biodiversity19 1.1.0 → 1.1.1

data/VERSION

@@ -1 +1 @@
-1.1.0
+1.1.1

data/lib/biodiversity/parser/scientific_name_clean.treetop

@@ -562,7 +562,7 @@ grammar ScientificNameClean
   end
 
   rule rank_uninomial
-    ("sect."/"sect "/"subsect."/"subsect "/"trib."/"trib "/"subtrib."/"subtrib "/"fam."/"fam "/"subfam."/"subfam "/"supertrib."/"supertrib ") {
+    ("sect."/"sect "/"subsect."/"subsect "/"trib."/"trib "/"subtrib."/"subtrib "/"ser."/"ser "/"subgen."/"subgen "/"fam."/"fam "/"subfam."/"subfam "/"supertrib."/"supertrib ") {
       def value
         text_value.strip
       end
@@ -646,7 +646,7 @@ grammar ScientificNameClean
   end
   
   rule genus
-    a:uninomial_string !(space_hard author_prefix_word space_hard author_word) {
+    a:(abbreviated_genus/uninomial_string) !(space_hard author_prefix_word space_hard author_word) {
       def value
         a.value
       end
@@ -664,6 +664,26 @@ grammar ScientificNameClean
       end
     }
   end
+
+  rule abbreviated_genus
+    [A-Z] [a-z]? [a-z]? [\\.] space {
+      def value
+        text_value.strip
+      end
+
+      def canonical
+        value
+      end
+
+      def pos
+        {interval.begin => ["abbreviated_genus", interval.end]}
+      end
+
+      def details
+        {:abbreviated_genus => {:string => value}}
+      end
+    } 
+  end
   
   rule uninomial_name
     a:uninomial_string space b:infragenus space c:simple_authorship {
@@ -995,10 +1015,10 @@ grammar ScientificNameClean
   end
   
   rule author_separator
-    ("&"/","/"and"/"et") {
+    ("&"/"&"/","/"and"/"et") {
       def apply(a,b)
         sep = text_value.strip
-        sep = " et" if ["&","and","et"].include? sep
+        sep = " et" if ["&", "&","and","et"].include? sep
         a.value + sep + " " + b.value
       end
       
@@ -1124,7 +1144,7 @@ grammar ScientificNameClean
   end
   
   rule author_prefix_word
-    space ("ab"/"bis"/"da"/"der"/"des"/"den"/"della"/"dela"/"de"/"di"/"du"/"la"/"ter"/"van"/"von") &space_hard {
+    space ("ab"/"af"/"bis"/"da"/"der"/"des"/"den"/"della"/"dela"/"de"/"di"/"du"/"la"/"ter"/"van"/"von") &space_hard {
       def value
         text_value
       end
@@ -1259,7 +1279,7 @@ grammar ScientificNameClean
   end
 
   rule annotation_identification
-    ("sp.aff."/"sp. aff."/"sp."/"sp "/"spp."/"spp "/"aff."/"aff "/"?") {
+    ("sp.nr."/"sp. nr."/"nr."/"nr "/"sp.aff."/"sp. aff."/"sp."/"sp "/"spp."/"spp "/"aff."/"aff "/"monst."/"?") {
 
       def value
         text_value.strip
@@ -1326,6 +1346,12 @@ grammar ScientificNameClean
       end
     }
     /
+    "o\'donelli" {
+      def value
+        "odonelli"
+      end
+    }
+    /
     a:valid_name_letter b:valid_name_letters {
       def value
         a.value + b.value

data/lib/biodiversity/parser/scientific_name_dirty.treetop

@@ -51,7 +51,7 @@ grammar ScientificNameDirty
     /
     super
   end
-  
+
   rule infraspecies
     a:infraspecies_string space b:year {
       def value
@@ -92,43 +92,6 @@ grammar ScientificNameDirty
     super
   end
   
