bio-samtools 0.5.0 → 0.5.1

data/VERSION

@@ -1 +1 @@
-0.5.0
+0.5.1

data/bio-samtools.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-samtools"
-  s.version = "0.5.0"
+  s.version = "0.5.1"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Ricardo Ramirez-Gonzalez", "Dan MacLean", "Raoul J.P. Bonnal"]
-  s.date = "2012-01-13"
+  s.date = "2012-02-17"
   s.description = "Binder of samtools for ruby, on the top of FFI. \n\n  This project was born from the need to add support of BAM files to \n  the gee_fu genome browser (http://github.com/danmaclean/gee_fu)."
   s.email = "ilpuccio.febo@gmail.com"
   s.extensions = ["ext/mkrf_conf.rb"]

data/lib/bio/db/sam.rb

@@ -538,10 +538,9 @@ module Bio
     class Tag
       attr_accessor :tag, :type, :value
       def set(str)
-        v = str.split(":")
-        @tag   = v[0]
-        @type  = v[1]
-        @value = v[2]
+        @tag   = str[0..1]
+        @type  = str[3]
+        @value = str[5..-1]
       end
     end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-samtools
 version: !ruby/object:Gem::Version
-  version: 0.5.0
+  version: 0.5.1
   prerelease: 
 platform: ruby
 authors:
@@ -11,11 +11,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-01-13 00:00:00.000000000 Z
+date: 2012-02-17 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2153534240 !ruby/object:Gem::Requirement
+  requirement: &2165171740 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2153534240
+  version_requirements: *2165171740
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2153533620 !ruby/object:Gem::Requirement
+  requirement: &2165171260 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
         version: 1.4.2
   type: :runtime
   prerelease: false
-  version_requirements: *2153533620
+  version_requirements: *2165171260
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &2153531760 !ruby/object:Gem::Requirement
+  requirement: &2165170760 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2153531760
+  version_requirements: *2165170760
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &2153529440 !ruby/object:Gem::Requirement
+  requirement: &2165170260 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -56,10 +56,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *2153529440
+  version_requirements: *2165170260
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &2153526840 !ruby/object:Gem::Requirement
+  requirement: &2165169660 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2153526840
+  version_requirements: *2165169660
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &2153524760 !ruby/object:Gem::Requirement
+  requirement: &2165169020 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2153524760
+  version_requirements: *2165169020
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2153522840 !ruby/object:Gem::Requirement
+  requirement: &2165193600 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
         version: 1.4.2
   type: :development
   prerelease: false
-  version_requirements: *2153522840
+  version_requirements: *2165193600
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2153483000 !ruby/object:Gem::Requirement
+  requirement: &2165193020 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -100,10 +100,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2153483000
+  version_requirements: *2165193020
 - !ruby/object:Gem::Dependency
   name: rdoc
-  requirement: &2153482380 !ruby/object:Gem::Requirement
+  requirement: &2165192540 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -111,7 +111,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2153482380
+  version_requirements: *2165192540
 description: ! "Binder of samtools for ruby, on the top of FFI. \n\n  This project
   was born from the need to add support of BAM files to \n  the gee_fu genome browser
   (http://github.com/danmaclean/gee_fu)."
@@ -310,7 +310,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 2724404510118255875
+      hash: 1379127832013866857
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: