bolognese 0.9.23 → 0.9.24
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- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/lib/bolognese/utils.rb +2 -1
- data/lib/bolognese/version.rb +1 -1
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml +94 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml +144 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml +94 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml +94 -0
- data/spec/utils_spec.rb +26 -0
- metadata +5 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 6fb3aac15f0e996209a730e15e583600173ad156
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4
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+
data.tar.gz: ff148a44fe2598ee441d0b34e204b5a58c7b274e
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: b899a7ad3d6149292b4408a69fa044e475dcffcd0371b3cb73fe09365d7b9d1cb420b0062f43ace11d18ebb626494357ee3b45d6a987522eb0a9e603aff6d8b5
|
|
7
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+
data.tar.gz: e9f76822078b4689bd75aeaf6e989a0f83d35197e25e5e4d88c97ecadcadf9f1df3a1c531bdad306f97edf69e3237e142143fee71d13d198850b12f593b4d9be
|
data/Gemfile.lock
CHANGED
data/lib/bolognese/utils.rb
CHANGED
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@@ -272,7 +272,8 @@ module Bolognese
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272
272
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end
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273
273
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274
274
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def validate_orcid(orcid)
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275
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-
Array(/\A(?:http:\/\/orcid\.org\/)?(\d{4}
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275
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+
orcid = Array(/\A(?:http:\/\/orcid\.org\/)?(\d{4}[[:space:]-]\d{4}[[:space:]-]\d{4}[[:space:]-]\d{3}[0-9X]+)\z/.match(orcid)).last
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276
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+
orcid.gsub(/[[:space:]]/, "-") if orcid.present?
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276
277
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end
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277
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278
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def validate_url(str)
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data/lib/bolognese/version.rb
CHANGED
|
@@ -0,0 +1,94 @@
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1
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+
---
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http_interactions:
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- request:
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+
method: get
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5
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+
uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
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6
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+
body:
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7
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+
encoding: US-ASCII
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8
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+
string: ''
|
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9
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+
headers:
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10
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+
User-Agent:
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11
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+
- Maremma - https://github.com/datacite/maremma
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12
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+
Accept:
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13
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+
- text/xml
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14
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+
response:
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15
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+
status:
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code: 200
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message: ''
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headers:
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+
Server:
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20
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+
- Apache-Coyote/1.1
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21
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+
Crossref-Deployment-Name:
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22
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+
