biodiversity 5.5.2 → 5.7.2

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Files changed (12) hide show
  1. checksums.yaml +4 -4
  2. data/.ruby-version +1 -1
  3. data/README.md +3 -3
  4. data/biodiversity.gemspec +5 -5
  5. data/clib/linux/libgnparser.h +11 -5
  6. data/clib/linux/libgnparser.so +0 -0
  7. data/clib/mac/libgnparser.h +11 -5
  8. data/clib/mac/libgnparser.so +0 -0
  9. data/clib/win/libgnparser.h +11 -5
  10. data/clib/win/libgnparser.so +0 -0
  11. data/lib/biodiversity/version.rb +2 -2
  12. metadata +13 -13
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data/.ruby-version CHANGED
@@ -1 +1 @@
1
- 3.0.2
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+ 3.1.2
data/README.md CHANGED
@@ -32,7 +32,7 @@ The gem should work on Linux, Mac and Windows (64bit) machines
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  ## Benchmarks
33
33
 
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  The fastest way to go through a massive amount of names is to use
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- `Biodiversity::Parser.parse_ary([big array], simple = true)` function.
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+ `Biodiversity::Parser.parse_ary([big array], simple: true)` function.
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  For example parsing a large file with one name per line:
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@@ -75,10 +75,10 @@ Biodiversity.version
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  # gnparser.
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  # to parse a scientific name into a simple Ruby hash
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- Biodiversity::Parser.parse("Plantago major", simple = true)
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+ Biodiversity::Parser.parse("Plantago major", simple: true)
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  # to parse many scientific names using all computer CPUs
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- Biodiversity::Parser.parse_ary(["Plantago major", ... ], simple = true)
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+ Biodiversity::Parser.parse_ary(["Plantago major", ... ], simple: true)
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  # to parse a scientific name into a very detailed Ruby hash
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  Biodiversity::Parser.parse("Plantago major")
data/biodiversity.gemspec CHANGED
@@ -18,12 +18,12 @@ Gem::Specification.new do |gem|
18
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  gem.files = `git ls-files`.split("\n")
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  gem.require_paths = ['lib']
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- gem.add_runtime_dependency 'ffi', '~> 1.14'
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+ gem.add_runtime_dependency 'ffi', '~> 1.15'
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- gem.add_development_dependency 'bundler', '~> 2.2'
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+ gem.add_development_dependency 'bundler', '~> 2.4'
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  gem.add_development_dependency 'byebug', '~> 11.1'
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  gem.add_development_dependency 'rake', '~> 13.0'
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- gem.add_development_dependency 'rspec', '~> 3.10'
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- gem.add_development_dependency 'rubocop', '~> 1.8'
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- gem.add_development_dependency 'solargraph', '~> 0.43'
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+ gem.add_development_dependency 'rspec', '~> 3.12'
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+ gem.add_development_dependency 'rubocop', '~> 1.50'
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+ gem.add_development_dependency 'solargraph', '~> 0.49'
29
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  end
data/clib/linux/libgnparser.h CHANGED
@@ -5,7 +5,7 @@
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  #line 1 "cgo-builtin-export-prolog"
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- #include <stddef.h> /* for ptrdiff_t below */
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+ #include <stddef.h>
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10
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  #ifndef GO_CGO_EXPORT_PROLOGUE_H
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  #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
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  #line 5 "main.go"
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- #include "stdlib.h"
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+ #include "stdlib.h"
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  #line 1 "cgo-generated-wrapper"
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@@ -45,11 +45,17 @@ typedef long long GoInt64;
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  typedef unsigned long long GoUint64;
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  typedef GoInt64 GoInt;
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  typedef GoUint64 GoUint;
48
- typedef __SIZE_TYPE__ GoUintptr;
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+ typedef size_t GoUintptr;
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  typedef float GoFloat32;
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  typedef double GoFloat64;
51
+ #ifdef _MSC_VER
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+ #include <complex.h>
53
+ typedef _Fcomplex GoComplex64;
54
+ typedef _Dcomplex GoComplex128;
55
+ #else
51
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  typedef float _Complex GoComplex64;
52
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  typedef double _Complex GoComplex128;
58
+ #endif
53
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54
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  /*
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  static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
80
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  // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
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  // parsed details are ommited, if it is 1 -- they are included.
82
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  // true.
83
- extern char* ParseToString(char* name, char* f, int details, int cultivars);
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+ extern char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
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  // FreeMemory takes a string pointer and frees its memory.
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  extern void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern void FreeMemory(char* p);
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  // either CSV or JSON format. Format argument can take values of 'csv',
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  // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
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  // true.
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- extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
99
+ extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
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95
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  #ifdef __cplusplus
96
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  }
data/clib/linux/libgnparser.so CHANGED
Binary file
data/clib/mac/libgnparser.h CHANGED
@@ -5,7 +5,7 @@
5
5
 
