bio-shell 0.0.0 → 1.0.0

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Files changed (6) hide show
  1. checksums.yaml +5 -5
  2. data/README.md +1 -1
  3. data/bio-shell.gemspec +2 -2
  4. data/lib/bio/shell/plugin/seq.rb +1 -1
  5. data/lib/bio/shell/version.rb +1 -1
  6. metadata +7 -7
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  SHA512:
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data/README.md CHANGED
@@ -51,7 +51,7 @@ to [rubygems.org](https://rubygems.org).
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  ## Contributing
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  Bug reports and pull requests are welcome on GitHub at
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- https://github.com/bioruby/bio-shell
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+ https://github.com/bioruby/bioruby-shell
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  ## Cite
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data/bio-shell.gemspec CHANGED
@@ -10,7 +10,7 @@ Gem::Specification.new do |spec|
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  spec.email = ["staff@bioruby.org"]
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  spec.summary = %q{BioRuby Shell: interactive analysis environment for BioRuby}
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- spec.description = %q{BioRuby Shell is a command-line based interacitve analysis enviroment for BioRuby open source bioinformatics library.}
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+ spec.description = %q{BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.}
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  spec.homepage = "https://github.com/bioruby/bioruby-shell"
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  spec.files = `git ls-files -z`.split("\x0").reject do |f|
@@ -20,7 +20,7 @@ Gem::Specification.new do |spec|
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  spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
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  spec.require_paths = ["lib"]
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- spec.add_runtime_dependency "bio", ">= 1.5.1"
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+ spec.add_runtime_dependency "bio", ">= 2.0.0"
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  spec.add_development_dependency "bundler", "~> 1.15"
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  spec.add_development_dependency "rake", "~> 10.0"
data/lib/bio/shell/plugin/seq.rb CHANGED
@@ -82,7 +82,7 @@ module Bio::Shell
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  rep << "Codon usage :\n"
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  hash = Hash.new("0.0%")
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  seq.codon_usage.sort.each do |codon, num|
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- percent = format("%.1f%", 100.0 * num / (seq.length / 3))
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+ percent = format("%.1f%%", 100.0 * num / (seq.length / 3))
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  hash[codon] = percent
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  end
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  rep << codontable(1, hash).output
data/lib/bio/shell/version.rb CHANGED
@@ -1,5 +1,5 @@
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  module Bio
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  module Shell
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- VERSION = "0.0.0".freeze
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+ VERSION = "1.0.0".freeze
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: bio-shell
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  version: !ruby/object:Gem::Version
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- version: 0.0.0
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+ version: 1.0.0
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  platform: ruby
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  authors:
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  - BioRuby project
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2017-09-15 00:00:00.000000000 Z
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+ date: 2019-06-14 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bio
@@ -16,14 +16,14 @@ dependencies:
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: 1.5.1
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+ version: 2.0.0
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: 1.5.1
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+ version: 2.0.0
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  - !ruby/object:Gem::Dependency
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  name: bundler
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  requirement: !ruby/object:Gem::Requirement
@@ -80,8 +80,8 @@ dependencies:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '3'
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- description: BioRuby Shell is a command-line based interacitve analysis enviroment
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- for BioRuby open source bioinformatics library.
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+ description: BioRuby Shell is a command line interface on BioRuby open source bioinformatics
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+ library. It provides easy-to-use analysis environment for bioinformatics.
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  email:
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  - staff@bioruby.org
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  executables:
@@ -158,7 +158,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  version: '0'
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 2.6.11
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+ rubygems_version: 2.7.6.2
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  signing_key:
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  specification_version: 4
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  summary: 'BioRuby Shell: interactive analysis environment for BioRuby'