-  # rule infraspecies_string
-  #   sel:rank space_hard a:species_word {
-  #     def value 
-  #       sel.apply(a)
-  #     end
-  #     def canonical
-  #       sel.canonical(a)
-  #     end
-  #     
-  #     def pos
-  #       sel.pos(a)
-  #     end
-  #   
-  #     def details
-  #       sel.details(a)
-  #     end
-  #   }
-  #   /
-  #   a:species_word ![\\.] {
-  #     def value
-  #       a.value
-  #     end
-  #     
-  #     def canonical
-  #       value
-  #     end
-  # 
-  #     def pos
-  #       {interval.begin => ['infraspecies', interval.end]}
-  #     end
-  # 
-  #     def details
-  #       {:infraspecies => {:string => value, :rank => 'n/a'}}
-  #     end
-  #   }
-  # end
-  
   rule species
     a:species_string space b:year {
        def value
@@ -293,9 +256,10 @@ grammar ScientificNameDirty
   rule string_authorship_inconsistencies
     ("corrig.")
   end
-  
+
+    
   rule garbage
-    space (["',.]) space [^щ]*
+    space (["',]) space [^щ]*
     /
     space_hard [^ш]+
   end

data/lib/biodiversity/parser.rb

@@ -12,7 +12,7 @@ module PreProcessor
   TAXON_CONCEPTS2 = /\s+(\(?s\.\s?s\.|\(?s\.\s?l\.|\(?s\.\s?str\.|\(?s\.\s?lat\.|sec\.|sec|near)\b.*$/
   TAXON_CONCEPTS3 = /(,\s*|\s+)(pro parte|p\.\s?p\.)\s*$/i  
   NOMEN_CONCEPTS  = /(,\s*|\s+)(\(?nomen|\(?nom\.|\(?comb\.).*$/i
-  LAST_WORD_JUNK  = /(,\s*|\s+)(spp\.|spp|var\.|var|von|van|sensu|new|non|nec|cf\.|cf|sp\.|sp|ssp\.|ssp|subsp|subgen|hybrid|hort\.|hort)\s*$/i
+  LAST_WORD_JUNK  = /(,\s*|\s+)(spp\.|spp|var\.|var|von|van|ined\.|ined|sensu|new|non|nec|cf\.|cf|sp\.|sp|ssp\.|ssp|subsp|subgen|hybrid|hort\.|hort)\??\s*$/i
   
   def self.clean(a_string)
     [NOTES, TAXON_CONCEPTS1, TAXON_CONCEPTS2, TAXON_CONCEPTS3, NOMEN_CONCEPTS, LAST_WORD_JUNK].each do |i|
@@ -75,8 +75,8 @@ class ScientificNameParser
   end
 
   def virus?(a_string)
-    !!(a_string.match(/\sICTV\s*$/) || a_string.match(/\b(virus|viruses|phage|phages|viroid|viroids|satellite|satellites|prion|prions)\b/i))
-  end 
+    !!(a_string.match(/\sICTV\s*$/) || a_string.match(/\b(virus|viruses|phage|phages|viroid|viroids|satellite|satellites|prion|prions)\b/i) || a_string.match(/[A-Z]?[a-z]+virus\b/))
+  end
 
   def unknown_placement?(a_string)
     !!(a_string.match(/incertae\s+sedis/i) || a_string.match(/inc\.\s*sed\./i))
@@ -99,8 +99,8 @@ class ScientificNameParser
         @parsed = @clean.parse(a_string) || @dirty.parse(a_string) 
         unless @parsed
           index = @dirty.index || @clean.index
-          salvage_match = a_string[0..index].match(/(.*[^,|\s]+)[,|\s]?\b.+$/)
-          salvage_string = salvage_match ? salvage_match[1] : a_string
+          salvage_match = a_string[0..index].split(/\s+/)[0..-2]
+          salvage_string = salvage_match ? salvage_match.join(' ') : a_string
           @parsed =  @dirty.parse(salvage_string) || @canonical.parse(a_string) || { :verbatim => a_string }
         end
       rescue

data/spec/parser/scientific_name_clean.spec.rb

@@ -68,6 +68,16 @@ describe ScientificNameClean do
     details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii"}}]
     pos(sn).should == {0=>["genus", 16], 21=>["species", 30]}
   end
+
+  it 'should parse abbreviated canonical' do
+    sn = 'P.    dendrobii'
+    parse(sn).should_not be_nil
+    value(sn).should == 'P. dendrobii'
+    sn = 'Ps.    dendrobii'
+    parse(sn).should_not be_nil
+    value(sn).should == 'Ps. dendrobii'
+    details(sn).should == [{:genus=>{:string=>"Ps."}, :species=>{:string=>"dendrobii"}}]
+  end
   
   
   it 'should parse species name with author and year' do
@@ -86,6 +96,19 @@ describe ScientificNameClean do
     parse("Platypus bicaudatulus Schedl 1935").should_not be_nil
   end
   
