bolognese 1.2.14 → 1.2.15

checksums.yaml

@@ -1,7 +1,7 @@
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+  data.tar.gz: da41ff0a1ffae9a6160fe7cb97ffaa67d8ea3bb412dd31bcc5517ade60b362bb
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data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    bolognese (1.2.14)
+    bolognese (1.2.15)
       activesupport (>= 4.2.5, < 6)
       benchmark_methods (~> 0.7)
       bibtex-ruby (~> 4.1)

data/lib/bolognese/readers/crossref_reader.rb

@@ -205,6 +205,7 @@ module Bolognese
               "name" => [a["surname"], a["given_name"]].join(", "),
               "givenName" => a["given_name"],
               "familyName" => a["surname"],
+              "affiliation" => a["affiliation"],
               "contributorType" => contributor_role == "editor" ? "Editor" : nil }.compact
           else
             { "nameType" => "Organizational",

data/lib/bolognese/version.rb

@@ -1,3 +1,3 @@
 module Bolognese
-  VERSION = "1.2.14"
+  VERSION = "1.2.15"
 end

data/spec/readers/crossref_reader_spec.rb

@@ -22,7 +22,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.url).to eq("https://elifesciences.org/articles/01567")
       expect(subject.creators.length).to eq(5)
-      expect(subject.creators.first).to eq("nameType"=>"Personal", "name"=>"Sankar, Martial", "givenName"=>"Martial", "familyName"=>"Sankar")
+      expect(subject.creators.first).to eq("nameType"=>"Personal", "name"=>"Sankar, Martial", "givenName"=>"Martial", "familyName"=>"Sankar", "affiliation" => "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland")
       expect(subject.rights_list).to eq([{"rightsUri"=>"http://creativecommons.org/licenses/by/3.0"}])
       expect(subject.titles).to eq([{"title"=>"Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth"}])
       expect(subject.dates).to eq([{"date"=>"2014-02-11", "dateType"=>"Issued"}, {"date"=>"2018-08-23T13:41:49Z", "dateType"=>"Updated"}])
@@ -112,7 +112,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.url).to eq("http://www.hindawi.com/journals/pm/2012/291294/")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(7)
-      expect(subject.creators[2]).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2043-4925", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Hernandez, Beatriz", "givenName"=>"Beatriz", "familyName"=>"Hernandez")
+      expect(subject.creators[2]).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2043-4925", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Hernandez, Beatriz", "givenName"=>"Beatriz", "familyName"=>"Hernandez", "affiliation" => ["War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA", "Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA"])
       expect(subject.rights_list).to eq([{"rightsUri"=>"http://creativecommons.org/licenses/by/3.0"}])
       expect(subject.titles).to eq([{"title"=>"Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers"}])
       expect(subject.dates).to eq([{"date"=>"2012", "dateType"=>"Issued"}, {"date"=>"2016-08-02T18:42:41Z", "dateType"=>"Updated"}])
@@ -203,7 +203,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.url).to eq("https://www.fs.usda.gov/rds/archive/Product/RDS-2018-0001")
       expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"Dataset", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
       expect(subject.creators.length).to eq(4)
-      expect(subject.creators.first).to eq("familyName" => "Ribic","givenName" => "Christine A.","name" => "Ribic, Christine A.","nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2583-1778", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}],"nameType" => "Personal")
+      expect(subject.creators.first).to eq("familyName" => "Ribic","givenName" => "Christine A.","name" => "Ribic, Christine A.","affiliation" => "U.S. Geological Survey","nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2583-1778", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}],"nameType" => "Personal")
       expect(subject.titles).to eq([{"title"=>"Fledging times of grassland birds"}])
       expect(subject.descriptions).to be_empty
       expect(subject.dates).to eq([{"date"=>"2017-08-09", "dateType"=>"Issued"}, {"date"=>"2018-07-13T19:35:20Z", "dateType"=>"Updated"}])
@@ -250,7 +250,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.identifiers).to eq([{"identifier"=>"https://doi.org/10.4018/978-1-4666-1891-6.ch004", "identifierType"=>"DOI"}])
       expect(subject.url).to eq("http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/978-1-4666-1891-6.ch004")
       expect(subject.types).to eq("bibtex"=>"inbook", "citeproc"=>"chapter", "resourceType"=>"BookChapter", "resourceTypeGeneral"=>"Text", "ris"=>"CHAP", "schemaOrg"=>"Chapter")
-      expect(subject.creators).to eq("familyName"=>"Bichot", "givenName"=>"Charles-Edmond", "name"=>"Bichot, Charles-Edmond", "nameType"=>"Personal")
+      expect(subject.creators).to eq("familyName"=>"Bichot", "givenName"=>"Charles-Edmond", "name"=>"Bichot, Charles-Edmond", "affiliation" => "Université de Lyon, France", "nameType"=>"Personal")
       expect(subject.titles).to eq([{"title"=>"Unsupervised and Supervised Image Segmentation Using Graph Partitioning"}])
       expect(subject.dates).to eq([{"date"=>"2012-08-08", "dateType"=>"Issued"}, {"date"=>"2019-07-02T17:17:21Z", "dateType"=>"Updated"}])
       expect(subject.publication_year).to eq("2012")
@@ -407,7 +407,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.url).to eq("http://doi.wiley.com/10.1111/nph.14619")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(3)
-      expect(subject.creators.first).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0002-4156-3761", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Dissmeyer, Nico", "givenName"=>"Nico", "familyName"=>"Dissmeyer")
+      expect(subject.creators.first).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0002-4156-3761", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Dissmeyer, Nico", "givenName"=>"Nico", "familyName"=>"Dissmeyer", "affiliation" => ["Independent Junior Research Group on Protein Recognition and Degradation; Leibniz Institute of Plant Biochemistry (IPB); Weinberg 3 Halle (Saale) D-06120 Germany", "ScienceCampus Halle - Plant-based Bioeconomy; Betty-Heimann-Strasse 3 Halle (Saale) D-06120 Germany"])
       expect(subject.titles).to eq([{"title"=>"Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway"}])
       expect(subject.rights_list).to eq([{"rightsUri"=>"http://doi.wiley.com/10.1002/tdm_license_1.1"}, {"rightsUri"=>"http://onlinelibrary.wiley.com/termsAndConditions"}])
       expect(subject.dates).to eq([{"date"=>"2018-05", "dateType"=>"Issued"}, {"date"=>"2018-08-07T05:52:14Z", "dateType"=>"Updated"}])

