bolognese 0.10.6 → 0.10.7

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 6cc9ef5cd1581bd63b5ae0a253fef1f7c70cc91e5c016513d03b569b8aa33098
-  data.tar.gz: 325310ff392d3a8e1ad8aa72f6e3a33ff7dccc32aa3dc74e78c82809a75e7bec
+  metadata.gz: 5398e40d11a911c0c3293208760a0a8ffe166bc07b53650f1c1e5e7f690d8080
+  data.tar.gz: adacb341706bc8896de717878e8925be25c4cd51b947852c01dde72d7063a9e9
 SHA512:
-  metadata.gz: efb6365cf04b4629c89ede9665e5bebdc4035c3287a11271d6dd9b27baea6aa1f8c725b8e2fb9b3af0ecaf6f38ea764bbabca4f756e49db32bc2b58a6ac06113
-  data.tar.gz: 41df0ef6c43539ed09cc19eb63fc5b18e090761f49e3302cb25d4a522d81c873a92a98c57c9fe262a44a1c48169ddbe6a7c212719c01a44497a2590300353aa6
+  metadata.gz: ace8d10e6469de1d9571f1e377305d41a498673ef9a5940bcc2695e0f596ede0ae385181fc43a7b2fbcdd88fc8f131fe2931f888e0a67e45d1b9c521573b1ed1
+  data.tar.gz: 3166e318b7482473f896c26f8b40c383ad6f8bdc879f5abaa8a0c1362c517b60e3e060725090715c925033b31e001570ef5e508ba8411c4df1216a2adbcc3f25

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    bolognese (0.10.6)
+    bolognese (0.10.7)
       activesupport (>= 4.2.5, < 6)
       benchmark_methods (~> 0.7)
       bibtex-ruby (~> 4.1)
@@ -48,7 +48,7 @@ GEM
       rdf (>= 2.2, < 4.0)
       sxp (~> 1.0)
     excon (0.62.0)
-    faraday (0.15.0)
+    faraday (0.15.1)
       multipart-post (>= 1.2, < 3)
     faraday-encoding (0.0.4)
       faraday

data/lib/bolognese/utils.rb

@@ -525,10 +525,12 @@ module Bolognese
     def github_from_url(url)
       return {} unless /\Ahttps:\/\/github\.com\/(.+)(?:\/)?(.+)?(?:\/tree\/)?(.*)\z/.match(url)
       words = URI.parse(url).path[1..-1].split('/')
+      path = words.length > 3 ? words[4...words.length].join("/") : nil
 
       { owner: words[0],
         repo: words[1],
-        release: words[3] }.compact
+        release: words[3],
+        path: path }.compact
     end
 
     def github_repo_from_url(url)
@@ -560,7 +562,12 @@ module Bolognese
 
     def github_as_codemeta_url(url)
       github_hash = github_from_url(url)
-      "https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/master/codemeta.json" if github_hash[:owner].present?
+
+      if github_hash[:path].to_s.end_with?("codemeta.json")
+        "https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/#{github_hash[:release]}/#{github_hash[:path]}"
+      elsif github_hash[:owner].present?
+        "https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/master/codemeta.json"
+      end
     end
 
     def get_date_parts(iso8601_time)

data/lib/bolognese/version.rb

@@ -1,3 +1,3 @@
 module Bolognese
-  VERSION = "0.10.6"
+  VERSION = "0.10.7"
 end

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml

@@ -0,0 +1,94 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://raw.githubusercontent.com/datacite/metadata-reports/master/software/codemeta.json
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Maremma 4.0.5 - https://github.com/datacite/maremma
+      Accept:
+      - application/json
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Content-Security-Policy:
+      - default-src 'none'; style-src 'unsafe-inline'; sandbox
+      Strict-Transport-Security:
+      - max-age=31536000
+      X-Content-Type-Options:
+      - nosniff
+      X-Frame-Options:
+      - deny
+      X-Xss-Protection:
+      - 1; mode=block
+      Etag:
+      - '"829d41492381ab4cff071648f8adc8785d1e74bf"'
+      Content-Type:
+      - text/plain; charset=utf-8
+      Cache-Control:
+      - max-age=300
+      X-Geo-Block-List:
+      - ''
+      X-Github-Request-Id:
+      - 184A:2E0C:29EE9F:2CDE1A:5AFD33B0
+      Content-Length:
+      - '1624'
+      Accept-Ranges:
+      - bytes
+      Date:
+      - Thu, 17 May 2018 07:48:03 GMT
+      Via:
+      - 1.1 varnish
+      Connection:
+      - keep-alive
+      X-Served-By:
+      - cache-fra19126-FRA
+      X-Cache:
+      - MISS
+      X-Cache-Hits:
+      - '0'
+      X-Timer:
+      - S1526543284.739021,VS0,VE117
+      Vary:
+      - Authorization,Accept-Encoding
+      Access-Control-Allow-Origin:
+      - "*"
+      X-Fastly-Request-Id:
+      - 83a604364010786c6336fe3d758f307d91584ff8
+      Expires:
+      - Thu, 17 May 2018 07:53:03 GMT
+      Source-Age:
+      - '0'
+    body:
+      encoding: ASCII-8BIT
+      string: "{\n\t\"@context\": \"https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld\",\n\t\"@type\":
+        \"SoftwareSourceCode\",\n\t\"@id\": \"https://doi.org/10.5438/wr0x-e194\",\n\t\"agents\":
+        [\n    {\n      \"@id\": \"https://orcid.org/0000-0003-0077-4738\",\n      \"@type\":
+        \"person\",\n      \"name\": \"Martin Fenner\",\n      \"mustBeCited\": true,\n
+        \     \"isMaintainer\": true,\n      \"isRightsHolder\": true\n    },\n    {\n
+        \     \"@id\": \"https://orcid.org/0000-0001-5934-7525\",\n      \"@type\":
+        \"person\",\n      \"name\": \"Daniel S. Katz\",\n      \"mustBeCited\": true,\n
+        \     \"isMaintainer\": true,\n      \"isRightsHolder\": true\n    },\n    {\n
+        \     \"@id\": \"https://orcid.org/0000-0002-3957-2474\",\n      \"@type\":
+        \"person\",\n      \"name\": \"Arfon Smith\",\n      \"mustBeCited\": true,\n
+        \     \"isMaintainer\": true,\n      \"isRightsHolder\": true\n    },\n    {\n
+        \     \"@id\": \"https://orcid.org/0000-0001-8135-3489\",\n      \"@type\":
+        \"person\",\n      \"name\": \"Lars Holm Nielsen\",\n      \"mustBeCited\":
+        true,\n      \"isMaintainer\": true,\n      \"isRightsHolder\": true\n    }\n
+        \ ],\n\t\"identifier\": \"https://doi.org/10.5438/wr0x-e194\",\n\t\"codeRepository\":
+        \"https://github.com/datacite/metadata-reports\",\n\t\"controlledTem\": \"software\",\n\t\"dateCreated\":
+        \"2018-03-09\",\n\t\"datePublished\": \"2018-05-17\",\n\t\"dateModified\":
+        \"2018-05-17\",\n\t\"description\": \"Analysis of DataCite DOIs registered
+        for software, broken down by repository and over time.\",\n\t\"isAutomatedBuild\":
+        true,\n\t\"licenseId\": \"MIT\",\n\t\"publisher\": \"DataCite\",\n\t\"tags\":
+        [\n\t\t\"doi\",\n\t\t\"software\",\n\t\t\"codemeta\"\n\t],\n\t\"title\": \"DOI
+        Registrations for Software\",\n\t\"programmingLanguage\": {\n\t\t\"name\":
+        \"R\",\n\t\t\"URL\": \"https://www.r-project.org/\"\n\t}\n}\n"
+    http_version: 
+  recorded_at: Thu, 17 May 2018 07:48:03 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_as_codemeta_url.yml

@@ -0,0 +1,37 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Maremma 4.0.5 - https://github.com/datacite/maremma
+      Accept:
+      - text/xml
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Server:
+      - Apache-Coyote/1.1
+      Crossref-Deployment-Name:
+      - qs3-1
+      Content-Type:
+      - text/xml;charset=UTF-8
+      Content-Language:
+      - en-US
+      Date:
+      - Thu, 17 May 2018 07:37:51 GMT
+      Connection:
+      - close
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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+    http_version: 
+  recorded_at: Thu, 17 May 2018 07:37:51 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_from_url.yml

