://") && a["schemeURI"].present? ? normalize_id(a["schemeURI"] + id) : normalize_id(id)
+          name = a["__content__"].squish
+          affiliation_identifier_scheme = a["affiliationIdentifierScheme"]
+        end
+
+        { "id" => id,
+          "name" => name,
+          "affiliationIdentifierScheme" => affiliation_identifier_scheme }.compact
+      end.presence
+    end
   end
 end

data/lib/bolognese/datacite_utils.rb

@@ -76,7 +76,8 @@ module Bolognese
         xml.nameIdentifier(ni["nameIdentifier"], 'nameIdentifierScheme' => ni["nameIdentifierScheme"], 'schemeURI' => ni["schemeUri"])
       end
       Array.wrap(person["affiliation"]).each do |affiliation|
-        xml.affiliation(affiliation) 
+        attributes = { "affiliationIdentifierScheme" => affiliation["affiliationIdentifierScheme"], "schemeURI" => affiliation["schemeUri"] }.compact
+        xml.affiliation(affiliation["name"], attributes) 
       end
     end
 

data/lib/bolognese/readers/crossref_reader.rb

@@ -218,7 +218,7 @@ module Bolognese
               "name" => [a["surname"], a["given_name"]].join(", "),
               "givenName" => a["given_name"],
               "familyName" => a["surname"],
-              "affiliation" => a["affiliation"],
+              "affiliation" => Array.wrap(a["affiliation"]).map { |a| { "name" => a }}.presence,
               "contributorType" => contributor_role == "editor" ? "Editor" : nil }.compact
           else
             { "nameType" => "Organizational",

data/lib/bolognese/readers/datacite_reader.rb

@@ -142,9 +142,13 @@ module Bolognese
         sizes = Array.wrap(meta.dig("sizes", "size"))
         formats = Array.wrap(meta.dig("formats", "format"))
         funding_references = Array.wrap(meta.dig("fundingReferences", "fundingReference")).compact.map do |fr|
+          scheme_uri = parse_attributes(fr["funderIdentifier"], content: "schemeURI")
+          funder_identifier = parse_attributes(fr["funderIdentifier"])
+          funder_identifier = !funder_identifier.to_s.start_with?("https://") && scheme_uri.present? ? normalize_id(scheme_uri + funder_identifier) : normalize_id(funder_identifier)
+          
           {
             "funderName" => fr["funderName"],
-            "funderIdentifier" => normalize_id(parse_attributes(fr["funderIdentifier"])),
+            "funderIdentifier" => funder_identifier,
             "funderIdentifierType" => parse_attributes(fr["funderIdentifier"], content: "funderIdentifierType"),
             "awardNumber" => parse_attributes(fr["awardNumber"]),
             "awardUri" => parse_attributes(fr["awardNumber"], content: "awardURI"),

data/lib/bolognese/utils.rb

@@ -576,7 +576,20 @@ module Bolognese
 
     def to_schema_org_creators(element)
       element = Array.wrap(element).map do |c|
-        c["affiliation"] = { "@type" => "Organization", "name" => Array.wrap(c["affiliation"]).first } if c["affiliation"].present?
+        c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
+          if a.is_a?(String)
+            name = a
+            id = nil
+          else
+            name = a["name"]
+            id = a["id"]
+          end
+
+          { 
+            "@type" => "Organization", 
+            "@id" => id,
+            "name" => name }.compact
+        end.unwrap
         c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
         c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
         c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]
@@ -586,7 +599,20 @@ module Bolognese
 
     def to_schema_org_contributors(element)
       element = Array.wrap(element).map do |c|
-        c["affiliation"] = { "@type" => "Organization", "name" => Array.wrap(c["affiliation"]).first } if c["affiliation"].present?
+        c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
+          if a.is_a?(String)
+            name = a
+            id = nil
+          else
+            name = a["name"]
+            id = a["id"]
+          end
+
+          { 
+            "@type" => "Organization", 
+            "@id" => id,
+            "name" => name }.compact
+        end.unwrap
         c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
         c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
         c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]

