bio-shell 0.0.0 → 1.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (6) hide show
  1. checksums.yaml +5 -5
  2. data/README.md +1 -1
  3. data/bio-shell.gemspec +2 -2
  4. data/lib/bio/shell/plugin/seq.rb +1 -1
  5. data/lib/bio/shell/version.rb +1 -1
  6. metadata +7 -7
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
- SHA1:
3
- metadata.gz: a00fbd14c9244b1c3bdde2a86815e7c0eae20db8
4
- data.tar.gz: 78252c99bcdf7551b90ff80fd5222fb0c6369ee0
2
+ SHA256:
3
+ metadata.gz: 8953cfae487192226cc9f607ae3496e445b7754a68b1173c5fbcf21173877360
4
+ data.tar.gz: 63c2370629cb25500d2345b667fda4c30d59d938bd265b20d5bc3815ee5b1eaf
5
5
  SHA512:
6
- metadata.gz: f9f48890aa062bceeb71948418e32c137f25595e17c21b440335546ff1b1ca2d9f07594ab9b8385952131a80d677522e2fed981716235f0196a4bf5aae1a6cf8
7
- data.tar.gz: f85f4804b5605247de07c4dcf992fbc0ef040144b3036d2dfbfc8edf0feded9220414c611f2cc572e96a6c500e0e9d606a647f8c69157761f68d060a22e7f3f4
6
+ metadata.gz: ce42f2c88144efbd0a580c0b979a28e7f40e2cb8465f0b858b4093e2835eb40aa8a64fed7d4ce3ffeeb19895a1084dfc4b8067525fa865d1177751ecc62aba66
7
+ data.tar.gz: c2ddd6e69e10ce1622138e78595fea3561090af90a2ee2730ffc6037ffc00ffbe31a8b20c49fc406e59e6ad5d6528b50c5421148079aea6059b56e1bad016d9c
data/README.md CHANGED
@@ -51,7 +51,7 @@ to [rubygems.org](https://rubygems.org).
51
51
  ## Contributing
52
52
 
53
53
  Bug reports and pull requests are welcome on GitHub at
54
- https://github.com/bioruby/bio-shell
54
+ https://github.com/bioruby/bioruby-shell
55
55
 
56
56
  ## Cite
57
57
 
data/bio-shell.gemspec CHANGED
@@ -10,7 +10,7 @@ Gem::Specification.new do |spec|
10
10
  spec.email = ["staff@bioruby.org"]
11
11
 
12
12
  spec.summary = %q{BioRuby Shell: interactive analysis environment for BioRuby}
13
- spec.description = %q{BioRuby Shell is a command-line based interacitve analysis enviroment for BioRuby open source bioinformatics library.}
13
+ spec.description = %q{BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.}
14
14
  spec.homepage = "https://github.com/bioruby/bioruby-shell"
15
15
 
16
16
  spec.files = `git ls-files -z`.split("\x0").reject do |f|
@@ -20,7 +20,7 @@ Gem::Specification.new do |spec|
20
20
  spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
21
21
  spec.require_paths = ["lib"]
22
22
 
23
- spec.add_runtime_dependency "bio", ">= 1.5.1"
23
+ spec.add_runtime_dependency "bio", ">= 2.0.0"
24
24
 
25
25
  spec.add_development_dependency "bundler", "~> 1.15"
26
26
  spec.add_development_dependency "rake", "~> 10.0"
data/lib/bio/shell/plugin/seq.rb CHANGED
@@ -82,7 +82,7 @@ module Bio::Shell
82
82
  rep << "Codon usage :\n"
83
83
  hash = Hash.new("0.0%")
84
84
  seq.codon_usage.sort.each do |codon, num|
85
- percent = format("%.1f%", 100.0 * num / (seq.length / 3))
85
+ percent = format("%.1f%%", 100.0 * num / (seq.length / 3))
86
86
  hash[codon] = percent
87
87
  end
88
88
  rep << codontable(1, hash).output
data/lib/bio/shell/version.rb CHANGED
@@ -1,5 +1,5 @@
1
1
  module Bio
2
2
  module Shell
3
- VERSION = "0.0.0".freeze
3
+ VERSION = "1.0.0".freeze
4
4
  end
5
5
  end
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bio-shell
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.0.0
4
+ version: 1.0.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - BioRuby project
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2017-09-15 00:00:00.000000000 Z
11
+ date: 2019-06-14 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: bio
@@ -16,14 +16,14 @@ dependencies:
16
16
  requirements:
17
17
  - - ">="
18
18
  - !ruby/object:Gem::Version
19
- version: 1.5.1
19
+ version: 2.0.0
20
20
  type: :runtime
21
21
  prerelease: false
22
22
  version_requirements: !ruby/object:Gem::Requirement
23
23
  requirements:
24
24
  - - ">="
25
25
  - !ruby/object:Gem::Version
26
- version: 1.5.1
26
+ version: 2.0.0
27
27
  - !ruby/object:Gem::Dependency
28
28
  name: bundler
29
29
  requirement: !ruby/object:Gem::Requirement
@@ -80,8 +80,8 @@ dependencies:
80
80
  - - "~>"
81
81
  - !ruby/object:Gem::Version
82
82
  version: '3'
83
- description: BioRuby Shell is a command-line based interacitve analysis enviroment
84
- for BioRuby open source bioinformatics library.
83
+ description: BioRuby Shell is a command line interface on BioRuby open source bioinformatics
84
+ library. It provides easy-to-use analysis environment for bioinformatics.
85
85
  email:
86
86
  - staff@bioruby.org
87
87
  executables:
@@ -158,7 +158,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
158
158
  version: '0'
159
159
  requirements: []
160
160
  rubyforge_project:
161
- rubygems_version: 2.6.11
161
+ rubygems_version: 2.7.6.2
162
162
  signing_key:
163
163
  specification_version: 4
164
164
  summary: 'BioRuby Shell: interactive analysis environment for BioRuby'