bolognese 0.9.24 → 0.9.25
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- checksums.yaml +4 -4
- data/Gemfile.lock +2 -2
- data/lib/bolognese/utils.rb +3 -3
- data/lib/bolognese/version.rb +1 -1
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml +94 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml +94 -0
- data/spec/utils_spec.rb +12 -0
- metadata +3 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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SHA1:
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3
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-
metadata.gz:
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4
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data.tar.gz:
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3
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+
metadata.gz: bc915e15f8cc67f07df97f07940c1fd42f36bfde
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4
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+
data.tar.gz: e5f7a9fcb0c71a382c108f46dd8b8e928ef27c2b
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 50a3c57841b12442ff12941e27122290ee4d0662b6d636ded7b11883caa1635580f4c15946133bb4d520f9e82078e85e054a2bd239c46b4652b6e87018f923e2
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7
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+
data.tar.gz: 3c316919e69e2a937cfedbca564326e6d2c4a1f9eb21704bffa80848ce2772f329718c08441af570a7d8a6fe593f47b4496d13e886b425f9c5045e8b96fd82fa
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data/Gemfile.lock
CHANGED
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@@ -1,7 +1,7 @@
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PATH
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remote: .
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specs:
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-
bolognese (0.9.
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+
bolognese (0.9.25)
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5
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activesupport (>= 4.2.5, < 6)
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benchmark_methods (~> 0.7)
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bibtex-ruby (~> 4.1)
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@@ -177,4 +177,4 @@ DEPENDENCIES
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webmock (~> 1.22, >= 1.22.3)
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BUNDLED WITH
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-
1.
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1.15.1
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data/lib/bolognese/utils.rb
CHANGED
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@@ -264,15 +264,15 @@ module Bolognese
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end
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def orcid_from_url(url)
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-
Array(/\
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Array(/\A:(http|https)\/\/orcid\.org\/(.+)/.match(url)).last
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end
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def orcid_as_url(orcid)
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-
"
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"https://orcid.org/#{orcid}" if orcid.present?
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end
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def validate_orcid(orcid)
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-
orcid = Array(/\A(?:http:\/\/orcid\.org\/)?(\d{4}[[:space:]-]\d{4}[[:space:]-]\d{4}[[:space:]-]\d{3}[0-9X]+)\z/.match(orcid)).last
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275
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+
orcid = Array(/\A(?:(http|https):\/\/(www\.)?orcid\.org\/)?(\d{4}[[:space:]-]\d{4}[[:space:]-]\d{4}[[:space:]-]\d{3}[0-9X]+)\z/.match(orcid)).last
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orcid.gsub(/[[:space:]]/, "-") if orcid.present?
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end
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data/lib/bolognese/version.rb
CHANGED
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---
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http_interactions:
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- request:
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method: get
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uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
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body:
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encoding: US-ASCII
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string: ''
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headers:
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User-Agent:
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- Maremma - https://github.com/datacite/maremma
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Accept:
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- text/xml
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response:
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status:
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code: 200
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message: ''
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headers:
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Server:
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- Apache-Coyote/1.1
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Crossref-Deployment-Name:
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- qs4-1
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Date:
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body:
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encoding: UTF-8
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string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<doi_records>\r\n <doi_record
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owner=\"10.1101\" timestamp=\"2016-12-29 01:10:20\">\r\n <crossref>\r\n
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\ <posted_content type=\"preprint\" language=\"en\" metadata_distribution_opts=\"any\">\r\n
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\ <group_title>Scientific Communication and Education</group_title>\r\n
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\ <contributors>\r\n <person_name contributor_role=\"author\"
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sequence=\"first\">\r\n <given_name>Martin</given_name>\r\n <surname>Fenner</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0003-1419-2405</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Merc?</given_name>\r\n <surname>Crosas</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0003-1304-1939</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Jeffrey</given_name>\r\n <surname>Grethe</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0001-5212-7052</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>David</given_name>\r\n <surname>Kennedy</surname>\r\n
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48
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\ <ORCID>http://orcid.org/0000-0002-9377-0797</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Henning</given_name>\r\n <surname>Hermjakob</surname>\r\n