- qs4-1
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23
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+
Content-Type:
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24
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+
- text/xml;charset=UTF-8
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25
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+
Content-Language:
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26
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+
- en-US
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27
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+
Date:
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28
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+
- Tue, 20 Jun 2017 06:10:06 GMT
|
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29
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+
Connection:
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- close
|
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+
body:
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32
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+
encoding: UTF-8
|
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33
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+
string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<doi_records>\r\n <doi_record
|
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34
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+
owner=\"10.1101\" timestamp=\"2016-12-29 01:10:20\">\r\n <crossref>\r\n
|
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35
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+
\ <posted_content type=\"preprint\" language=\"en\" metadata_distribution_opts=\"any\">\r\n
|
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36
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+
\ <group_title>Scientific Communication and Education</group_title>\r\n
|
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37
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+
\ <contributors>\r\n <person_name contributor_role=\"author\"
|
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38
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+
sequence=\"first\">\r\n <given_name>Martin</given_name>\r\n <surname>Fenner</surname>\r\n
|
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39
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+
\ <ORCID>http://orcid.org/0000-0003-1419-2405</ORCID>\r\n </person_name>\r\n
|
|
40
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
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41
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+
\ <given_name>Merc?</given_name>\r\n <surname>Crosas</surname>\r\n
|
|
42
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+
\ <ORCID>http://orcid.org/0000-0003-1304-1939</ORCID>\r\n </person_name>\r\n
|
|
43
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+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
44
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+
\ <given_name>Jeffrey</given_name>\r\n <surname>Grethe</surname>\r\n
|
|
45
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+
\ <ORCID>http://orcid.org/0000-0001-5212-7052</ORCID>\r\n </person_name>\r\n
|
|
46
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
47
|
+
\ <given_name>David</given_name>\r\n <surname>Kennedy</surname>\r\n
|
|
48
|
+
\ <ORCID>http://orcid.org/0000-0002-9377-0797</ORCID>\r\n </person_name>\r\n
|
|
49
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
50
|
+
\ <given_name>Henning</given_name>\r\n <surname>Hermjakob</surname>\r\n
|
|
51
|
+
\ <ORCID>http://orcid.org/0000-0001-8479-0262</ORCID>\r\n </person_name>\r\n
|
|
52
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
53
|
+
\ <given_name>Philippe</given_name>\r\n <surname>Rocca-Serra</surname>\r\n
|
|
54
|
+
\ <ORCID>http://orcid.org/0000-0001-9853-5668</ORCID>\r\n </person_name>\r\n
|
|
55
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
56
|
+
\ <given_name>Robin</given_name>\r\n <surname>Berjon</surname>\r\n
|
|
57
|
+
\ <ORCID>http://orcid.org/0000-0002-1731-5346</ORCID>\r\n </person_name>\r\n
|
|
58
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
59
|
+
\ <given_name>Sebastian</given_name>\r\n <surname>Karcher</surname>\r\n
|
|
60
|
+
\ <ORCID>http://orcid.org/0000-0001-8249-7388</ORCID>\r\n </person_name>\r\n
|
|
61
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
62
|
+
\ <given_name>Maryann</given_name>\r\n <surname>Martone</surname>\r\n
|
|
63
|
+
\ <ORCID>http://orcid.org/0000-0002-8406-3871</ORCID>\r\n </person_name>\r\n
|
|
64
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
65
|
+
\ <given_name>Timothy</given_name>\r\n <surname>Clark</surname>\r\n
|
|
66
|
+
\ <ORCID>http://orcid.org/0000-0003-4060-7360</ORCID>\r\n </person_name>\r\n
|
|
67
|
+
\ </contributors>\r\n <titles>\r\n <title>A Data Citation
