bio-twobit 0.2.0 → 0.2.2

data/lib/bio/twobit/references/crigrichov2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class CriGriChoV2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "criGriChoV2"
+        @metadata.name = "criGriChoV2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/bigZips/criGriChoV2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/dasnov3.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DasNov3 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "dasNov3"
+        @metadata.name = "dasNov3"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/dasNov3/bigZips/dasNov3.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/dipord1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DipOrd1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "dipOrd1"
+        @metadata.name = "dipOrd1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/dipOrd1/bigZips/dipOrd1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/dp3.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class Dp3 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "dp3"
+        @metadata.name = "dp3"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/dp3/bigZips/dp3.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/droana2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroAna2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droAna2"
+        @metadata.name = "droAna2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droAna2/bigZips/droAna2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/droere1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroEre1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droEre1"
+        @metadata.name = "droEre1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droEre1/bigZips/droEre1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/drogri1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroGri1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droGri1"
+        @metadata.name = "droGri1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droGri1/bigZips/droGri1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/dromoj2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroMoj2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droMoj2"
+        @metadata.name = "droMoj2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droMoj2/bigZips/droMoj2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/droper1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroPer1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droPer1"
+        @metadata.name = "droPer1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droPer1/bigZips/droPer1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/drosec1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroSec1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droSec1"
+        @metadata.name = "droSec1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droSec1/bigZips/droSec1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/drosim1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroSim1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droSim1"
+        @metadata.name = "droSim1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droSim1/bigZips/droSim1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/drovir2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroVir2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droVir2"
+        @metadata.name = "droVir2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droVir2/bigZips/droVir2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/droyak2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class DroYak2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "droYak2"
+        @metadata.name = "droYak2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/droYak2/bigZips/droYak2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/ebovir3.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class EboVir3 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "eboVir3"
+        @metadata.name = "eboVir3"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/eboVir3/bigZips/eboVir3.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/echtel2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class EchTel2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "echTel2"
+        @metadata.name = "echTel2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/echTel2/bigZips/echTel2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/equcab3.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class EquCab3 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "equCab3"
+        @metadata.name = "equCab3"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/equCab3/bigZips/equCab3.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/erieur2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class EriEur2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "eriEur2"
+        @metadata.name = "eriEur2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/eriEur2/bigZips/eriEur2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/felcat9.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class FelCat9 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "felCat9"
+        @metadata.name = "felCat9"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/felCat9/bigZips/felCat9.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/fr2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class Fr2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "fr2"
+        @metadata.name = "fr2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/fr2/bigZips/fr2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/gadmor1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class GadMor1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "gadMor1"
+        @metadata.name = "gadMor1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/gadMor1/bigZips/gadMor1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/galgal6.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class GalGal6 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "galGal6"
+        @metadata.name = "galGal6"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/galGal6/bigZips/galGal6.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/geofor1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class GeoFor1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "geoFor1"
+        @metadata.name = "geoFor1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/geoFor1/bigZips/geoFor1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/gorgor6.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class GorGor6 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "gorGor6"
+        @metadata.name = "gorGor6"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/bigZips/gorGor6.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/hetgla2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class HetGla2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "hetGla2"
+        @metadata.name = "hetGla2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/hetGla2/bigZips/hetGla2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/latcha1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class LatCha1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "latCha1"
+        @metadata.name = "latCha1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/latCha1/bigZips/latCha1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/loxafr3.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class LoxAfr3 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "loxAfr3"
+        @metadata.name = "loxAfr3"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/loxAfr3/bigZips/loxAfr3.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/maceug2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MacEug2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "macEug2"
+        @metadata.name = "macEug2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/macEug2/bigZips/macEug2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/macfas5.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MacFas5 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "macFas5"
+        @metadata.name = "macFas5"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/macFas5/bigZips/macFas5.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/manpen1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class ManPen1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "manPen1"
+        @metadata.name = "manPen1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/manPen1/bigZips/manPen1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/melgal1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MelGal1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "melGal1"
+        @metadata.name = "melGal1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/melGal1/bigZips/melGal1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/melund1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MelUnd1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "melUnd1"
+        @metadata.name = "melUnd1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/melUnd1/bigZips/melUnd1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/micmur2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MicMur2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "micMur2"
+        @metadata.name = "micMur2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/micMur2/bigZips/micMur2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/mondom5.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MonDom5 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "monDom5"
+        @metadata.name = "monDom5"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/monDom5/bigZips/monDom5.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/myoluc2.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class MyoLuc2 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "myoLuc2"
+        @metadata.name = "myoLuc2"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/myoLuc2/bigZips/myoLuc2.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/nanpar1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class NanPar1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "nanPar1"
+        @metadata.name = "nanPar1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/nanPar1/bigZips/nanPar1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/naslar1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class NasLar1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "nasLar1"
+        @metadata.name = "nasLar1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/nasLar1/bigZips/nasLar1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end

data/lib/bio/twobit/references/neosch1.rb

@@ -0,0 +1,16 @@
+require_relative "../reference_genome"
+
+module Bio
+  class TwoBit
+    class NeoSch1 < ReferenceGenome
+      def initialize(**kwargs)
+        @metadata      = Metadata.new
+        @metadata.id   = "neoSch1"
+        @metadata.name = "neoSch1"
+        @metadata.url  = "https://hgdownload.soe.ucsc.edu/downloads.html"
+        @data_url      = "https://hgdownload.soe.ucsc.edu/goldenPath/neoSch1/bigZips/neoSch1.2bit"
+        super(**kwargs)
+      end
+    end
+  end
+end