@@ -0,0 +1,37 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Maremma 4.0.5 - https://github.com/datacite/maremma
+      Accept:
+      - text/xml
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Server:
+      - Apache-Coyote/1.1
+      Crossref-Deployment-Name:
+      - qs5-1
+      Content-Type:
+      - text/xml;charset=UTF-8
+      Content-Language:
+      - en-US
+      Date:
+      - Thu, 17 May 2018 07:26:19 GMT
+      Connection:
+      - close
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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+    http_version: 
+  recorded_at: Thu, 17 May 2018 07:26:20 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_from_url_file.yml

@@ -0,0 +1,37 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: http://www.crossref.org/openurl/?format=unixref&id=doi:10.1101/097196&noredirect=true&pid=tech@datacite.org
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Maremma 4.0.5 - https://github.com/datacite/maremma
+      Accept:
+      - text/xml
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Server:
+      - Apache-Coyote/1.1
+      Crossref-Deployment-Name:
+      - qs2-2
+      Content-Type:
+      - text/xml;charset=UTF-8
+      Content-Language:
+      - en-US
+      Date:
+      - Thu, 17 May 2018 07:28:11 GMT
+      Connection:
+      - close
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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+    http_version: 
+  recorded_at: Thu, 17 May 2018 07:28:12 GMT
+recorded_with: VCR 3.0.3

data/spec/readers/codemeta_reader_spec.rb

@@ -72,5 +72,23 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.date_modified).to eq("2017-02-24")
       expect(subject.publisher).to eq("DataCite")
     end
+
+    it "metadata_reports" do
+      input = "https://github.com/datacite/metadata-reports/blob/master/software/codemeta.json"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.identifier).to eq("https://doi.org/10.5438/wr0x-e194")
+      expect(subject.b_url).to eq("https://github.com/datacite/metadata-reports")
+      expect(subject.type).to eq("SoftwareSourceCode")
+      expect(subject.author.size).to eq(4)
+      expect(subject.author.last).to eq("type"=>"Person", "id"=>"https://orcid.org/0000-0001-8135-3489", "name"=>"Lars Holm Nielsen", "givenName"=>"Lars Holm", "familyName"=>"Nielsen")
+      expect(subject.title).to eq("DOI Registrations for Software")
+      expect(subject.description["text"]).to start_with("Analysis of DataCite DOIs registered for software")
+      expect(subject.keywords).to eq(["doi", "software", "codemeta"])
+      expect(subject.date_created).to eq("2018-03-09")
+      expect(subject.date_published).to eq("2018-05-17")
+      expect(subject.date_modified).to eq("2018-05-17")
+      expect(subject.publisher).to eq("DataCite")
+    end
   end
 end

data/spec/utils_spec.rb

@@ -286,4 +286,30 @@ describe Bolognese::Metadata, vcr: true do
       expect(response).to eq("2016")
     end
   end
+
+  context "github" do
+    it "github_from_url" do
+      url = "https://github.com/datacite/bolognese"
+      response = subject.github_from_url(url)
+      expect(response).to eq(:owner=>"datacite", :repo=>"bolognese")
+    end
+
+    it "github_from_url file" do
+      url = "https://github.com/datacite/metadata-reports/blob/master/software/codemeta.json"
+      response = subject.github_from_url(url)
+      expect(response).to eq(:owner=>"datacite", :repo=>"metadata-reports", :release=>"master", :path=>"software/codemeta.json")
+    end
+
+    it "github_as_codemeta_url" do
+      url = "https://github.com/datacite/bolognese"
+      response = subject.github_as_codemeta_url(url)
+      expect(response).to eq("https://raw.githubusercontent.com/datacite/bolognese/master/codemeta.json")
+    end
+
+    it "github_from_url file" do
+      url = "https://github.com/datacite/metadata-reports/blob/master/software/codemeta.json"
+      response = subject.github_as_codemeta_url(url)
+      expect(response).to eq("https://raw.githubusercontent.com/datacite/metadata-reports/master/software/codemeta.json")
+    end
+  end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bolognese
 version: !ruby/object:Gem::Version
-  version: 0.10.6
+  version: 0.10.7
 platform: ruby
 authors:
 - Martin Fenner
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-05-09 00:00:00.000000000 Z
+date: 2018-05-17 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: maremma
@@ -639,6 +639,7 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/no_codemeta_json.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/not_found_error.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml
@@ -701,6 +702,9 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/ornl_daac.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/pangaea.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/zenodo.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_as_codemeta_url.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_from_url.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/github/github_from_url_file.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/handle_input/unknown_DOI_prefix.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_alternate_identifiers/insert.yml