+  it 'should parse species name with abbreviated genus, author and year' do
+    sn = "P. bicaudatulus Schedl 1935"
+    parse(sn).should_not be_nil
+    value(sn).should == "P. bicaudatulus Schedl 1935"
+    sn = "Pl.  bicaudatulus Schedl, 1935h"
+    parse(sn).should_not be_nil
+    value(sn).should == "Pl. bicaudatulus Schedl 1935"
+    details(sn).should == [{:genus=>{:string=>"Pl."}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl, 1935h", :basionymAuthorTeam=>{:authorTeam=>"Schedl", :author=>["Schedl"], :year=>"1935"}}}]
+    sn = "Pla.  bicaudatulus Schedl, 1935h"
+    parse(sn).should_not be_nil
+    value(sn).should == "Pla. bicaudatulus Schedl 1935"
+  end
+
   it "should parse species name with author's postfix f., filius (son of)" do
     names = [ 
       [ "Platypus bicaudatulus Schedl f. 1935", [{:genus=>{:string=>"Platypus"}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl f. 1935", :basionymAuthorTeam=>{:authorTeam=>"Schedl f.", :author=>["Schedl f."], :year=>"1935"}}}], 'Platypus bicaudatulus Schedl f. 1935'],

data/spec/parser/scientific_name_dirty.spec.rb

@@ -74,8 +74,6 @@ describe ScientificNameDirty do
     sn = 'Zoropsis (TaKeoa) nishimurai Yaginuma, 1971' #skipping for now
     sn = 'Campylobacter pyloridis Marshall et al.1985.'
     details(sn).should == [{:genus=>{:string=>"Campylobacter"}, :species=>{:string=>"pyloridis", :authorship=>"Marshall et al.1985.", :basionymAuthorTeam=>{:authorTeam=>"Marshall et al.", :author=>["Marshall et al."], :year=>"1985"}}}]
-    sn = 'Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).'
-    details(sn).should == [{:genus=>{:string=>"Staphylococcus"}, :species=>{:string=>"hyicus"}, :infraspecies=>[{:string=>"chromogenes", :rank=>"n/a", :authorship=>"Devriese et al. 1978", :basionymAuthorTeam=>{:authorTeam=>"Devriese et al.", :author=>["Devriese et al."], :year=>"1978"}}]}]
     sn = 'Beijerinckia derxii venezuelae corrig. Thompson and Skerman, 1981'
     details(sn).should == [{:genus=>{:string=>"Beijerinckia"}, :species=>{:string=>"derxii"}, :infraspecies=>[{:string=>"venezuelae", :rank=>"n/a", :authorship=>"Thompson and Skerman, 1981", :basionymAuthorTeam=>{:authorTeam=>"Thompson and Skerman", :author=>["Thompson", "Skerman"], :year=>"1981"}}]}]
     details('Streptomyces parvisporogenes ignotus 1960').should == [{:genus=>{:string=>"Streptomyces"}, :species=>{:string=>"parvisporogenes"}, :infraspecies=>[{:string=>"ignotus", :rank=>"n/a", :year=>"1960"}]}]

data/spec/parser/test_data.txt

@@ -9,7 +9,7 @@ Pseudocercospora|{"scientificName":{"parsed":true, "parser_version":"test_versio
 
 #uninomial with author
 Pseudocercospora Speg.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg.","normalized":"Pseudocercospora Speg.","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg.","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."]}}}],"positions":{"0":["uninomial",16],"17":["author_word",22]}}}
-Döringina Ihering 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
+Döringina Ihering 1929 (synonym)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929 (synonym)", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
 