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  #line 1 "cgo-builtin-export-prolog"
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- #include <stddef.h> /* for ptrdiff_t below */
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+ #include <stddef.h>
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9
 
10
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  #ifndef GO_CGO_EXPORT_PROLOGUE_H
11
11
  #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
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  #line 5 "main.go"
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- #include "stdlib.h"
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+ #include "stdlib.h"
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  #line 1 "cgo-generated-wrapper"
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@@ -45,11 +45,17 @@ typedef long long GoInt64;
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  typedef unsigned long long GoUint64;
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  typedef GoInt64 GoInt;
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  typedef GoUint64 GoUint;
48
- typedef __SIZE_TYPE__ GoUintptr;
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+ typedef size_t GoUintptr;
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  typedef float GoFloat32;
50
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  typedef double GoFloat64;
51
+ #ifdef _MSC_VER
52
+ #include <complex.h>
53
+ typedef _Fcomplex GoComplex64;
54
+ typedef _Dcomplex GoComplex128;
55
+ #else
51
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  typedef float _Complex GoComplex64;
52
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  typedef double _Complex GoComplex128;
58
+ #endif
53
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54
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  /*
55
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  static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
80
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  // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
81
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  // parsed details are ommited, if it is 1 -- they are included.
82
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  // true.
83
- extern char* ParseToString(char* name, char* f, int details, int cultivars);
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+ extern char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
84
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  // FreeMemory takes a string pointer and frees its memory.
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  extern void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern void FreeMemory(char* p);
90
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  // either CSV or JSON format. Format argument can take values of 'csv',
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  // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
92
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  // true.
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- extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
99
+ extern char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
94
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95
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  #ifdef __cplusplus
96
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  }
data/clib/mac/libgnparser.so CHANGED
Binary file
data/clib/win/libgnparser.h CHANGED
@@ -5,7 +5,7 @@
5
5
 
6
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  #line 1 "cgo-builtin-export-prolog"
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8
- #include <stddef.h> /* for ptrdiff_t below */
8
+ #include <stddef.h>
9
9
 
10
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  #ifndef GO_CGO_EXPORT_PROLOGUE_H
11
11
  #define GO_CGO_EXPORT_PROLOGUE_H
@@ -21,7 +21,7 @@ typedef struct { const char *p; ptrdiff_t n; } _GoString_;
21
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22
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  #line 5 "main.go"
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- #include "stdlib.h"
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+ #include "stdlib.h"
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  #line 1 "cgo-generated-wrapper"
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@@ -45,11 +45,17 @@ typedef long long GoInt64;
45
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  typedef unsigned long long GoUint64;
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  typedef GoInt64 GoInt;
47
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  typedef GoUint64 GoUint;
48
- typedef __SIZE_TYPE__ GoUintptr;
48
+ typedef size_t GoUintptr;
49
49
  typedef float GoFloat32;
50
50
  typedef double GoFloat64;
51
+ #ifdef _MSC_VER
52
+ #include <complex.h>
53
+ typedef _Fcomplex GoComplex64;
54
+ typedef _Dcomplex GoComplex128;
55
+ #else
51
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  typedef float _Complex GoComplex64;
52
57
  typedef double _Complex GoComplex128;
58
+ #endif
53
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54
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  /*
55
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  static assertion to make sure the file is being used on architecture
@@ -80,7 +86,7 @@ extern "C" {
80
86
  // 'csv', 'compact', 'pretty'. If withDetails argument is 0, additional
81
87
  // parsed details are ommited, if it is 1 -- they are included.
82
88
  // true.
83
- extern __declspec(dllexport) char* ParseToString(char* name, char* f, int details, int cultivars);
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+ extern __declspec(dllexport) char* ParseToString(char* name, char* f, int details, int cultivars, int diaereses);
84
90
 
