bix 0.0.2 → 0.0.3
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- data/lib/bix/fastq.rb +17 -0
- metadata +2 -2
data/lib/bix/fastq.rb
CHANGED
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@@ -18,6 +18,15 @@ module Bix
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18
18
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return true
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19
19
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end
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20
20
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21
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+
def self.from_io(io)
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22
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+
fq = Fastq.new
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23
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+
if fq.from_io(io)
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24
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return fq
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25
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else
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26
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return nil
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27
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+
end
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28
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end
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29
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+
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21
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def qual_val(i)
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22
31
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return @qual[i].ord
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23
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end
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@@ -26,4 +35,12 @@ module Bix
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26
35
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return "#{@header}\n#{@seq}\n+\n#{@qual}"
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27
36
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end
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28
37
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end
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38
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+
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39
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+
def self.get_all_fastqs(io)
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40
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fqs = []
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41
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while(fq = Fastq.from_io(io))
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42
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fqs << fq
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43
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end
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44
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return fqs
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45
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end
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29
46
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end
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metadata
CHANGED
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@@ -2,7 +2,7 @@
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2
2
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name: bix
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3
3
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version: !ruby/object:Gem::Version
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4
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prerelease:
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5
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-
version: 0.0.
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5
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+
version: 0.0.3
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6
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platform: ruby
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7
7
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authors:
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8
8
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- Jesse Rodriguez
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@@ -10,7 +10,7 @@ autorequire:
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10
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bindir: bin
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11
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cert_chain: []
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12
12
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13
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-
date: 2011-09-
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13
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+
date: 2011-09-02 00:00:00 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: swak
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