 #uninomial with author and year
 Pseudocercospora Speg. 1910|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg. 1910","normalized":"Pseudocercospora Speg. 1910","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg. 1910","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."],"year":"1910"}}}],"positions":{"0":["uninomial",16],"17":["author_word",22],"23":["year",27]}}}
@@ -45,6 +45,9 @@ Zygophyllaceae subfam. Tribuloideae D.M.Porter|{"scientificName":{"parsed":true,
 Cordia (Adans.) Kuntze sect. Salimori|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cordia (Adans.) Kuntze sect. Salimori", "normalized":"Cordia (Adans.) Kuntze sect. Salimori", "canonical":"Cordia", "hybrid":false, "details":[{"uninomial":{"string":"Cordia", "authorship":"(Adans.) Kuntze", "combinationAuthorTeam":{"authorTeam":"Kuntze", "author":["Kuntze"]}, "basionymAuthorTeam":{"authorTeam":"Adans.", "author":["Adans."]}}, "rank_uninomials":"sect.", "uninomial2":{"string":"Salimori"}}], "parser_run":1, "positions":{"0":["uninomial", 6], "8":["author_word", 14], "16":["author_word", 22], "23":["rank_uninomial", 28], "29":["uninomial", 37]}}}
 Poaceae supertrib. Arundinarodae L.Liu|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae supertrib. Arundinarodae L.Liu", "normalized":"Poaceae supertrib. Arundinarodae L.Liu", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"supertrib.", "uninomial2":{"string":"Arundinarodae", "authorship":"L.Liu", "basionymAuthorTeam":{"authorTeam":"L.Liu", "author":["L.Liu"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 18], "19":["uninomial", 38]}}}
 Alchemilla subsect. Sericeae A.Plocek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alchemilla subsect. Sericeae A.Plocek", "normalized":"Alchemilla subsect. Sericeae A.Plocek", "canonical":"Alchemilla", "hybrid":false, "details":[{"uninomial":{"string":"Alchemilla"}, "rank_uninomials":"subsect.", "uninomial2":{"string":"Sericeae", "authorship":"A.Plocek", "basionymAuthorTeam":{"authorTeam":"A.Plocek", "author":["A.Plocek"]}}}], "parser_run":1, "positions":{"0":["uninomial", 10], "11":["rank_uninomial", 19], "20":["uninomial", 37]}}}
+#NOTE incorrectly determined infragenus. Ambiguous placement which fits either author or infragenus.
+Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon", "normalized":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon et A.Tryon", "canonical":"Hymenophyllum", "hybrid":false, "details":[{"uninomial":{"string":"Hymenophyllum"}, "rank_uninomials":"subgen.", "uninomial2":{"string":"Hymenoglossum", "infragenus":{"string":"Presl"}, "authorship":"R.M.Tryon & A.Tryon", "basionymAuthorTeam":{"authorTeam":"R.M.Tryon & A.Tryon", "author":["R.M.Tryon", "A.Tryon"]}}}], "parser_run":1, "positions":{"0":["uninomial", 13], "14":["rank_uninomial", 21], "22":["uninomial", 63]}}}
+Aconitum ser. Tangutica W.T. Wang|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aconitum ser. Tangutica W.T. Wang", "normalized":"Aconitum ser. Tangutica W.T. Wang", "canonical":"Aconitum", "hybrid":false, "details":[{"uninomial":{"string":"Aconitum"}, "rank_uninomials":"ser.", "uninomial2":{"string":"Tangutica", "authorship":"W.T. Wang", "basionymAuthorTeam":{"authorTeam":"W.T. Wang", "author":["W.T. Wang"]}}}], "parser_run":1, "positions":{"0":["uninomial", 8], "9":["rank_uninomial", 13], "14":["uninomial", 33]}}}
 
 #canonical binomial
 Pseudocercospora     dendrobii|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora     dendrobii","normalized":"Pseudocercospora dendrobii","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii"}}],"positions":{"0":["genus",16],"21":["species",30]}}}
@@ -54,11 +57,20 @@ Cucurbita pepo|{"scientificName":{"parsed":true, "parser_version":"test_version"
 Platypus bicaudatulus Schedl 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl 1935","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl 1935","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"29":["year",33]}}}
 Platypus bicaudatulus Schedl, 1935h|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl, 1935h","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl, 1935h","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",35]}}}
 
