biodiversity 5.5.2 → 5.7.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  data.tar.gz: 807c8d7a3feca1c993fd9bd4e19f3740d85066e5dcc672366fd8f90db7bf1d7b
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+  data.tar.gz: e31042c099df51aa7d74d069e6030575f28382aa986618f90cabf3fb97ad696b966ff95683b46bf61acfc6a8ca62bdabcf148efe097d963f80a95a952c70adbd

data/.ruby-version

@@ -1 +1 @@
-3.0.2
+3.1.2

data/README.md

@@ -32,7 +32,7 @@ The gem should work on Linux, Mac and Windows (64bit) machines
 ## Benchmarks
 
 The fastest way to go through a massive amount of names is to use
-`Biodiversity::Parser.parse_ary([big array], simple = true)` function.
+`Biodiversity::Parser.parse_ary([big array], simple: true)` function.
 
 For example parsing a large file with one name per line:
 
@@ -75,10 +75,10 @@ Biodiversity.version
 # gnparser.
 
 # to parse a scientific name into a simple Ruby hash
-Biodiversity::Parser.parse("Plantago major", simple = true)
+Biodiversity::Parser.parse("Plantago major", simple: true)
 
 # to parse many scientific names using all computer CPUs
-Biodiversity::Parser.parse_ary(["Plantago major", ... ], simple = true)
+Biodiversity::Parser.parse_ary(["Plantago major", ... ], simple: true)
 
 # to parse a scientific name into a very detailed Ruby hash
 Biodiversity::Parser.parse("Plantago major")

data/biodiversity.gemspec

@@ -18,12 +18,12 @@ Gem::Specification.new do |gem|
   gem.files         = `git ls-files`.split("\n")
   gem.require_paths = ['lib']
 
-  gem.add_runtime_dependency 'ffi', '~> 1.14'
+  gem.add_runtime_dependency 'ffi', '~> 1.15'
 
-  gem.add_development_dependency 'bundler', '~> 2.2'
+  gem.add_development_dependency 'bundler', '~> 2.4'
   gem.add_development_dependency 'byebug', '~> 11.1'
   gem.add_development_dependency 'rake', '~> 13.0'
-  gem.add_development_dependency 'rspec', '~> 3.10'
-  gem.add_development_dependency 'rubocop', '~> 1.8'
-  gem.add_development_dependency 'solargraph', '~> 0.43'
+  gem.add_development_dependency 'rspec', '~> 3.12'
+  gem.add_development_dependency 'rubocop', '~> 1.50'
+  gem.add_development_dependency 'solargraph', '~> 0.49'
 end

data/clib/linux/libgnparser.h

@@ -5,7 +5,7 @@
 
 #line 1 "cgo-builtin-export-prolog"
 
-#include <stddef.h> /* for ptrdiff_t below */
+#include <stddef.h>
 
 #ifndef GO_CGO_EXPORT_PROLOGUE_H
 #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
 
 #line 5 "main.go"
 
-	#include "stdlib.h"
+  #include "stdlib.h"
 
 #line 1 "cgo-generated-wrapper"
 
@@ -45,11 +45,17 @@ typedef long long GoInt64;
 typedef unsigned long long GoUint64;
 typedef GoInt64 GoInt;
 typedef GoUint64 GoUint;
-typedef __SIZE_TYPE__ GoUintptr;
+typedef size_t GoUintptr;
 typedef float GoFloat32;
 typedef double GoFloat64;
+#ifdef _MSC_VER
+#include <complex.h>
+typedef _Fcomplex GoComplex64;
+typedef _Dcomplex GoComplex128;
+#else
 typedef float _Complex GoComplex64;
 typedef double _Complex GoComplex128;
+#endif
 
 /*
   static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
 // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
 // parsed details are ommited, if it is 1 -- they are included.
 // true.
-extern char* ParseToString(char* name, char* f, int details, int cultivars);
+extern char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
 
 // FreeMemory takes a string pointer and frees its memory.
 extern void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern void FreeMemory(char* p);
 // either CSV or JSON format.  Format argument can take values of 'csv',
 // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
 // true.
-extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
+extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
 
 #ifdef __cplusplus
 }

data/clib/mac/libgnparser.h

@@ -5,7 +5,7 @@
 
 #line 1 "cgo-builtin-export-prolog"
 
-#include <stddef.h> /* for ptrdiff_t below */
+#include <stddef.h>
 
 #ifndef GO_CGO_EXPORT_PROLOGUE_H
 #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
 
 #line 5 "main.go"
 
