bio-sambamba 0.0.4 → 0.0.5

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Files changed (5) hide show
  1. data/.travis.yml +8 -7
  2. data/Gemfile +9 -3
  3. data/README.md +1 -1
  4. data/VERSION +1 -1
  5. metadata +24 -13
data/.travis.yml CHANGED
@@ -2,11 +2,12 @@ language: ruby
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  rvm:
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  - 1.9.2
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  - 1.9.3
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- - jruby-19mode # JRuby in 1.9 mode
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- - rbx-19mode
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- # - 1.8.7
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- # - jruby-18mode # JRuby in 1.8 mode
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- # - rbx-18mode
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+ # - jruby-19mode -- the same problems as with BioRuby, related to popen3
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+ # - rbx-19mode -- msgpack extension doesn't work with Rubinius
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- # uncomment this line if your project needs to run something other than `rake`:
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- # script: bundle exec rspec spec
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+ jdk:
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+ - oraclejdk7
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+
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+ before_install:
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+ - wget https://github.com/downloads/lomereiter/sambamba/sambamba-0.2.6_i386.deb
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+ - sudo dpkg -i sambamba-0.2.6_i386.deb
data/Gemfile CHANGED
@@ -1,11 +1,17 @@
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  source "http://rubygems.org"
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- gem "bio", "~> 1.4.2"
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- gem "msgpack", "~> 0.4.7"
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+ gem "bio", ">= 1.4.2"
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+
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+ if defined?(JRUBY_VERSION)
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+ gem "msgpack-jruby", ">= 1.2.0"
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+ else
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+ gem "msgpack", ">= 0.4.7"
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+ end
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  group :development do
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+ gem "rake"
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  gem "bundler", "~> 1.1.4"
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  gem "jeweler", "~> 1.8.3"
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  gem "rspec", "~> 2.7.0"
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- gem "cucumber", "~> 1.2.0"
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+ gem "cucumber", ">= 0"
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  end
data/README.md CHANGED
@@ -14,7 +14,7 @@ Note: this software is under active development!
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  rake install
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  ```
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- In order to use the gem, you also need <code>sambamba</code> tool installed (version >= 0.2.4).
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+ In order to use the gem, you also need <code>sambamba</code> tool installed (version >= 0.2.6).
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  If you use Debian, you can download a package for your architecture from
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  [github downloads](http://github.com/lomereiter/sambamba/downloads).
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.0.4
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+ 0.0.5
metadata CHANGED
@@ -2,7 +2,7 @@
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  name: bio-sambamba
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  version: !ruby/object:Gem::Version
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  prerelease:
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- version: 0.0.4
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+ version: 0.0.5
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  platform: ruby
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  authors:
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  - Artem Tarasov
@@ -17,7 +17,7 @@ dependencies:
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  requirement: &id001 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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- - - ~>
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: 1.4.2
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  type: :runtime
@@ -28,56 +28,67 @@ dependencies:
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  requirement: &id002 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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- - - ~>
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: 0.4.7
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  type: :runtime
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  prerelease: false
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  version_requirements: *id002
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  - !ruby/object:Gem::Dependency
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- name: bundler
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+ name: rake
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  requirement: &id003 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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- - - ~>
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+ - - ">="
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  - !ruby/object:Gem::Version
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- version: 1.1.4
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+ version: "0"
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  type: :development
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  prerelease: false
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  version_requirements: *id003
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  - !ruby/object:Gem::Dependency
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- name: jeweler
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+ name: bundler
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  requirement: &id004 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
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- version: 1.8.3
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+ version: 1.1.4
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  type: :development
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  prerelease: false
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  version_requirements: *id004
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  - !ruby/object:Gem::Dependency
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- name: rspec
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+ name: jeweler
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  requirement: &id005 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
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- version: 2.7.0
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+ version: 1.8.3
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  type: :development
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  prerelease: false
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  version_requirements: *id005
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  - !ruby/object:Gem::Dependency
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- name: cucumber
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+ name: rspec
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  requirement: &id006 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
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  - !ruby/object:Gem::Version
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- version: 1.2.0
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+ version: 2.7.0
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  type: :development
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  prerelease: false
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  version_requirements: *id006
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+ - !ruby/object:Gem::Dependency
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+ name: cucumber
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+ requirement: &id007 !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
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+ type: :development
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+ prerelease: false
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+ version_requirements: *id007
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  description: New Sambamba library comes with a command-line tool for working with SAM/BAM files. This gem brings some of its functionality to Ruby.
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  email: lomereiter@gmail.com
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  executables: []
@@ -144,7 +155,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- hash: -3697473229949428622
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+ hash: -4515808283139857040
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  segments:
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  - 0
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  version: "0"