bix 0.0.2 → 0.0.3

data/lib/bix/fastq.rb

@@ -18,6 +18,15 @@ module Bix
       return true
     end
 
+    def self.from_io(io)
+      fq = Fastq.new
+      if fq.from_io(io)
+        return fq
+      else
+        return nil
+      end
+    end
+
     def qual_val(i)
       return @qual[i].ord
     end
@@ -26,4 +35,12 @@ module Bix
       return "#{@header}\n#{@seq}\n+\n#{@qual}"
     end
   end
+
+  def self.get_all_fastqs(io)
+    fqs = []
+    while(fq = Fastq.from_io(io))
+      fqs << fq
+    end
+    return fqs
+  end
 end

metadata

@@ -2,7 +2,7 @@
 name: bix
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.0.2
+  version: 0.0.3
 platform: ruby
 authors: 
 - Jesse Rodriguez
@@ -10,7 +10,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-09-01 00:00:00 Z
+date: 2011-09-02 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: swak