bio-wolf_psort_wrapper 0.0.1 → 0.0.3

data/VERSION

@@ -1 +1 @@
-0.0.1
+0.0.3

data/bio-wolf_psort_wrapper.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-wolf_psort_wrapper"
-  s.version = "0.0.1"
+  s.version = "0.0.3"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Ben J Woodcroft"]

data/lib/bio/appl/psort/wolf_psort_wrapper.rb

@@ -45,6 +45,13 @@ module Bio
         'plant',
         'fungi'
       ]
+      # Locations for each lineage were taken from Table 1 of:
+      # Paul Horton, Keun-Joon Park, Takeshi Obayashi & Kenta Nakai,
+      # "Protein Subcellular Localization Prediction with WoLF PSORT",
+      # Proceedings of the 4th Annual Asia Pacific Bioinformatics Conference APBC06, Taipei, Taiwan. pp. 39-48, 2006.)
+      ANIMAL_LOCATIONS = LOCATIONS.reject{|l| l=='chlo'}
+      FUNGI_LOCATIONS = LOCATIONS.reject{|l| l=='chlo' or l=='lyso'}
+      PLANT_LOCATIONS = LOCATIONS.reject{|l| l=='lyso'}
       
       class Report
         # Name of the sequence that has been analyzed, according

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: bio-wolf_psort_wrapper
 version: !ruby/object:Gem::Version 
-  hash: 29
+  hash: 25
   prerelease: 
   segments: 
   - 0
   - 0
-  - 1
-  version: 0.0.1
+  - 3
+  version: 0.0.3
 platform: ruby
 authors: 
 - Ben J Woodcroft