biodiversity19 0.7.0 → 0.7.1

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data/VERSION CHANGED
@@ -1 +1 @@
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- 0.7.0
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+ 0.7.1
@@ -50,6 +50,10 @@ class ScientificNameParser
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  !!(a_string.match(/\sICTV\s*$/) || a_string.match(/\s(virus|phage|viroid|satellite|prion)\b/i))
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  end
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+ def unknown_placement?(a_string)
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+ !!(a_string.match(/incertae\s+sedis/i) || a_string.match(/inc\.\s*sed\./i))
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+ end
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+
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  def parsed
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  @parsed
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  end
@@ -60,6 +64,8 @@ class ScientificNameParser
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  if virus?(a_string)
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  @parsed = { :verbatim => a_string, :virus => true }
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+ elsif unknown_placement?(a_string)
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+ @parsed = { :verbatim => a_string }
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  else
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  @parsed = @clean.parse(a_string) || @dirty.parse(a_string) || @canonical.parse(a_string) || { :verbatim => a_string }
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  end
@@ -245,6 +245,15 @@ Achillea bonarota nom. in herb.|{"scientificName":{"parsed":true, "verbatim":"Ac
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  Aconitum napellus var. formosum (Rchb.) W. D. J. Koch (nom. ambig.)|{"scientificName":{"parsed":true, "verbatim":"Aconitum napellus var. formosum (Rchb.) W. D. J. Koch (nom. ambig.)", "normalized":"Aconitum napellus var. formosum (Rchb.) W. D. J. Koch", "canonical":"Aconitum napellus formosum", "hybrid":false, "details":[{"genus":{"string":"Aconitum"}, "species":{"string":"napellus"}, "infraspecies":[{"string":"formosum", "rank":"var.", "authorship":"(Rchb.) W. D. J. Koch", "combinationAuthorTeam":{"authorTeam":"W. D. J. Koch", "author":["W. D. J. Koch"]}, "basionymAuthorTeam":{"authorTeam":"Rchb.", "author":["Rchb."]}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 17], "23":["infraspecies", 31], "33":["author_word", 38], "40":["author_word", 42], "43":["author_word", 45], "46":["author_word", 48], "49":["author_word", 53]}}}
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  × Dialaeliopsis Hort.|{"scientificName":{"parsed":true, "verbatim":"× Dialaeliopsis Hort.", "normalized":"× Dialaeliopsis", "canonical":"Dialaeliopsis", "hybrid":true, "details":[{"uninomial":{"string":"Dialaeliopsis"}}], "parser_version":"test_version", "parser_run":1, "positions":{"2":["uninomial", 15]}}}
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+ #should not parse incertae sedis
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+
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+ Incertae sedis|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Incertae sedis"}}
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+ incertae sedis|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"incertae sedis"}}
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+ Inc. sed.|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Inc. sed."}}
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+ inc.sed.|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"inc.sed."}}
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+ inc. sed.|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"inc. sed."}}
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+
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+
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  #should not parse viruses
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  Abutilon mosaic virus [X15983] [X15984] Abutilon mosaic virus ICTV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Abutilon mosaic virus [X15983] [X15984] Abutilon mosaic virus ICTV", "virus":true}}
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  Acute bee paralysis virus [AF150629] Acute bee paralysis virus|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Acute bee paralysis virus [AF150629] Acute bee paralysis virus", "virus":true}}
metadata CHANGED
@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
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  segments:
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  - 0
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  - 7
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- - 0
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- version: 0.7.0
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+ - 1
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+ version: 0.7.1
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  platform: ruby
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  authors:
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  - Dmitry Mozzherin
@@ -14,7 +14,7 @@ autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2010-09-11 00:00:00 -04:00
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+ date: 2010-09-17 00:00:00 -04:00
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  default_executable:
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  dependencies:
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  - !ruby/object:Gem::Dependency