+#binomial with abbreviated genus
+M. alpium|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"M. alpium", "normalized":"M. alpium", "canonical":"M. alpium", "hybrid":false, "details":[{"genus":{"string":"M."}, "species":{"string":"alpium"}}], "parser_run":1, "positions":{"0":["genus", 3], "3":["species", 9]}}}
+Mo. alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mo. alpium (Osbeck, 1778)", "normalized":"Mo. alpium (Osbeck 1778)", "canonical":"Mo. alpium", "hybrid":false, "details":[{"genus":{"string":"Mo."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
+Mom.alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mom.alpium (Osbeck, 1778)", "normalized":"Mom. alpium (Osbeck 1778)", "canonical":"Mom. alpium", "hybrid":false, "details":[{"genus":{"string":"Mom."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
+
+#binomial with apostrophe in species epithet
+Junellia o'donelli Moldenke, 1946|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Junellia o'donelli Moldenke, 1946", "normalized":"Junellia odonelli Moldenke 1946", "canonical":"Junellia odonelli", "hybrid":false, "details":[{"genus":{"string":"Junellia"}, "species":{"string":"odonelli", "authorship":"Moldenke, 1946", "basionymAuthorTeam":{"authorTeam":"Moldenke", "author":["Moldenke"], "year":"1946"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["author_word", 27], "29":["year", 33]}}}
+
 # whitespace names (rare, only ~50 cases)
 #TODO Donatia novae zelandiae Hook.f.
 #TODO Donatia novae-zelandiae Hook.f.
 
 #binomial with several authours
+Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "normalized":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "canonical":"Potamogeton iilinoensis ventanicola", "hybrid":false, "details":[{"genus":{"string":"Potamogeton"}, "species":{"string":"iilinoensis"}, "infraspecies":[{"string":"ventanicola", "rank":"var.", "authorship":"(Hicken) Horn af Rantzien", "combinationAuthorTeam":{"authorTeam":"Horn af Rantzien", "author":["Horn af Rantzien"]}, "basionymAuthorTeam":{"authorTeam":"Hicken", "author":["Hicken"]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 40], "42":["author_word", 48], "50":["author_word", 54], "55":["author_word", 57], "58":["author_word", 66]}}}
 Pseudocercospora dendrobii Goh & W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh & W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh & W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "33":["author_word", 37], "38":["author_word", 43], "44":["year", 48]}}}
 Pseudocercospora dendrobii Goh and W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh and W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh and W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh and W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "35":["author_word", 39], "40":["author_word", 45], "46":["year", 50]}}}
 Pseudocercospora dendrobii Goh et W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh et W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh et W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "34":["author_word", 38], "39":["author_word", 44], "45":["year", 49]}}}
@@ -70,6 +82,7 @@ Aëtosaurus ferratus|{"scientificName":{"parsed":true, "parser_version":"test_ve
 
 #binomial with several authors and a year
 Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
+Torymus bangalorensis (Mani & Kurian, 1953)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Torymus bangalorensis (Mani & Kurian, 1953)", "normalized":"Torymus bangalorensis (Mani et Kurian 1953)", "canonical":"Torymus bangalorensis", "hybrid":false, "details":[{"genus":{"string":"Torymus"}, "species":{"string":"bangalorensis", "authorship":"(Mani & Kurian, 1953)", "basionymAuthorTeam":{"authorTeam":"Mani & Kurian", "author":["Mani", "Kurian"], "year":"1953"}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 21], "23":["author_word", 27], "34":["author_word", 40], "42":["year", 46]}}}
 
