biodiversity 3.1.9 → 3.1.10

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 318aec7ddf0deaf30d9b849f06b499a22f148100
+  metadata.gz: d4a11c6b12ca173da86c7baa1242b9639e54d93c
+  data.tar.gz: 8c47f66efd6f8ee2b3e3dce894927a4cc73237a1
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+  data.tar.gz: 36f21aed88acc4405c147b908de36d6109010935fec99108c90ca73d6dabd2b942a08a1eca04fd28a644bbec51a12b5836272ef2280160b4321f2f434760f665

data/CHANGELOG

@@ -1,4 +1,6 @@
-3.1.8 -- more virus keywords, better handling of apostrophes in
+3.1.10 -- NPV viruses added
+
+3.1.9 -- more virus keywords, better handling of apostrophes in
 species epithets
 
 3.1.8 -- downgrading dependency on treetop to 1.4.1

data/lib/biodiversity/parser.rb

@@ -165,7 +165,7 @@ class ScientificNameParser
                           phage|phages|viroid|viroids|virophage|
                           prion|prions|NPV)\b/ix) ||
        a_string.match(/[A-Z]?[a-z]+virus\b/) ||
-       a_string.match(/\b[A-Za-z]*satellite[s]?\b/))
+       a_string.match(/\b[A-Za-z]*(satellite[s]?|NPV)\b/))
   end
 
   def noparse?(a_string)

data/lib/biodiversity/version.rb

@@ -1,3 +1,3 @@
 module Biodiversity
-  VERSION = "3.1.9"
+  VERSION = "3.1.10"
 end

data/spec/files/test_data.txt

@@ -366,6 +366,13 @@ Bemisia betasatellite LW-2014|{"scientificName":{"parsed":false, "parser_version
 Tomato leaf curl Bangladesh betasatellites [India/Patna/Chilli/2008]|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Tomato leaf curl Bangladesh betasatellites [India/Patna/Chilli/2008]", "virus":true}}
 Intracisternal A-particles|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Intracisternal A-particles", "virus":true}}
 Saccharomyces cerevisiae killer particle M1|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Saccharomyces cerevisiae killer particle M1", "virus":true}}
+Uranotaenia sapphirina NPV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Uranotaenia sapphirina NPV", "virus":true}}
+Spodoptera exigua nuclear polyhedrosis virus SeMNPV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Spodoptera exigua nuclear polyhedrosis virus SeMNPV", "virus":true}}
+Spodoptera frugiperda MNPV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Spodoptera frugiperda MNPV", "virus":true}}
+Rachiplusia ou MNPV (strain R1)|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Rachiplusia ou MNPV (strain R1)", "virus":true}}
+Orgyia pseudotsugata nuclear polyhedrosis virus OpMNPV|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Orgyia pseudotsugata nuclear polyhedrosis virus OpMNPV", "virus":true}}
+Mamestra configurata NPV-A|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Mamestra configurata NPV-A", "virus":true}}
+Helicoverpa armigera SNPV NNg1|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Helicoverpa armigera SNPV NNg1", "virus":true}}
 
 #should not parse non-virus names containing RNA
 ssRNA|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"ssRNA"}}

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity
 version: !ruby/object:Gem::Version
-  version: 3.1.9
+  version: 3.1.10
 platform: ruby
 authors:
 - Dmitry Mozzherin