data/spec/writers/crosscite_writer_spec.rb

@@ -23,7 +23,7 @@ describe Bolognese::Metadata, vcr: true do
       crosscite = JSON.parse(subject.crosscite)
       expect(crosscite.fetch("types")).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(crosscite.fetch("creators").count).to eq(7)
-      expect(crosscite.fetch("creators")[2]).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2043-4925", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Hernandez, Beatriz", "givenName"=>"Beatriz", "familyName"=>"Hernandez")
+      expect(crosscite.fetch("creators")[2]).to eq("nameType"=>"Personal", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-2043-4925", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name"=>"Hernandez, Beatriz", "givenName"=>"Beatriz", "familyName"=>"Hernandez", "affiliation" => ["War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA", "Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA"])
     end
 
     # it "with editor" do

data/spec/writers/datacite_json_writer_spec.rb

@@ -23,7 +23,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(datacite.fetch("url")).to eq("http://www.hindawi.com/journals/pm/2012/291294/")
       expect(datacite.fetch("types")).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(datacite.fetch("creators").length).to eq(7)
-      expect(datacite.fetch("creators").first).to eq("nameType"=>"Personal", "name"=>"Thanassi, Wendy", "givenName"=>"Wendy", "familyName"=>"Thanassi")
+      expect(datacite.fetch("creators").first).to eq("nameType"=>"Personal", "name"=>"Thanassi, Wendy", "givenName"=>"Wendy", "familyName"=>"Thanassi", "affiliation" => ["Department of Medicine, Veterans Affairs Palo Alto Health Care System, 3801 Miranda Avenue MC-, Palo Alto, CA 94304-1207, USA", "Occupational Health Strategic Health Care Group, Office of Public Health, Veterans Health Administration, Washington, DC 20006, USA", "Division of Emergency Medicine, Stanford University School of Medicine, Stanford, CA 94304, USA", "War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA"])
     end
 
     it "Crossref DOI" do

data/spec/writers/datacite_writer_spec.rb

@@ -29,6 +29,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(datacite.dig("creators", "creator")[2]).to eq("creatorName" => {"__content__"=>"Hernandez, Beatriz", "nameType"=>"Personal"},
         "familyName" => "Hernandez",
         "givenName" => "Beatriz",
+        "affiliation" => ["War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA", "Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA"],
         "nameIdentifier" => {"nameIdentifierScheme"=>"ORCID", "schemeURI"=>"https://orcid.org", "__content__"=>"https://orcid.org/0000-0003-2043-4925"})
     end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bolognese
 version: !ruby/object:Gem::Version
-  version: 1.2.14
+  version: 1.2.15
 platform: ruby
 authors:
 - Martin Fenner