data/lib/bolognese/version.rb

@@ -1,3 +1,3 @@
 module Bolognese
-  VERSION = "1.2.20"
+  VERSION = "1.3.1"
 end

data/resources/datacite-contributorType-v4.xsd

@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+   2013-05 v3.0: Addition of ID to simpleType element, added values "ResearchGroup" & "Other"
+   2014-08-20 v3.1: Addition of value "DataCurator"
+   2015-05-14 v4.0 dropped value "Funder", use new "funderReference" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="contributorType" id="contributorType">
+    <xs:annotation>
+      <xs:documentation>The type of contributor of the resource.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="ContactPerson"/>
+      <xs:enumeration value="DataCollector"/>
+      <xs:enumeration value="DataCurator"/>
+      <xs:enumeration value="DataManager"/>
+      <xs:enumeration value="Distributor"/>
+      <xs:enumeration value="Editor"/>
+      <xs:enumeration value="HostingInstitution"/>
+      <xs:enumeration value="Other"/>
+      <xs:enumeration value="Producer"/>
+      <xs:enumeration value="ProjectLeader"/>
+      <xs:enumeration value="ProjectManager"/>
+      <xs:enumeration value="ProjectMember"/>
+      <xs:enumeration value="RegistrationAgency"/>
+      <xs:enumeration value="RegistrationAuthority"/>
+      <xs:enumeration value="RelatedPerson"/>
+      <xs:enumeration value="ResearchGroup"/>
+      <xs:enumeration value="RightsHolder"/>
+      <xs:enumeration value="Researcher"/>
+      <xs:enumeration value="Sponsor"/>
+      <xs:enumeration value="Supervisor"/>
+      <xs:enumeration value="WorkPackageLeader"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-dateType-v4.xsd

@@ -0,0 +1,25 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+     2013-05 v3.0: Addition of ID to simpleType element; addition of value "Collected"; deleted "StartDate" & "EndDate"
+     2017-10-23 v4.1: Addition of value "Other"
+     2019-02-14 v4.2: Addition of value "Withdrawn"-->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="dateType" id="dateType">
+    <xs:annotation>
+      <xs:documentation>The type of date. Use RKMS‐ISO8601 standard for depicting date ranges.To indicate the end of an embargo period, use Available. To indicate the start of an embargo period, use Submitted or Accepted, as appropriate.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="Accepted"/>
+      <xs:enumeration value="Available"/>
+      <xs:enumeration value="Collected"/>
+      <xs:enumeration value="Copyrighted"/>
+      <xs:enumeration value="Created"/>
+      <xs:enumeration value="Issued"/>
+      <xs:enumeration value="Other"/>
+      <xs:enumeration value="Submitted"/>
+      <xs:enumeration value="Updated"/>
+      <xs:enumeration value="Valid"/>
+      <xs:enumeration value="Withdrawn"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-descriptionType-v4.xsd

@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+     2013-05 v3.0: Addition of ID to simpleType element, addition of value "Methods"
+     2015-02-12 v4.0: Addition of value "TechnicalInfo"-->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="descriptionType" id="descriptionType">
+    <xs:annotation>
+      <xs:documentation>The type of the description.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="Abstract"/>
+      <xs:enumeration value="Methods"/>
+      <xs:enumeration value="SeriesInformation"/>
+      <xs:enumeration value="TableOfContents"/>
+      <xs:enumeration value="TechnicalInfo"/>
+      <xs:enumeration value="Other"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-funderIdentifierType-v4.xsd

@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2016-05-14 -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="funderIdentifierType" id="funderIdentifierType">
+    <xs:annotation>
+      <xs:documentation>The type of the funderIdentifier.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="ISNI"/>
+      <xs:enumeration value="GRID"/>
+      <xs:enumeration value="Crossref Funder ID"/>
+      <xs:enumeration value="Other"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-nameType-v4.xsd