 #iczn: species name with infragenus
 Hegeter (Hegeter) tenuipunctatus Brullé, 1838|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hegeter (Hegeter) tenuipunctatus Brullé, 1838", "normalized":"Hegeter (Hegeter) tenuipunctatus Brullé 1838", "canonical":"Hegeter tenuipunctatus", "hybrid":false, "details":[{"genus":{"string":"Hegeter"}, "infragenus":{"string":"Hegeter"}, "species":{"string":"tenuipunctatus", "authorship":"Brullé, 1838", "basionymAuthorTeam":{"authorTeam":"Brullé", "author":["Brullé"], "year":"1838"}}}], "parser_run":1, "positions":{"0":["genus", 7], "9":["infragenus", 16], "18":["species", 32], "33":["author_word", 39], "41":["year", 45]}}}
@@ -141,7 +154,7 @@ Polypodium pectinatum (L.) f. typica Rosenst.|{"scientificName":{"parsed":true,
 Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
 # TODO: the following phrasing can be ambiguous. Does f mean forma or filius? Currently capturing it as filius
 Polypodium pectinatum L.f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L.f. typica Rosenst.", "normalized":"Polypodium pectinatum L.f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.f.", "basionymAuthorTeam":{"authorTeam":"L.f.", "author":["L.f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 26], "27":["infraspecies", 33], "34":["author_word", 42]}}}
-Polypodium pectinatum L. f. thisisjunk Rosent.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. thisisjunk Rosent.", "normalized":"Polypodium pectinatum L. f. thisisjunk Rosent.", "canonical":"Polypodium pectinatum thisisjunk", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"thisisjunk", "rank":"f.", "authorship":"Rosent.", "basionymAuthorTeam":{"authorTeam":"Rosent.", "author":["Rosent."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 38], "39":["author_word", 46]}}}
+Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
 Polypodium lineare C.Chr. f. caudatoattenuatum Takeda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "normalized":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "canonical":"Polypodium lineare caudatoattenuatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"lineare", "authorship":"C.Chr.", "basionymAuthorTeam":{"authorTeam":"C.Chr.", "author":["C.Chr."]}}, "infraspecies":[{"string":"caudatoattenuatum", "rank":"f.", "authorship":"Takeda", "basionymAuthorTeam":{"authorTeam":"Takeda", "author":["Takeda"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["author_word", 25], "26":["infraspecific_type", 28], "29":["infraspecies", 46], "47":["author_word", 53]}}}
 Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "normalized":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "canonical":"Rhododendron weyrichii albiflorum", "hybrid":false, "details":[{"genus":{"string":"Rhododendron"}, "species":{"string":"weyrichii", "authorship":"Maxim.", "basionymAuthorTeam":{"authorTeam":"Maxim.", "author":["Maxim."]}}, "infraspecies":[{"string":"albiflorum", "rank":"f.", "authorship":"T.Yamaz.", "basionymAuthorTeam":{"authorTeam":"T.Yamaz.", "author":["T.Yamaz."]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 22], "23":["author_word", 29], "30":["infraspecific_type", 32], "33":["infraspecies", 43], "44":["author_word", 52]}}}
 Armeria maaritima (Mill.) Willd. fma. originaria Bern.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "normalized":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "canonical":"Armeria maaritima originaria", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"maaritima", "authorship":"(Mill.) Willd.", "combinationAuthorTeam":{"authorTeam":"Willd.", "author":["Willd."]}, "basionymAuthorTeam":{"authorTeam":"Mill.", "author":["Mill."]}}, "infraspecies":[{"string":"originaria", "rank":"fma.", "authorship":"Bern.", "basionymAuthorTeam":{"authorTeam":"Bern.", "author":["Bern."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 24], "26":["author_word", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 48], "49":["author_word", 54]}}}
@@ -174,6 +187,9 @@ Sphingomonas sp. 37|{"scientificName":{"parsed":true, "parser_version":"test_ver
 Thryothorus leucotis spp. bogotensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Thryothorus leucotis spp. bogotensis", "normalized":"Thryothorus leucotis", "canonical":"Thryothorus leucotis", "hybrid":false, "details":[{"genus":{"string":"Thryothorus"}, "species":{"string":"leucotis"}, "infraspecies":[{"annotation_identification":"spp.", "ignored":{"infraspecies":{"string":"bogotensis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["annotation_identification", 25]}}}
 Endoxyla sp. GM-, 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
 Liopropoma sp.2 Not applicable|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Liopropoma sp.2 Not applicable", "normalized":"Liopropoma", "canonical":"Liopropoma", "hybrid":false, "details":[{"genus":{"string":"Liopropoma"}, "annotation_identification":"sp.", "ignored":{"unparsed":"2 Not applicable"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["annotation_identification", 14]}}}
+Lacanobia nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 13]}}}
+Lacanobia sp. nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia sp. nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"sp. nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 17]}}}
+#TODO:Gemmula cf. cosmoi NP-2008 -- generates wrong authorship
 
 #unknown authorship
 Tragacantha leporina (?) Kuntze|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tragacantha leporina (?) Kuntze","normalized":"Tragacantha leporina (?) Kuntze","canonical":"Tragacantha leporina","hybrid":false,"details":[{"genus":{"string":"Tragacantha"},"species":{"string":"leporina","authorship":"(?) Kuntze","combinationAuthorTeam":{"authorTeam":"Kuntze","author":["Kuntze"]},"basionymAuthorTeam":{"authorTeam":"(?)","author":["?"]}}}],"positions":{"0":["genus",11],"12":["species",20],"22":["unknown_author",23],"25":["author_word",31]}}}
@@ -239,6 +255,7 @@ Salix ×capreola Andersson (1867)|{"scientificName":{"parsed":true, "parser_vers
 Salix x capreola Andersson|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salix x capreola Andersson","normalized":"Salix \u00d7 capreola Andersson","canonical":"Salix capreola","hybrid":true,"details":[{"genus":{"string":"Salix"},"species":{"string":"capreola","authorship":"Andersson","basionymAuthorTeam":{"authorTeam":"Andersson","author":["Andersson"]}}}],"positions":{"0":["genus",5],"8":["species",16],"17":["author_word",26]}}}
 