-	#include "stdlib.h"
+  #include "stdlib.h"
 
 #line 1 "cgo-generated-wrapper"
 
@@ -45,11 +45,17 @@ typedef long long GoInt64;
 typedef unsigned long long GoUint64;
 typedef GoInt64 GoInt;
 typedef GoUint64 GoUint;
-typedef __SIZE_TYPE__ GoUintptr;
+typedef size_t GoUintptr;
 typedef float GoFloat32;
 typedef double GoFloat64;
+#ifdef _MSC_VER
+#include <complex.h>
+typedef _Fcomplex GoComplex64;
+typedef _Dcomplex GoComplex128;
+#else
 typedef float _Complex GoComplex64;
 typedef double _Complex GoComplex128;
+#endif
 
 /*
   static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
 // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
 // parsed details are ommited, if it is 1 -- they are included.
 // true.
-extern char* ParseToString(char* name, char* f, int details, int cultivars);
+extern char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
 
 // FreeMemory takes a string pointer and frees its memory.
 extern void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern void FreeMemory(char* p);
 // either CSV or JSON format.  Format argument can take values of 'csv',
 // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
 // true.
-extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
+extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
 
 #ifdef __cplusplus
 }

data/clib/win/libgnparser.h

@@ -5,7 +5,7 @@
 
 #line 1 "cgo-builtin-export-prolog"
 
-#include <stddef.h> /* for ptrdiff_t below */
+#include <stddef.h>
 
 #ifndef GO_CGO_EXPORT_PROLOGUE_H
 #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
 
 #line 5 "main.go"
 
-	#include "stdlib.h"
+  #include "stdlib.h"
 
 #line 1 "cgo-generated-wrapper"
 
@@ -45,11 +45,17 @@ typedef long long GoInt64;
 typedef unsigned long long GoUint64;
 typedef GoInt64 GoInt;
 typedef GoUint64 GoUint;
-typedef __SIZE_TYPE__ GoUintptr;
+typedef size_t GoUintptr;
 typedef float GoFloat32;
 typedef double GoFloat64;
+#ifdef _MSC_VER
+#include <complex.h>
+typedef _Fcomplex GoComplex64;
+typedef _Dcomplex GoComplex128;
+#else
 typedef float _Complex GoComplex64;
 typedef double _Complex GoComplex128;
+#endif
 
 /*
   static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
 // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
 // parsed details are ommited, if it is 1 -- they are included.
 // true.
-extern __declspec(dllexport) char* ParseToString(char* name, char* f, int details, int cultivars);
+extern __declspec(dllexport) char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
 
 // FreeMemory takes a string pointer and frees its memory.
 extern __declspec(dllexport) void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern __declspec(dllexport) void FreeMemory(char* p);
 // either CSV or JSON format.  Format argument can take values of 'csv',
 // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
 // true.
-extern __declspec(dllexport) char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
+extern __declspec(dllexport) char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
 
 #ifdef __cplusplus
 }

data/lib/biodiversity/version.rb

@@ -2,8 +2,8 @@
 
 # Biodiversity module provides a namespace for scientific name parser.
 module Biodiversity
-  VERSION = '5.5.2'
-  GNPARSER_VERSION = 'GNparser 1.5.2'
+  VERSION = '5.7.2'
+  GNPARSER_VERSION = 'GNparser 1.7.2'
 
   def self.version
     VERSION

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity
 version: !ruby/object:Gem::Version
-  version: 5.5.2
+  version: 5.7.2
 platform: ruby
 authors:
 - Dmitry Mozzherin
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2021-11-10 00:00:00.000000000 Z
+date: 2023-04-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
@@ -16,28 +16,28 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.14'
+        version: '1.15'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.14'
+        version: '1.15'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '2.2'
+        version: '2.4'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '2.2'
+        version: '2.4'
 - !ruby/object:Gem::Dependency
   name: byebug
   requirement: !ruby/object:Gem::Requirement
@@ -72,42 +72,42 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '3.10'
+        version: '3.12'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '3.10'
+        version: '3.12'
 - !ruby/object:Gem::Dependency
   name: rubocop
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.8'
+        version: '1.50'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.8'
+        version: '1.50'
 - !ruby/object:Gem::Dependency
   name: solargraph
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.43'
+        version: '0.49'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.43'
+        version: '0.49'
 description: Parsing tool for biodiversity informatics
 email: dmozzherin@gmail.com
 executables: []
@@ -156,7 +156,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.2.22
+rubygems_version: 3.3.7
 signing_key:
 specification_version: 4
 summary: Parser of scientific names