bio-tm_hmm 0.2.2 → 0.2.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/Gemfile +3 -2
- data/VERSION +1 -1
- data/bin/bio-tm_hmm +0 -1
- data/bio-tm_hmm.gemspec +33 -29
- metadata +47 -48
checksums.yaml
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@@ -0,0 +1,7 @@
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---
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SHA1:
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metadata.gz: a63ec466bfd78426f0c588a4fa930cc83ef1b017
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data.tar.gz: 016f3310e83507e7a8c43d5f4980495990299ee9
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SHA512:
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metadata.gz: cab26f0526b1d1858251b9c7db940b0b79aa8d9f2e1a051060d24463337d63124ccdcaddbbcf550f01fc041afa160f3df19eba5449b424decdd4397a5c2d5d16
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data.tar.gz: 68a9f82aaafb5723ee217405872bababd8c458a7ecb77e09c704f4a5303ba3033be3d1127deb3ff66642d4e5f7259fe201f0bbfd01ad94841b3e963776af45e2
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data/Gemfile
CHANGED
@@ -2,13 +2,14 @@ source "http://rubygems.org"
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# Add dependencies required to use your gem here.
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# Example:
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# gem "activesupport", ">= 2.3.5"
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gem "bio", ">= 1.4.2"
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gem "test-unit", "~>3.2"
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# Add dependencies to develop your gem here.
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# Include everything needed to run rake, tests, features, etc.
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group :development do
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gem "shoulda", ">= 0"
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gem "rdoc", "~> 3.12"
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gem "jeweler", "~>
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gem "jeweler", "~> 2.3"
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gem "bundler", ">= 1.0.21"
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gem "bio", ">= 1.4.2"
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end
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.2.
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1
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0.2.3
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data/bin/bio-tm_hmm
CHANGED
@@ -45,7 +45,6 @@ Bio::FlatFile.auto(ARGF).each do |seq|
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# Default output - a description of the TMDs for each input aaseq
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if options[:filter_in] == false and options[:filter_out] == false
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-
p result
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if result.has_domain?
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# At least one TMD found. Output each on a separate line
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result.transmembrane_domains.each do |tmd|
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data/bio-tm_hmm.gemspec
CHANGED
@@ -2,17 +2,19 @@
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# DO NOT EDIT THIS FILE DIRECTLY
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# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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# -*- encoding: utf-8 -*-
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# stub: bio-tm_hmm 0.2.3 ruby lib
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Gem::Specification.new do |s|
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s.name = "bio-tm_hmm"
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s.version = "0.2.
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s.name = "bio-tm_hmm".freeze
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s.version = "0.2.3"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.
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s.
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s.
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-
s.
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s.
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s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
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s.require_paths = ["lib".freeze]
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s.authors = ["Ben J. Woodcroft".freeze]
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s.date = "2017-04-06"
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s.description = "A bioruby plugin for interaction with the transmembrane predictor TMHMM".freeze
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s.email = "donttrustben@gmail.com".freeze
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s.executables = ["bio-tm_hmm".freeze]
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s.extra_rdoc_files = [
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"LICENSE.txt",
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"README.md"
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@@ -36,34 +38,36 @@ Gem::Specification.new do |s|
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"test/test_tm_hmm_wrapper.rb",
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"test/test_transmembrane.rb"
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]
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s.homepage = "http://github.com/wwood/bioruby-tm_hmm"
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s.licenses = ["MIT"]
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s.
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s.
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s.summary = "A bioruby plugin for interaction with the transmembrane predictor TMHMM"
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s.homepage = "http://github.com/wwood/bioruby-tm_hmm".freeze
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s.licenses = ["MIT".freeze]
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s.rubygems_version = "2.5.2".freeze
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s.summary = "A bioruby plugin for interaction with the transmembrane predictor TMHMM".freeze
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if s.respond_to? :specification_version then
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s.specification_version =
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s.specification_version = 4
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if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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s.
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s.
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s.add_development_dependency(%q<
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s.add_development_dependency(%q<
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s.add_development_dependency(%q<
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s.add_runtime_dependency(%q<bio>.freeze, [">= 1.4.2"])
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s.add_runtime_dependency(%q<test-unit>.freeze, ["~> 3.2"])
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s.add_development_dependency(%q<shoulda>.freeze, [">= 0"])
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s.add_development_dependency(%q<rdoc>.freeze, ["~> 3.12"])
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s.add_development_dependency(%q<jeweler>.freeze, ["~> 2.3"])
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s.add_development_dependency(%q<bundler>.freeze, [">= 1.0.21"])
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else
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<bio>.freeze, [">= 1.4.2"])
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s.add_dependency(%q<test-unit>.freeze, ["~> 3.2"])
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s.add_dependency(%q<shoulda>.freeze, [">= 0"])
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s.add_dependency(%q<rdoc>.freeze, ["~> 3.12"])
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s.add_dependency(%q<jeweler>.freeze, ["~> 2.3"])
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s.add_dependency(%q<bundler>.freeze, [">= 1.0.21"])
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end
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else
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<
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s.add_dependency(%q<bio>.freeze, [">= 1.4.2"])
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s.add_dependency(%q<test-unit>.freeze, ["~> 3.2"])
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s.add_dependency(%q<shoulda>.freeze, [">= 0"])
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s.add_dependency(%q<rdoc>.freeze, ["~> 3.12"])
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s.add_dependency(%q<jeweler>.freeze, ["~> 2.3"])
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s.add_dependency(%q<bundler>.freeze, [">= 1.0.21"])
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end
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end
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metadata
CHANGED
@@ -1,96 +1,99 @@
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--- !ruby/object:Gem::Specification
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name: bio-tm_hmm
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version: !ruby/object:Gem::Version
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version: 0.2.
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prerelease:
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version: 0.2.3
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platform: ruby
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authors:
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- Ben J. Woodcroft
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2017-04-06 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.4.2
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.4.2
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- !ruby/object:Gem::Dependency
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name: test-unit
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.2'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.2'
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- !ruby/object:Gem::Dependency
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name: shoulda
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- -
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- -
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: rdoc
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.12'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.12'
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- !ruby/object:Gem::Dependency
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name: jeweler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version:
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version: '2.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version:
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version: '2.3'
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- -
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- - ">="
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version: 1.0.21
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- -
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- - ">="
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version: 1.0.21
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- !ruby/object:Gem::Dependency
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name: bio
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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version: 1.4.2
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: 1.4.2
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description: A bioruby plugin for interaction with the transmembrane predictor TMHMM
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email: donttrustben@gmail.com
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executables:
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- LICENSE.txt
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- README.md
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files:
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- .document
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- .travis.yml
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- ".document"
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- ".travis.yml"
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- Gemfile
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- LICENSE.txt
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- README.md
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@@ -120,29 +123,25 @@ files:
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homepage: http://github.com/wwood/bioruby-tm_hmm
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licenses:
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- MIT
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metadata: {}
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- -
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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segments:
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- 0
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hash: 24340783
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- -
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- - ">="
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version:
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rubygems_version: 2.5.2
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signing_key:
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specification_version:
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specification_version: 4
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summary: A bioruby plugin for interaction with the transmembrane predictor TMHMM
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test_files: []
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