@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 4.1 - Created 2017-10-23 -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="nameType" id="nameType">
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="Organizational"/>
+      <xs:enumeration value="Personal"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-relatedIdentifierType-v4.xsd

@@ -0,0 +1,34 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+  2013-05 v3.0: Addition of ID to simpleType element; addition of value "PMID"
+  2014-08-20 v3.1: Addition of values "arxiv" and "bibcode"
+  2015-02-12 v4.0 Addition of value "IGSN"
+  2019-02-14 v4.2 Addition of value "w3id" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="relatedIdentifierType" id="relatedIdentifierType">
+    <xs:annotation>
+      <xs:documentation>The type of the RelatedIdentifier.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="ARK"/>
+      <xs:enumeration value="arXiv"/>
+      <xs:enumeration value="bibcode"/>
+      <xs:enumeration value="DOI"/>
+      <xs:enumeration value="EAN13"/>
+      <xs:enumeration value="EISSN"/>
+      <xs:enumeration value="Handle"/>
+      <xs:enumeration value="IGSN"/>
+      <xs:enumeration value="ISBN"/>
+      <xs:enumeration value="ISSN"/>
+      <xs:enumeration value="ISTC"/>
+      <xs:enumeration value="LISSN"/>
+      <xs:enumeration value="LSID"/>
+      <xs:enumeration value="PMID"/>
+      <xs:enumeration value="PURL"/>
+      <xs:enumeration value="UPC"/>
+      <xs:enumeration value="URL"/>
+      <xs:enumeration value="URN"/>
+      <xs:enumeration value="w3id"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-relationType-v4.xsd

@@ -0,0 +1,49 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+  2011-01-13 v1.0 - FZ, TIB, Germany
+  2013-05 v3.0: Addition of ID to simpleType element, addition of values "IsIdenticalTo", "HasMetadata" & "IsMetadataFor"
+  2014-08-20 v3.1: Addition of values "Reviews" & "IsReviewedBy" and "IsDerivedFrom" & "IsSourceOf"
+  2017-10-23 v.4.1: Addition of values "Describes", "IsDescribedBy", "HasVersion", "IsVersionOf", "Requires", "IsRequiredBy"
+  2019-02-14 v.4.2: Addition of values "Obsoletes", "IsObsoletedBy" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="relationType" id="relationType">
+    <xs:annotation>
+      <xs:documentation>Description of the relationship of the resource being registered (A) and the related resource (B).</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="IsCitedBy"/>
+      <xs:enumeration value="Cites"/>
+      <xs:enumeration value="IsSupplementTo"/>
+      <xs:enumeration value="IsSupplementedBy"/>
+      <xs:enumeration value="IsContinuedBy"/>
+      <xs:enumeration value="Continues"/>
+      <xs:enumeration value="IsNewVersionOf"/>
+      <xs:enumeration value="IsPreviousVersionOf"/>
+      <xs:enumeration value="IsPartOf"/>
+      <xs:enumeration value="HasPart"/>
+      <xs:enumeration value="IsReferencedBy"/>
+      <xs:enumeration value="References"/>
+      <xs:enumeration value="IsDocumentedBy"/>
+      <xs:enumeration value="Documents"/>
+      <xs:enumeration value="IsCompiledBy"/>
+      <xs:enumeration value="Compiles"/>
+      <xs:enumeration value="IsVariantFormOf"/>
+      <xs:enumeration value="IsOriginalFormOf"/>
+      <xs:enumeration value="IsIdenticalTo"/>
+      <xs:enumeration value="HasMetadata"/>
+      <xs:enumeration value="IsMetadataFor"/>
+      <xs:enumeration value="Reviews"/>
+      <xs:enumeration value="IsReviewedBy"/>
+      <xs:enumeration value="IsDerivedFrom"/>
+      <xs:enumeration value="IsSourceOf"/>
+      <xs:enumeration value="Describes"/>
+      <xs:enumeration value="IsDescribedBy"/>
+      <xs:enumeration value="HasVersion"/>
+      <xs:enumeration value="IsVersionOf"/>
+      <xs:enumeration value="Requires"/>
+      <xs:enumeration value="IsRequiredBy"/>
+      <xs:enumeration value="Obsoletes"/>
+      <xs:enumeration value="IsObsoletedBy"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-resourceType-v4.xsd