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51
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\ <ORCID>http://orcid.org/0000-0001-8479-0262</ORCID>\r\n </person_name>\r\n
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Philippe</given_name>\r\n <surname>Rocca-Serra</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0001-9853-5668</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Robin</given_name>\r\n <surname>Berjon</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0002-1731-5346</ORCID>\r\n </person_name>\r\n
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Sebastian</given_name>\r\n <surname>Karcher</surname>\r\n
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60
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\ <ORCID>http://orcid.org/0000-0001-8249-7388</ORCID>\r\n </person_name>\r\n
|
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61
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Maryann</given_name>\r\n <surname>Martone</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0002-8406-3871</ORCID>\r\n </person_name>\r\n
|
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64
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
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65
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\ <given_name>Timothy</given_name>\r\n <surname>Clark</surname>\r\n
|
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66
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\ <ORCID>http://orcid.org/0000-0003-4060-7360</ORCID>\r\n </person_name>\r\n
|
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67
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+
\ </contributors>\r\n <titles>\r\n <title>A Data Citation
|
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68
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+
Roadmap for Scholarly Data Repositories</title>\r\n </titles>\r\n <posted_date>\r\n
|
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\ <month>12</month>\r\n <day>28</day>\r\n <year>2016</year>\r\n
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\ </posted_date>\r\n <acceptance_date>\r\n <month>12</month>\r\n
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\ <day>28</day>\r\n <year>2016</year>\r\n </acceptance_date>\r\n
|
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\ <institution>\r\n <institution_name>bioRxiv</institution_name>\r\n
|
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\ </institution>\r\n <item_number item_number_type=\"pisa\">biorxiv;097196v1</item_number>\r\n
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\ <abstract>\r\n <p>This article presents a practical roadmap
|
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75
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+
for scholarly data repositories to implement data citation in accordance with
|
|
76
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+
the Joint Declaration of Data Citation Principles (Data Citation Synthesis
|
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77
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+
Group, 2014), a synopsis and harmonization of the recommendations of major
|
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78
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+
science policy bodies. The roadmap was developed by the Repositories Early
|
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79
|
+
Adopters Expert Group, part of the Data Citation Implementation Pilot (DCIP)
|
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80
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+
project (FORCE11, 2015), an initiative of FORCE11.org and the NIH BioCADDIE
|
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81
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+
(2016) program. The roadmap makes 11 specific recommendations, grouped into
|
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82
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+
three phases of implementation: a) required steps needed to support the Joint
|
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83
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+
Declaration of Data Citation Principles, b) recommended steps that facilitate
|
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+
article/data publication workflows, and c) optional steps that further improve
|
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data citation support provided by data repositories.</p>\r\n </abstract>\r\n
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\ <doi_data>\r\n <doi>10.1101/097196</doi>\r\n <timestamp>2016122822100649000</timestamp>\r\n
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\ <resource>http://biorxiv.org/lookup/doi/10.1101/097196</resource>\r\n
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\ <collection property=\"crawler-based\">\r\n <item crawler=\"iParadigms\">\r\n
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\ <resource>https://syndication.highwire.org/content/doi/10.1101/097196</resource>\r\n
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\ </item>\r\n </collection>\r\n </doi_data>\r\n
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\ </posted_content>\r\n </crossref>\r\n </doi_record>\r\n</doi_records>"
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http_version:
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recorded_at: Tue, 20 Jun 2017 06:48:35 GMT
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recorded_with: VCR 3.0.3
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---
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http_interactions:
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- request:
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method: get
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uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
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body:
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encoding: US-ASCII
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string: ''
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headers:
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User-Agent:
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- Maremma - https://github.com/datacite/maremma
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Accept:
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- text/xml
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response:
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status:
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code: 200
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message: ''
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headers:
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Server:
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- Apache-Coyote/1.1
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Crossref-Deployment-Name:
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encoding: UTF-8
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string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<doi_records>\r\n <doi_record