|
|
68
|
+
Roadmap for Scholarly Data Repositories</title>\r\n </titles>\r\n <posted_date>\r\n
|
|
69
|
+
\ <month>12</month>\r\n <day>28</day>\r\n <year>2016</year>\r\n
|
|
70
|
+
\ </posted_date>\r\n <acceptance_date>\r\n <month>12</month>\r\n
|
|
71
|
+
\ <day>28</day>\r\n <year>2016</year>\r\n </acceptance_date>\r\n
|
|
72
|
+
\ <institution>\r\n <institution_name>bioRxiv</institution_name>\r\n
|
|
73
|
+
\ </institution>\r\n <item_number item_number_type=\"pisa\">biorxiv;097196v1</item_number>\r\n
|
|
74
|
+
\ <abstract>\r\n <p>This article presents a practical roadmap
|
|
75
|
+
for scholarly data repositories to implement data citation in accordance with
|
|
76
|
+
the Joint Declaration of Data Citation Principles (Data Citation Synthesis
|
|
77
|
+
Group, 2014), a synopsis and harmonization of the recommendations of major
|
|
78
|
+
science policy bodies. The roadmap was developed by the Repositories Early
|
|
79
|
+
Adopters Expert Group, part of the Data Citation Implementation Pilot (DCIP)
|
|
80
|
+
project (FORCE11, 2015), an initiative of FORCE11.org and the NIH BioCADDIE
|
|
81
|
+
(2016) program. The roadmap makes 11 specific recommendations, grouped into
|
|
82
|
+
three phases of implementation: a) required steps needed to support the Joint
|
|
83
|
+
Declaration of Data Citation Principles, b) recommended steps that facilitate
|
|
84
|
+
article/data publication workflows, and c) optional steps that further improve
|
|
85
|
+
data citation support provided by data repositories.</p>\r\n </abstract>\r\n
|
|
86
|
+
\ <doi_data>\r\n <doi>10.1101/097196</doi>\r\n <timestamp>2016122822100649000</timestamp>\r\n
|
|
87
|
+
\ <resource>http://biorxiv.org/lookup/doi/10.1101/097196</resource>\r\n
|
|
88
|
+
\ <collection property=\"crawler-based\">\r\n <item crawler=\"iParadigms\">\r\n
|
|
89
|
+
\ <resource>https://syndication.highwire.org/content/doi/10.1101/097196</resource>\r\n
|
|
90
|
+
\ </item>\r\n </collection>\r\n </doi_data>\r\n
|
|
91
|
+
\ </posted_content>\r\n </crossref>\r\n </doi_record>\r\n</doi_records>"
|
|
92
|
+
http_version:
|
|
93
|
+
recorded_at: Tue, 20 Jun 2017 05:06:47 GMT
|
|
94
|
+
recorded_with: VCR 3.0.3
|
|
@@ -0,0 +1,144 @@
|
|
|
1
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+
---
|
|
2
|
+
http_interactions:
|
|
3
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+
- request:
|
|
4
|
+
method: get
|
|
5
|
+
uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
|
|
6
|
+
body:
|
|
7
|
+
encoding: US-ASCII
|
|
8
|
+
string: ''
|
|
9
|
+
headers:
|
|
10
|
+
User-Agent:
|
|
11
|
+
- Maremma - https://github.com/datacite/maremma
|
|
12
|
+
Accept:
|
|
13
|
+
- text/xml
|
|
14
|
+
response:
|
|
15
|
+
status:
|
|
16
|
+
code: 200
|
|
17
|
+
message: ''
|
|
18
|
+
headers:
|
|
19
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+
Server:
|
|
20
|
+
- Apache-Coyote/1.1
|
|
21
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+
Crossref-Deployment-Name:
|
|
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+
- cr7-1
|
|
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+
Content-Type:
|
|
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+
- text/xml;charset=UTF-8
|
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Content-Language:
|
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+
- en-US
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+
Date:
|
|
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+
- Tue, 20 Jun 2017 05:06:47 GMT
|
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+
Connection:
|
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+
- close
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+
body:
|
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+
encoding: ASCII-8BIT
|
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+
string: !binary |-
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|
+
\ <given_name>David</given_name>\r\n <surname>Kennedy</surname>\r\n
|
|
48
|
+
\ <ORCID>http://orcid.org/0000-0002-9377-0797</ORCID>\r\n </person_name>\r\n
|
|
49
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
50
|
+
\ <given_name>Henning</given_name>\r\n <surname>Hermjakob</surname>\r\n
|
|
51
|
+
\ <ORCID>http://orcid.org/0000-0001-8479-0262</ORCID>\r\n </person_name>\r\n
|
|
52
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
53
|
+
\ <given_name>Philippe</given_name>\r\n <surname>Rocca-Serra</surname>\r\n
|
|
54
|
+
\ <ORCID>http://orcid.org/0000-0001-9853-5668</ORCID>\r\n </person_name>\r\n
|
|
55
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
56
|
+
\ <given_name>Robin</given_name>\r\n <surname>Berjon</surname>\r\n
|
|
57
|
+
\ <ORCID>http://orcid.org/0000-0002-1731-5346</ORCID>\r\n </person_name>\r\n
|
|
58
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
59
|
+
\ <given_name>Sebastian</given_name>\r\n <surname>Karcher</surname>\r\n
|
|
60
|
+
\ <ORCID>http://orcid.org/0000-0001-8249-7388</ORCID>\r\n </person_name>\r\n
