bix 0.0.5 → 0.0.6
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- data/lib/bix/gtf.rb +5 -1
- metadata +2 -2
data/lib/bix/gtf.rb
CHANGED
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@@ -5,7 +5,7 @@ module Bix
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5
5
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attr_accessor :chr, :prog, :feature, :start, :stop, :score, :strand, :frame, :props
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6
6
|
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7
7
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def from_line(line)
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8
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-
f = line.chomp.split("\t", -1)
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8
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+
f = line.chomp.rstrip.split("\t", -1)
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9
9
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@chr = f[0]
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10
10
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@prog = f[1]
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11
11
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@feature = f[2]
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@@ -34,6 +34,10 @@ module Bix
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34
34
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end
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35
35
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end
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36
36
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37
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+
def size
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38
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+
return @stop - @start + 1
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39
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+
end
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40
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+
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37
41
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# E.g. to get all exons
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38
42
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def self.get_all(io, feature_regex=//)
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39
43
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gtfs = []
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metadata
CHANGED
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@@ -2,7 +2,7 @@
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2
2
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name: bix
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3
3
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version: !ruby/object:Gem::Version
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4
4
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prerelease:
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5
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-
version: 0.0.
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5
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+
version: 0.0.6
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6
6
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platform: ruby
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7
7
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authors:
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8
8
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- Jesse Rodriguez
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@@ -10,7 +10,7 @@ autorequire:
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10
10
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bindir: bin
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11
11
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cert_chain: []
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12
12
|
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13
|
-
date: 2012-02
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|
13
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+
date: 2012-07-02 00:00:00 Z
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14
14
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dependencies:
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|
15
15
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- !ruby/object:Gem::Dependency
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|
16
16
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name: swak
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