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owner=\"10.1101\" timestamp=\"2016-12-29 01:10:20\">\r\n <crossref>\r\n
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\ <posted_content type=\"preprint\" language=\"en\" metadata_distribution_opts=\"any\">\r\n
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\ <group_title>Scientific Communication and Education</group_title>\r\n
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\ <contributors>\r\n <person_name contributor_role=\"author\"
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sequence=\"first\">\r\n <given_name>Martin</given_name>\r\n <surname>Fenner</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0003-1419-2405</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Merc?</given_name>\r\n <surname>Crosas</surname>\r\n
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\ <ORCID>http://orcid.org/0000-0003-1304-1939</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Jeffrey</given_name>\r\n <surname>Grethe</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0001-5212-7052</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>David</given_name>\r\n <surname>Kennedy</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0002-9377-0797</ORCID>\r\n </person_name>\r\n
|
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Henning</given_name>\r\n <surname>Hermjakob</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0001-8479-0262</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Philippe</given_name>\r\n <surname>Rocca-Serra</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0001-9853-5668</ORCID>\r\n </person_name>\r\n
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Robin</given_name>\r\n <surname>Berjon</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0002-1731-5346</ORCID>\r\n </person_name>\r\n
|
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
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\ <given_name>Sebastian</given_name>\r\n <surname>Karcher</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0001-8249-7388</ORCID>\r\n </person_name>\r\n
|
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Maryann</given_name>\r\n <surname>Martone</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0002-8406-3871</ORCID>\r\n </person_name>\r\n
|
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\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
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\ <given_name>Timothy</given_name>\r\n <surname>Clark</surname>\r\n
|
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\ <ORCID>http://orcid.org/0000-0003-4060-7360</ORCID>\r\n </person_name>\r\n
|
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\ </contributors>\r\n <titles>\r\n <title>A Data Citation
|
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+
Roadmap for Scholarly Data Repositories</title>\r\n </titles>\r\n <posted_date>\r\n
|
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\ <month>12</month>\r\n <day>28</day>\r\n <year>2016</year>\r\n
|
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\ </posted_date>\r\n <acceptance_date>\r\n <month>12</month>\r\n
|
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\ <day>28</day>\r\n <year>2016</year>\r\n </acceptance_date>\r\n
|
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\ <institution>\r\n <institution_name>bioRxiv</institution_name>\r\n
|
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\ </institution>\r\n <item_number item_number_type=\"pisa\">biorxiv;097196v1</item_number>\r\n
|
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+
\ <abstract>\r\n <p>This article presents a practical roadmap
|
|
75
|
+
for scholarly data repositories to implement data citation in accordance with
|
|
76
|
+
the Joint Declaration of Data Citation Principles (Data Citation Synthesis
|
|
77
|
+
Group, 2014), a synopsis and harmonization of the recommendations of major
|
|
78
|
+
science policy bodies. The roadmap was developed by the Repositories Early
|
|
79
|
+
Adopters Expert Group, part of the Data Citation Implementation Pilot (DCIP)
|
|
80
|
+
project (FORCE11, 2015), an initiative of FORCE11.org and the NIH BioCADDIE
|
|
81
|
+
(2016) program. The roadmap makes 11 specific recommendations, grouped into
|
|
82
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+
three phases of implementation: a) required steps needed to support the Joint
|
|
83
|
+
Declaration of Data Citation Principles, b) recommended steps that facilitate
|
|
84
|
+
article/data publication workflows, and c) optional steps that further improve
|
|
85
|
+
data citation support provided by data repositories.</p>\r\n </abstract>\r\n
|
|
86
|
+
\ <doi_data>\r\n <doi>10.1101/097196</doi>\r\n <timestamp>2016122822100649000</timestamp>\r\n
|
|
87
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+
\ <resource>http://biorxiv.org/lookup/doi/10.1101/097196</resource>\r\n
|
|
88
|
+
\ <collection property=\"crawler-based\">\r\n <item crawler=\"iParadigms\">\r\n
|
|
89
|
+
\ <resource>https://syndication.highwire.org/content/doi/10.1101/097196</resource>\r\n
|
|
90
|
+
\ </item>\r\n </collection>\r\n </doi_data>\r\n
|
|
91
|
+
\ </posted_content>\r\n </crossref>\r\n </doi_record>\r\n</doi_records>"
|
|
92
|
+
http_version:
|
|
93
|
+
recorded_at: Tue, 20 Jun 2017 06:48:35 GMT
|
|
94
|
+
recorded_with: VCR 3.0.3
|
data/spec/utils_spec.rb
CHANGED
|
@@ -38,12 +38,24 @@ describe Bolognese::Metadata, vcr: true do
|
|
|
38
38
|
expect(response).to eq("0000-0002-2590-225X")
|
|
39
39
|
end
|
|
40
40
|
|
|
41
|
+
it "validate_orcid https" do
|
|
42
|
+
orcid = "https://orcid.org/0000-0002-2590-225X"
|
|
43
|
+
response = subject.validate_orcid(orcid)
|
|
44
|
+
expect(response).to eq("0000-0002-2590-225X")
|
|
45
|
+
end
|
|
46
|
+
|
|
41
47
|
it "validate_orcid id" do
|
|
42
48
|
orcid = "0000-0002-2590-225X"
|
|
43
49
|
response = subject.validate_orcid(orcid)
|
|
44
50
|
expect(response).to eq("0000-0002-2590-225X")
|
|
45
51
|
end
|
|
46
52
|
|
|
53
|
+
it "validate_orcid www" do
|
|
54
|
+
orcid = "http://www.orcid.org/0000-0002-2590-225X"
|
|
55
|
+
response = subject.validate_orcid(orcid)
|
|
56
|
+
expect(response).to eq("0000-0002-2590-225X")
|
|
57
|
+
end
|
|
58
|
+
|
|
47
59
|
it "validate_orcid with spaces" do
|
|
48
60
|
orcid = "0000 0002 1394 3097"
|
|
49
61
|
response = subject.validate_orcid(orcid)
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: bolognese
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.9.
|
|
4
|
+
version: 0.9.25
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Martin Fenner
|
|
@@ -684,9 +684,11 @@ files:
|
|
|
684
684
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/sanitize/should_remove_a_tags.yml
|
|
685
685
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/to_schema_org/with_id.yml
|
|
686
686
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml
|
|
687
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml
|
|
687
688
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml
|
|
688
689
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml
|
|
689
690
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml
|
|
691
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml
|
|
690
692
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml
|
|
691
693
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml
|
|
692
694
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml
|