biodiversity19 1.0.19 → 1.0.20

data/VERSION

@@ -1 +1 @@
-1.0.19
+1.0.20

data/lib/biodiversity/parser/scientific_name_clean.treetop

@@ -1183,6 +1183,7 @@ grammar ScientificNameClean
         res = text_value
         res = 'ae' if res == 'æ'
         res = 'oe' if res == 'œ'
+        res = 'e'  if res == 'ë' 
         res
       end
     }

data/spec/parser/test_data.txt

@@ -59,6 +59,7 @@ Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg|{"scientificNa
 Hirsutëlla mâle|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hirsutëlla mâle", "normalized":"Hirsutella male", "canonical":"Hirsutella male", "hybrid":false, "details":[{"genus":{"string":"Hirsutella"}, "species":{"string":"male"}}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 15]}}}
 Triticum repens vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens vulgäre", "normalized":"Triticum repens vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecies", 23]}}}
 Triticum repens var. vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens var. vulgäre", "normalized":"Triticum repens var. vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"var."}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecific_type", 20], "21":["infraspecies", 28]}}}
+Aëtosaurus ferratus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aëtosaurus ferratus", "normalized":"Aetosaurus ferratus", "canonical":"Aetosaurus ferratus", "hybrid":false, "details":[{"genus":{"string":"Aetosaurus"}, "species":{"string":"ferratus"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19]}}}
 
 #binomial with several authors and a year
 Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
@@ -163,7 +164,7 @@ Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"p
 Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom et Aptroot 2001","canonical":"Cladoniicola staurospora","hybrid":false,"details":[{"genus":{"string":"Cladoniicola"},"species":{"string":"staurospora","authorship":"Diederich, van den Boom & Aptroot 2001","basionymAuthorTeam":{"authorTeam":"Diederich, van den Boom & Aptroot","author":["Diederich","van den Boom","Aptroot"],"year":"2001"}}}],"positions":{"0":["genus",12],"13":["species",24],"25":["author_word",34],"36":["author_word",39],"40":["author_word",43],"44":["author_word",48],"51":["author_word",58],"59":["year",63]}}}
 Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman et E.A. Herrm.) Van der Walt et Arx 1981", "canonical":"Yarrowia lipolytica lipolytica", "hybrid":false, "details":[{"genus":{"string":"Yarrowia"}, "species":{"string":"lipolytica"}, "infraspecies":[{"string":"lipolytica", "rank":"var.", "authorship":"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "combinationAuthorTeam":{"authorTeam":"Van der Walt & Arx", "author":["Van der Walt", "Arx"], "year":"1981"}, "basionymAuthorTeam":{"authorTeam":"Wick., Kurtzman & E.A. Herrm.", "author":["Wick.", "Kurtzman", "E.A. Herrm."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19], "20":["infraspecific_type", 24], "25":["infraspecies", 35], "37":["author_word", 42], "44":["author_word", 52], "55":["author_word", 59], "60":["author_word", 66], "68":["author_word", 71], "72":["author_word", 75], "76":["author_word", 80], "83":["author_word", 86], "87":["year", 91]}}}
 Physalospora rubiginosa (Fr.) anon.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Physalospora rubiginosa (Fr.) anon.","normalized":"Physalospora rubiginosa (Fr.) anon.","canonical":"Physalospora rubiginosa","hybrid":false,"details":[{"genus":{"string":"Physalospora"},"species":{"string":"rubiginosa","authorship":"(Fr.) anon.","combinationAuthorTeam":{"authorTeam":"anon.","author":["unknown"]},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",28],"30":["unknown_author",35]}}}
-Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pleurotus \u00ebous (Berk.) Sacc. 1887","normalized":"Pleurotus \u00ebous (Berk.) Sacc. 1887","canonical":"Pleurotus \u00ebous","hybrid":false,"details":[{"genus":{"string":"Pleurotus"},"species":{"string":"\u00ebous","authorship":"(Berk.) Sacc. 1887","combinationAuthorTeam":{"authorTeam":"Sacc.","author":["Sacc."],"year":"1887"},"basionymAuthorTeam":{"authorTeam":"Berk.","author":["Berk."]}}}],"positions":{"0":["genus",9],"10":["species",14],"16":["author_word",21],"23":["author_word",28],"29":["year",33]}}}
+Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pleurotus ëous (Berk.) Sacc. 1887", "normalized":"Pleurotus eous (Berk.) Sacc. 1887", "canonical":"Pleurotus eous", "hybrid":false, "details":[{"genus":{"string":"Pleurotus"}, "species":{"string":"eous", "authorship":"(Berk.) Sacc. 1887", "combinationAuthorTeam":{"authorTeam":"Sacc.", "author":["Sacc."], "year":"1887"}, "basionymAuthorTeam":{"authorTeam":"Berk.", "author":["Berk."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14], "16":["author_word", 21], "23":["author_word", 28], "29":["year", 33]}}}
 Lecanora wetmorei Śliwa 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Lecanora wetmorei \u015aliwa 2004","normalized":"Lecanora wetmorei \u015aliwa 2004","canonical":"Lecanora wetmorei","hybrid":false,"details":[{"genus":{"string":"Lecanora"},"species":{"string":"wetmorei","authorship":"\u015aliwa 2004","basionymAuthorTeam":{"authorTeam":"\u015aliwa","author":["\u015aliwa"],"year":"2004"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"24":["year",28]}}}
 Calicium furfuraceum * furfuraceum (L.) Pers. 1797|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "normalized":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "canonical":"Calicium furfuraceum furfuraceum", "hybrid":false, "details":[{"genus":{"string":"Calicium"}, "species":{"string":"furfuraceum"}, "infraspecies":[{"string":"furfuraceum", "rank":"*", "authorship":"(L.) Pers. 1797", "combinationAuthorTeam":{"authorTeam":"Pers.", "author":["Pers."], "year":"1797"}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 20], "21":["infraspecific_type", 22], "23":["infraspecies", 34], "36":["author_word", 38], "40":["author_word", 45], "46":["year", 50]}}}
 Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "normalized":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "canonical":"Exobasidium vaccinii andromedae", "hybrid":false, "details":[{"genus":{"string":"Exobasidium"}, "species":{"string":"vaccinii"}, "infraspecies":[{"string":"andromedae", "rank":"**", "authorship":"(P. Karst.) P. Karst. 1882", "combinationAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."], "year":"1882"}, "basionymAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["infraspecific_type", 23], "24":["infraspecies", 34], "36":["author_word", 38], "39":["author_word", 45], "47":["author_word", 49], "50":["author_word", 56], "57":["year", 61]}}}

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity19
 version: !ruby/object:Gem::Version
-  version: 1.0.19
+  version: 1.0.20
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-08-27 00:00:00.000000000 Z
+date: 2012-08-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: treetop
@@ -162,7 +162,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -2276684114644108557
+      hash: -1298219178266283746
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: