bio-rocker 1.5.1 → 1.5.2

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/rocker.rb

@@ -9,13 +9,13 @@ require 'rocker/rocdata'
 
 class ROCker
   #================================[ Class ]
-  @@VERSION = '1.5.1'
+  @@VERSION = '1.5.2'
+  @@DATE = '2019-08-14'
   @@CITATION = [
     'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
     'ROCker: accurate detection and quantification of target genes in',
     'short-read metagenomic data sets by modeling sliding-window bitscores.',
     'Nucleic Acids Research 45(3):e14.']
-  @@DATE = '2019-08-01'
   @@DEFAULTS = {
     # General
     q: false, r: 'R', nucl: false, debug: false, thr: 2, search: :blast,

data/lib/rocker/step/filter.rb

@@ -69,7 +69,7 @@ class ROCker
       return bs + (max_tri - extra_tri)
     else
       miss = [exp_readlen - readlen, max_corr * readlen].min
-      return bs + (bits_per_aa * miss * penalty)
+      return bs + (bits_per_aa * miss * (1.0 - penalty))
     end
   end
 end # ROCker

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-rocker
 version: !ruby/object:Gem::Version
-  version: 1.5.1
+  version: 1.5.2
 platform: ruby
 authors:
 - Luis (Coto) Orellana
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-08-01 00:00:00.000000000 Z
+date: 2019-08-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rest-client