|
|
61
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
62
|
+
\ <given_name>Maryann</given_name>\r\n <surname>Martone</surname>\r\n
|
|
63
|
+
\ <ORCID>http://orcid.org/0000-0002-8406-3871</ORCID>\r\n </person_name>\r\n
|
|
64
|
+
\ <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
|
|
65
|
+
\ <given_name>Timothy</given_name>\r\n <surname>Clark</surname>\r\n
|
|
66
|
+
\ <ORCID>http://orcid.org/0000-0003-4060-7360</ORCID>\r\n </person_name>\r\n
|
|
67
|
+
\ </contributors>\r\n <titles>\r\n <title>A Data Citation
|
|
68
|
+
Roadmap for Scholarly Data Repositories</title>\r\n </titles>\r\n <posted_date>\r\n
|
|
69
|
+
\ <month>12</month>\r\n <day>28</day>\r\n <year>2016</year>\r\n
|
|
70
|
+
\ </posted_date>\r\n <acceptance_date>\r\n <month>12</month>\r\n
|
|
71
|
+
\ <day>28</day>\r\n <year>2016</year>\r\n </acceptance_date>\r\n
|
|
72
|
+
\ <institution>\r\n <institution_name>bioRxiv</institution_name>\r\n
|
|
73
|
+
\ </institution>\r\n <item_number item_number_type=\"pisa\">biorxiv;097196v1</item_number>\r\n
|
|
74
|
+
\ <abstract>\r\n <p>This article presents a practical roadmap
|
|
75
|
+
for scholarly data repositories to implement data citation in accordance with
|
|
76
|
+
the Joint Declaration of Data Citation Principles (Data Citation Synthesis
|
|
77
|
+
Group, 2014), a synopsis and harmonization of the recommendations of major
|
|
78
|
+
science policy bodies. The roadmap was developed by the Repositories Early
|
|
79
|
+
Adopters Expert Group, part of the Data Citation Implementation Pilot (DCIP)
|
|
80
|
+
project (FORCE11, 2015), an initiative of FORCE11.org and the NIH BioCADDIE
|
|
81
|
+
(2016) program. The roadmap makes 11 specific recommendations, grouped into
|
|
82
|
+
three phases of implementation: a) required steps needed to support the Joint
|
|
83
|
+
Declaration of Data Citation Principles, b) recommended steps that facilitate
|
|
84
|
+
article/data publication workflows, and c) optional steps that further improve
|
|
85
|
+
data citation support provided by data repositories.</p>\r\n </abstract>\r\n
|
|
86
|
+
\ <doi_data>\r\n <doi>10.1101/097196</doi>\r\n <timestamp>2016122822100649000</timestamp>\r\n
|
|
87
|
+
\ <resource>http://biorxiv.org/lookup/doi/10.1101/097196</resource>\r\n
|
|
88
|
+
\ <collection property=\"crawler-based\">\r\n <item crawler=\"iParadigms\">\r\n
|
|
89
|
+
\ <resource>https://syndication.highwire.org/content/doi/10.1101/097196</resource>\r\n
|
|
90
|
+
\ </item>\r\n </collection>\r\n </doi_data>\r\n
|
|
91
|
+
\ </posted_content>\r\n </crossref>\r\n </doi_record>\r\n</doi_records>"
|
|
92
|
+
http_version:
|
|
93
|
+
recorded_at: Tue, 20 Jun 2017 05:06:47 GMT
|
|
94
|
+
recorded_with: VCR 3.0.3
|
data/spec/utils_spec.rb
CHANGED
|
@@ -31,6 +31,32 @@ describe Bolognese::Metadata, vcr: true do
|
|
|
31
31
|
end
|
|
32
32
|
end
|
|
33
33
|
|
|
34
|
+
context "validate_orcid" do
|
|
35
|
+
it "validate_orcid" do
|
|
36
|
+
orcid = "http://orcid.org/0000-0002-2590-225X"
|
|
37
|
+
response = subject.validate_orcid(orcid)
|
|
38
|
+
expect(response).to eq("0000-0002-2590-225X")
|
|
39
|
+
end
|
|
40
|
+
|
|
41
|
+
it "validate_orcid id" do
|
|
42
|
+
orcid = "0000-0002-2590-225X"
|
|
43
|
+
response = subject.validate_orcid(orcid)
|
|
44
|
+
expect(response).to eq("0000-0002-2590-225X")
|
|
45
|
+
end
|
|
46
|
+
|
|
47
|
+
it "validate_orcid with spaces" do
|
|
48
|
+
orcid = "0000 0002 1394 3097"
|
|
49
|
+
response = subject.validate_orcid(orcid)
|
|
50
|
+
expect(response).to eq("0000-0002-1394-3097")
|
|
51
|
+
end
|
|
52
|
+
|
|
53
|
+
it "validate_orcid wrong id" do
|
|
54
|
+
orcid = "0000-0002-1394-309"
|
|
55
|
+
response = subject.validate_orcid(orcid)
|
|
56
|
+
expect(response).to be_nil
|
|
57
|
+
end
|
|
58
|
+
end
|
|
59
|
+
|
|
34
60
|
context "parse attributes" do
|
|
35
61
|
it "string" do
|
|
36
62
|
element = "10.5061/DRYAD.8515"
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: bolognese
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.9.
|
|
4
|
+
version: 0.9.24
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Martin Fenner
|
|
@@ -683,6 +683,10 @@ files:
|
|
|
683
683
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/sanitize/should_only_keep_specific_tags.yml
|
|
684
684
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/sanitize/should_remove_a_tags.yml
|
|
685
685
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/to_schema_org/with_id.yml
|
|
686
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml
|
|
687
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml
|
|
688
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml
|
|
689
|
+
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml
|
|
686
690
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml
|
|
687
691
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml
|
|
688
692
|
- spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml
|