85
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  // FreeMemory takes a string pointer and frees its memory.
86
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  extern __declspec(dllexport) void FreeMemory(char* p);
@@ -90,7 +96,7 @@ extern __declspec(dllexport) void FreeMemory(char* p);
90
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  // either CSV or JSON format. Format argument can take values of 'csv',
91
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  // 'compact', or 'pretty'. For withDetails argument 0 means false, 1 means
92
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  // true.
93
- extern __declspec(dllexport) char* ParseAryToString(char** in, int length, char* f, int details, int cultivars);
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+ extern __declspec(dllexport) char* ParseAryToString(char** in, int length, char* f, int details, int cultivars, int diaereses);
94
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95
101
  #ifdef __cplusplus
96
102
  }
data/clib/win/libgnparser.so CHANGED
Binary file
data/lib/biodiversity/version.rb CHANGED
@@ -2,8 +2,8 @@
2
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  # Biodiversity module provides a namespace for scientific name parser.
4
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  module Biodiversity
5
- VERSION = '5.5.2'
6
- GNPARSER_VERSION = 'GNparser 1.5.2'
5
+ VERSION = '5.7.2'
6
+ GNPARSER_VERSION = 'GNparser 1.7.2'
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8
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  def self.version
9
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  VERSION
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
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  name: biodiversity
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  version: !ruby/object:Gem::Version
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- version: 5.5.2
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+ version: 5.7.2
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  platform: ruby
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  authors:
7
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  - Dmitry Mozzherin
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  autorequire:
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  bindir: bin
10
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  cert_chain: []
11
- date: 2021-11-10 00:00:00.000000000 Z
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+ date: 2023-04-19 00:00:00.000000000 Z
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12
  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ffi
@@ -16,28 +16,28 @@ dependencies:
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
19
- version: '1.14'
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+ version: '1.15'
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  type: :runtime
21
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
23
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  requirements:
24
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: '1.14'
26
+ version: '1.15'
27
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  - !ruby/object:Gem::Dependency
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28
  name: bundler
29
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  requirement: !ruby/object:Gem::Requirement
30
30
  requirements:
31
31
  - - "~>"
32
32
  - !ruby/object:Gem::Version
33
- version: '2.2'
33
+ version: '2.4'
34
34
  type: :development
35
35
  prerelease: false
36
36
  version_requirements: !ruby/object:Gem::Requirement
37
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  requirements:
38
38
  - - "~>"
39
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  - !ruby/object:Gem::Version
40
- version: '2.2'
40
+ version: '2.4'
41
41
  - !ruby/object:Gem::Dependency
42
42
  name: byebug
43
43
  requirement: !ruby/object:Gem::Requirement
@@ -72,42 +72,42 @@ dependencies:
72
72
  requirements:
73
73
  - - "~>"
74
74
  - !ruby/object:Gem::Version
75
- version: '3.10'
75
+ version: '3.12'
76
76
  type: :development
77
77
  prerelease: false
78
78
  version_requirements: !ruby/object:Gem::Requirement
79
79
  requirements:
80
80
  - - "~>"
81
81
  - !ruby/object:Gem::Version
82
- version: '3.10'
82
+ version: '3.12'
83
83
  - !ruby/object:Gem::Dependency
84
84
  name: rubocop
85
85
  requirement: !ruby/object:Gem::Requirement
86
86
  requirements:
87
87
  - - "~>"
88
88
  - !ruby/object:Gem::Version
89
- version: '1.8'
89
+ version: '1.50'
90
90
  type: :development
91
91
  prerelease: false
92
92
  version_requirements: !ruby/object:Gem::Requirement
93
93
  requirements:
94
94
  - - "~>"
95
95
  - !ruby/object:Gem::Version
96
- version: '1.8'
96
+ version: '1.50'
97
97
  - !ruby/object:Gem::Dependency
98
98
  name: solargraph
99
99
  requirement: !ruby/object:Gem::Requirement
100
100
  requirements:
101
101
  - - "~>"
102
102
  - !ruby/object:Gem::Version
103
- version: '0.43'
103
+ version: '0.49'
104
104
  type: :development
105
105
  prerelease: false
106
106
  version_requirements: !ruby/object:Gem::Requirement
107
107
  requirements:
108
108
  - - "~>"
109
109
  - !ruby/object:Gem::Version
110
- version: '0.43'
110
+ version: '0.49'
111
111
  description: Parsing tool for biodiversity informatics
112
112
  email: dmozzherin@gmail.com
113
113
  executables: []
@@ -156,7 +156,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
156
156
  - !ruby/object:Gem::Version
157
157
  version: '0'
158
158
  requirements: []
159
- rubygems_version: 3.2.22
159
+ rubygems_version: 3.3.7
160
160
  signing_key:
161
161
  specification_version: 4
162
162
  summary: Parser of scientific names