biodiversity19 1.0.4 → 1.0.5

data/VERSION

@@ -1 +1 @@
-1.0.4
+1.0.5

data/lib/biodiversity/parser.rb

@@ -47,7 +47,7 @@ class ScientificNameParser
   end
 
   def virus?(a_string)
-    !!(a_string.match(/\sICTV\s*$/) || a_string.match(/\s(virus|phage|viroid|satellite|prion)\b/i))
+    !!(a_string.match(/\sICTV\s*$/) || a_string.match(/\b(virus|viruses|phage|phages|viroid|viroids|satellite|satellites|prion|prions)\b/i))
   end 
 
   def unknown_placement?(a_string)

data/spec/parser/test_data.txt

@@ -265,6 +265,9 @@ Apple scar skin viroid|{"scientificName":{"parsed":false, "parser_version":"test
 Australian grapevine viroid [X17101] Australian grapevine viroid ICTV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Australian grapevine viroid [X17101] Australian grapevine viroid ICTV", "virus":true}}
 Agents of Spongiform Encephalopathies CWD prion Chronic wasting disease|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Agents of Spongiform Encephalopathies CWD prion Chronic wasting disease", "virus":true}}
 Fakus prioni|{"scientificName":{"parsed":true, "verbatim":"Fakus prioni", "normalized":"Fakus prioni", "canonical":"Fakus prioni", "hybrid":false, "details":[{"genus":{"string":"Fakus"}, "species":{"string":"prioni"}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 12]}}}
+Phi h-like viruses|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Phi h-like viruses", "virus":true}}
+Viroids|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Viroids", "virus":true}}
+Fungal prions|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Fungal prions", "virus":true}}
 
 #double parenthesis
 Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Eichornia crassipes ( (Martius) ) Solms-Laub.","normalized":"Eichornia crassipes (Martius) Solms-Laub.","canonical":"Eichornia crassipes","hybrid":false,"details":[{"genus":{"string":"Eichornia"},"species":{"string":"crassipes","authorship":"( (Martius) ) Solms-Laub.","combinationAuthorTeam":{"authorTeam":"Solms-Laub.","author":["Solms-Laub."]},"basionymAuthorTeam":{"authorTeam":"Martius","author":["Martius"]}}}],"positions":{"0":["genus",9],"10":["species",19],"23":["author_word",30],"34":["author_word",45]}}}

metadata

@@ -1,59 +1,48 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: biodiversity19
-version: !ruby/object:Gem::Version 
-  prerelease: false
-  segments: 
-  - 1
-  - 0
-  - 4
-  version: 1.0.4
+version: !ruby/object:Gem::Version
+  version: 1.0.5
+  prerelease: 
 platform: ruby
-authors: 
+authors:
 - Dmitry Mozzherin
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2011-08-03 00:00:00 -04:00
-default_executable: 
-dependencies: 
-- !ruby/object:Gem::Dependency 
+date: 2011-08-09 00:00:00.000000000Z
+dependencies:
+- !ruby/object:Gem::Dependency
   name: treetop
-  prerelease: false
-  requirement: &id001 !ruby/object:Gem::Requirement 
+  requirement: &70129715072740 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        segments: 
-        - 0
-        version: "0"
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
   type: :runtime
-  version_requirements: *id001
-- !ruby/object:Gem::Dependency 
-  name: rspec
   prerelease: false
-  requirement: &id002 !ruby/object:Gem::Requirement 
+  version_requirements: *70129715072740
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: &70129715071500 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        segments: 
-        - 0
-        version: "0"
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
   type: :development
-  version_requirements: *id002
+  prerelease: false
+  version_requirements: *70129715071500
 description: Tools for biodiversity informatics
 email: dmozzherin@gmail.com
-executables: 
+executables:
 - nnparse
 - parserver
 extensions: []
-
-extra_rdoc_files: 
+extra_rdoc_files:
 - LICENSE
 - README.rdoc
-files: 
+files:
 - .document
 - LICENSE
 - README.rdoc
@@ -80,37 +69,28 @@ files:
 - spec/parser/spec_helper.rb
 - spec/parser/test_data.txt
 - spec/spec_helper.rb
-has_rdoc: true
 homepage: http://github.com/GlobalNamesArchitecture/biodiversity
 licenses: []
-
 post_install_message: 
 rdoc_options: []
-
-require_paths: 
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
+required_ruby_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      segments: 
-      - 0
-      version: "0"
-required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      segments: 
-      - 0
-      version: "0"
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
 rubyforge_project: 
-rubygems_version: 1.3.7
+rubygems_version: 1.8.6
 signing_key: 
 specification_version: 3
 summary: Parser of scientific names
 test_files: []
-