 #hybrid formula
+Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.", "normalized":"Stanhopea tigrina Bateman ex Lindl. × S. ecornuta Lem.", "canonical":"Stanhopea tigrina × S. ecornuta", "hybrid":true, "details":[{"genus":{"string":"Stanhopea"}, "species":{"string":"tigrina", "authorship":"Bateman ex Lindl.", "basionymAuthorTeam":{"authorTeam":"Bateman", "author":["Bateman"], "exAuthorTeam":{"authorTeam":"Lindl.", "author":["Lindl."]}}}}, {"genus":{"string":"S."}, "species":{"string":"ecornuta", "authorship":"Lem.", "basionymAuthorTeam":{"authorTeam":"Lem.", "author":["Lem."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["author_word", 25], "29":["author_word", 35], "38":["genus", 41], "41":["species", 49], "50":["author_word", 54]}}}
 Arthopyrenia hyalospora X Hydnellum scrobiculatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora X Hydnellum scrobiculatum","normalized":"Arthopyrenia hyalospora \u00d7 Hydnellum scrobiculatum","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"}}],"positions":{"0":["genus",12],"13":["species",23],"26":["genus",35],"36":["species",49]}}}
 Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz","normalized":"Arthopyrenia hyalospora (Banker) D. Hall \u00d7 Hydnellum scrobiculatum D.E. Stuntz","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora","authorship":"(Banker) D. Hall","combinationAuthorTeam":{"authorTeam":"D. Hall","author":["D. Hall"]},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum","authorship":"D.E. Stuntz","basionymAuthorTeam":{"authorTeam":"D.E. Stuntz","author":["D.E. Stuntz"]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",31],"33":["author_word",35],"36":["author_word",40],"43":["genus",52],"53":["species",66],"67":["author_word",71],"72":["author_word",78]}}}
 Arthopyrenia hyalospora x|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora x","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
@@ -329,6 +346,9 @@ Fakus prioni|{"scientificName":{"parsed":true, "verbatim":"Fakus prioni", "norma
 Phi h-like viruses|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Phi h-like viruses", "virus":true}}
 Viroids|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Viroids", "virus":true}}
 Fungal prions|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Fungal prions", "virus":true}}
+Human rhinovirus A11|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Human rhinovirus A11", "virus":true}}
+Kobuvirus korean black goat/South Korea/2010|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Kobuvirus korean black goat/South Korea/2010", "virus":true}}
+Australian bat lyssavirus human/AUS/1998|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Australian bat lyssavirus human/AUS/1998", "virus":true}}
 
