bio-svgenes 0.2.1 → 0.2.2

data/VERSION

@@ -1 +1 @@
-0.2.1
+0.2.2

data/bio-svgenes.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-svgenes"
-  s.version = "0.2.1"
+  s.version = "0.2.2"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Dan MacLean"]
-  s.date = "2012-12-04"
+  s.date = "2013-01-18"
   s.description = "This bio-gem facilitates the creation of pretty, publication quality SVG images from feature data."
   s.email = "maclean.daniel@gmail.com"
   s.extra_rdoc_files = [
@@ -54,7 +54,7 @@ Gem::Specification.new do |s|
   s.homepage = "http://github.com/danmaclean/bioruby-svgenes"
   s.licenses = ["MIT"]
   s.require_paths = ["lib"]
-  s.rubygems_version = "1.8.10"
+  s.rubygems_version = "1.8.11"
   s.summary = "Create pretty SVG-format images of features, gene models and data tracks"
 
   if s.respond_to? :specification_version then

data/examples/draw_from_json.rb

@@ -28,7 +28,6 @@ optparse.parse!
 
 
 
-
 require 'bio-svgenes'
 
 Bio::Graphics::Page.from_json(:json => options[:json], :outfile => options[:svg] )

data/lib/bio/graphics/page.rb

@@ -25,6 +25,7 @@ class Page
   def self.from_json(args)
     require 'rubygems'
     require 'json'
+    puts "memememe"
     data = JSON.parse(File.open(args[:json], 'r').read)
     p = Page.new(:width => data["Page"]["width"], 
                  :height => data["Page"]["height"], 
@@ -262,7 +263,7 @@ class Page
   end
   
   def write(file)
-    File.open(file, 'w').write(get_markup).close
+    File.open(file, 'w').write(get_markup)
   end
 end
 end

metadata

@@ -1,80 +1,108 @@
---- !ruby/object:Gem::Specification
+--- !ruby/object:Gem::Specification 
 name: bio-svgenes
-version: !ruby/object:Gem::Version
-  version: 0.2.1
+version: !ruby/object:Gem::Version 
+  hash: 19
   prerelease: 
+  segments: 
+  - 0
+  - 2
+  - 2
+  version: 0.2.2
 platform: ruby
-authors:
+authors: 
 - Dan MacLean
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-12-04 00:00:00.000000000 Z
-dependencies:
-- !ruby/object:Gem::Dependency
-  name: shoulda
-  requirement: &70110120233860 !ruby/object:Gem::Requirement
+
+date: 2013-01-18 00:00:00 Z
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
-        version: '0'
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  version_requirements: *id001
+  name: shoulda
+- !ruby/object:Gem::Dependency 
   type: :development
   prerelease: false
-  version_requirements: *70110120233860
-- !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: &70110120233360 !ruby/object:Gem::Requirement
+  requirement: &id002 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
+    requirements: 
     - - ~>
-      - !ruby/object:Gem::Version
+      - !ruby/object:Gem::Version 
+        hash: 23
+        segments: 
+        - 1
+        - 0
+        - 0
         version: 1.0.0
+  version_requirements: *id002
+  name: bundler
+- !ruby/object:Gem::Dependency 
   type: :development
   prerelease: false
-  version_requirements: *70110120233360
-- !ruby/object:Gem::Dependency
-  name: jeweler
-  requirement: &70110120232860 !ruby/object:Gem::Requirement
+  requirement: &id003 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
+    requirements: 
     - - ~>
-      - !ruby/object:Gem::Version
+      - !ruby/object:Gem::Version 
+        hash: 7
+        segments: 
+        - 1
+        - 6
+        - 4
         version: 1.6.4
+  version_requirements: *id003
+  name: jeweler
+- !ruby/object:Gem::Dependency 
   type: :development
   prerelease: false
-  version_requirements: *70110120232860
-- !ruby/object:Gem::Dependency
-  name: rcov
-  requirement: &70110120232320 !ruby/object:Gem::Requirement
+  requirement: &id004 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
-        version: '0'
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  version_requirements: *id004
+  name: rcov
+- !ruby/object:Gem::Dependency 
   type: :development
   prerelease: false
-  version_requirements: *70110120232320
-- !ruby/object:Gem::Dependency
-  name: bio
-  requirement: &70110120231820 !ruby/object:Gem::Requirement
+  requirement: &id005 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 1
+        - 4
+        - 2
         version: 1.4.2
-  type: :development
-  prerelease: false
-  version_requirements: *70110120231820
-description: This bio-gem facilitates the creation of pretty, publication quality
-  SVG images from feature data.
+  version_requirements: *id005
+  name: bio
+description: This bio-gem facilitates the creation of pretty, publication quality SVG images from feature data.
 email: maclean.daniel@gmail.com
 executables: []
+
 extensions: []
-extra_rdoc_files:
+
+extra_rdoc_files: 
 - LICENSE.txt
 - README.rdoc
-files:
+files: 
 - .DS_Store
 - .document
 - Gemfile
@@ -109,31 +137,37 @@ files:
 - test/helper.rb
 - test/test_bio-svgenes.rb
 homepage: http://github.com/danmaclean/bioruby-svgenes
-licenses:
+licenses: 
 - MIT
 post_install_message: 
 rdoc_options: []
-require_paths:
+
+require_paths: 
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement
+required_ruby_version: !ruby/object:Gem::Requirement 
   none: false
-  requirements:
-  - - ! '>='
-    - !ruby/object:Gem::Version
-      version: '0'
-      segments:
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
       - 0
-      hash: -3214761707146878159
-required_rubygems_version: !ruby/object:Gem::Requirement
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
   none: false
-  requirements:
-  - - ! '>='
-    - !ruby/object:Gem::Version
-      version: '0'
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
 requirements: []
+
 rubyforge_project: 
-rubygems_version: 1.8.10
+rubygems_version: 1.8.11
 signing_key: 
 specification_version: 3
 summary: Create pretty SVG-format images of features, gene models and data tracks
 test_files: []
+