@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+     2013-05 v3.0: Addition of ID to simpleType element; added values "Audiovisual", "Workflow" & "Other"; deleted value "Film"
+     2017-10-23 v4.1: Addition of value "DataPaper" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="resourceType" id="resourceType">
+    <xs:annotation>
+      <xs:documentation>The general type of a resource.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="Audiovisual"/>
+      <xs:enumeration value="Collection"/>
+      <xs:enumeration value="DataPaper"/>
+      <xs:enumeration value="Dataset"/>
+      <xs:enumeration value="Event"/>
+      <xs:enumeration value="Image"/>
+      <xs:enumeration value="InteractiveResource"/>
+      <xs:enumeration value="Model"/>
+      <xs:enumeration value="PhysicalObject"/>
+      <xs:enumeration value="Service"/>
+      <xs:enumeration value="Software"/>
+      <xs:enumeration value="Sound"/>
+      <xs:enumeration value="Text"/>
+      <xs:enumeration value="Workflow"/>
+      <xs:enumeration value="Other"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/datacite-titleType-v4.xsd

@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+  2013-05 v3.0: Addition of ID to simpleType element
+  2015-02-12 v4.0 Added value "Other" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="titleType" id="titleType">
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="AlternativeTitle"/>
+      <xs:enumeration value="Subtitle"/>
+      <xs:enumeration value="TranslatedTitle"/>
+      <xs:enumeration value="Other"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>

data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd

@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Version 1.0 - Created 2011-01-13 - FZ, TIB, Germany
+   2013-05 v3.0: Addition of ID to simpleType element, added values "ResearchGroup" & "Other"
+   2014-08-20 v3.1: Addition of value "DataCurator"
+   2015-05-14 v4.0 dropped value "Funder", use new "funderReference" -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns="http://datacite.org/schema/kernel-4" targetNamespace="http://datacite.org/schema/kernel-4" elementFormDefault="qualified">
+  <xs:simpleType name="contributorType" id="contributorType">
+    <xs:annotation>
+      <xs:documentation>The type of contributor of the resource.</xs:documentation>
+    </xs:annotation>
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="ContactPerson"/>
+      <xs:enumeration value="DataCollector"/>
+      <xs:enumeration value="DataCurator"/>
+      <xs:enumeration value="DataManager"/>
+      <xs:enumeration value="Distributor"/>
+      <xs:enumeration value="Editor"/>
+      <xs:enumeration value="HostingInstitution"/>
+      <xs:enumeration value="Other"/>
+      <xs:enumeration value="Producer"/>
+      <xs:enumeration value="ProjectLeader"/>
+      <xs:enumeration value="ProjectManager"/>
+      <xs:enumeration value="ProjectMember"/>
+      <xs:enumeration value="RegistrationAgency"/>
+      <xs:enumeration value="RegistrationAuthority"/>
+      <xs:enumeration value="RelatedPerson"/>
+      <xs:enumeration value="ResearchGroup"/>
+      <xs:enumeration value="RightsHolder"/>
+      <xs:enumeration value="Researcher"/>
+      <xs:enumeration value="Sponsor"/>
+      <xs:enumeration value="Supervisor"/>
+      <xs:enumeration value="WorkPackageLeader"/>
+    </xs:restriction>
+  </xs:simpleType>
+</xs:schema>