 #double parenthesis
 Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Eichornia crassipes ( (Martius) ) Solms-Laub.","normalized":"Eichornia crassipes (Martius) Solms-Laub.","canonical":"Eichornia crassipes","hybrid":false,"details":[{"genus":{"string":"Eichornia"},"species":{"string":"crassipes","authorship":"( (Martius) ) Solms-Laub.","combinationAuthorTeam":{"authorTeam":"Solms-Laub.","author":["Solms-Laub."]},"basionymAuthorTeam":{"authorTeam":"Martius","author":["Martius"]}}}],"positions":{"0":["genus",9],"10":["species",19],"23":["author_word",30],"34":["author_word",45]}}}
@@ -381,3 +401,7 @@ Verpericola megasoma "Dall" Pils.|{"scientificName":{"parsed":true, "parser_vers
 Moraea spathulata ( (L. f. Klatt|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Moraea spathulata ( (L. f. Klatt","normalized":"Moraea spathulata","canonical":"Moraea spathulata","hybrid":false,"details":[{"genus":{"string":"Moraea"},"species":{"string":"spathulata"}}],"positions":{"0":["genus",6],"7":["species",17]}}}
 Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.", "normalized":"Stewartia micrantha (Chun) Sealy, Bot. Mag.", "canonical":"Stewartia micrantha", "hybrid":false, "details":[{"genus":{"string":"Stewartia"}, "species":{"string":"micrantha", "authorship":"(Chun) Sealy, Bot. Mag.", "combinationAuthorTeam":{"authorTeam":"Sealy, Bot. Mag.", "author":["Sealy", "Bot. Mag."]}, "basionymAuthorTeam":{"authorTeam":"Chun", "author":["Chun"]}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 19], "21":["author_word", 25], "27":["author_word", 32], "34":["author_word", 38], "39":["author_word", 43]}}}
 Pyrobaculum neutrophilum V24Sta|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pyrobaculum neutrophilum V24Sta", "normalized":"Pyrobaculum neutrophilum", "canonical":"Pyrobaculum neutrophilum", "hybrid":false, "details":[{"genus":{"string":"Pyrobaculum"}, "species":{"string":"neutrophilum"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 24]}}}
+Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004", "normalized":"Rana aurora Baird et Girard", "canonical":"Rana aurora", "hybrid":false, "details":[{"genus":{"string":"Rana"}, "species":{"string":"aurora", "authorship":"Baird and Girard", "basionymAuthorTeam":{"authorTeam":"Baird and Girard", "author":["Baird", "Girard"]}}}], "parser_run":2, "positions":{"0":["genus", 4], "5":["species", 11], "12":["author_word", 17], "22":["author_word", 28]}}}
+Agropyron pectiniforme var. karabaljikji ined.?|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Agropyron pectiniforme var. karabaljikji ined.?", "normalized":"Agropyron pectiniforme var. karabaljikji", "canonical":"Agropyron pectiniforme karabaljikji", "hybrid":false, "details":[{"genus":{"string":"Agropyron"}, "species":{"string":"pectiniforme"}, "infraspecies":[{"string":"karabaljikji", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 22], "23":["infraspecific_type", 27], "28":["infraspecies", 40]}}}
+Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).", "normalized":"Staphylococcus hyicus chromogenes Devriese et al. 1978", "canonical":"Staphylococcus hyicus chromogenes", "hybrid":false, "details":[{"genus":{"string":"Staphylococcus"}, "species":{"string":"hyicus"}, "infraspecies":[{"string":"chromogenes", "rank":"n/a", "authorship":"Devriese et al. 1978", "basionymAuthorTeam":{"authorTeam":"Devriese et al.", "author":["Devriese et al."], "year":"1978"}}]}], "parser_run":2, "positions":{"0":["genus", 14], "15":["species", 21], "22":["infraspecies", 33], "34":["author_word", 42], "43":["author_word", 49], "50":["year", 54]}}}
+Kerana var. cameroni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Kerana var. cameroni", "normalized":"Kerana", "canonical":"Kerana", "hybrid":false, "details":[{"uninomial":{"string":"Kerana"}}], "parser_run":2, "positions":{"0":["uninomial", 6]}}}

data/spec/parser/todo.txt

@@ -28,3 +28,28 @@ Rosa gallica × tomentosa var. eglandulosa R.Keller      Rosa gallica
 Rosa gallica × afzeliana subsp. vosagiaca forma subcomplicata R.Keller        Rosa gallica
 
 Salmonella sp. (ser.) brancaster Macdonald, Sivell, Emms and Taylor 1948
+
+Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.
+
+
+Junellia o'donelli Moldenke, 1946
+
+119052670 | Human rhinovirus A11 |
+
+Rubus idaeus monst. obtusifolius (Willd.) Focke | Rubus idaeus
+
+Kerana var. cameroni |Kerana var
+
+A. alba
+A.alba
+
+Bangalaia viridis sbsp. distinctemaculata Lepesme & Breuning, 1956
+
+Clostridium sp. enrichment culture clone M4C16
+
+
+000913765 Rubus x gracilidens Sudre
+          Rubus gracilidens | 1
+
+
+Salix myrtilloides x starkeana ssp. starkeana 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity19
 version: !ruby/object:Gem::Version
-  version: 1.1.0
+  version: 1.1.1
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-10-18 00:00:00.000000000 Z
+date: 2012-10-31 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: treetop
@@ -162,7 +162,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 1697761162885604721
+      hash: -4547569658768114623
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: