bio-rocker 1.5.0 → 1.5.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rocker.rb +1 -1
- data/lib/rocker/step/filter.rb +3 -3
- metadata +2 -3
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 9849435fc7d9fa734b9b8f48bf447971b9ded6fd78d94f8a46b36331cb5bfddc
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data.tar.gz: f2ad06e4d064acfe21753d1b124d2db1a265dbae61e66ea4d0662f003ad5e14e
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4a060be08061b016001a8ae2ed0e03bebdb5631dde8304f0982ad16130b556567e87ee66062eeb3bb2d09204cb5fa514960f816fb6101756065292c0cd4587ef
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data.tar.gz: bf73472c186be5d174b7786ab9793b04bac4354bc04c5edd8cf3dcf8bd03ece3bc9010d6e4b32f7a339d88312536112f2884f299c9c754245a56bea3b3c9ead0
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data/lib/rocker.rb
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@@ -9,7 +9,7 @@ require 'rocker/rocdata'
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class ROCker
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#================================[ Class ]
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@@VERSION = '1.5.
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@@VERSION = '1.5.1'
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@@CITATION = [
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'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
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'ROCker: accurate detection and quantification of target genes in',
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data/lib/rocker/step/filter.rb
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@@ -62,14 +62,14 @@ class ROCker
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return bs if @o[:lencorr].nil? or readlen.nil? or readlen >= exp_readlen
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bits_per_aa = bs.to_f / readlen
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if penalty.nil? or penalty > 1.0
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miss = [exp_readlen - readlen, max_corr * readlen].min
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return bs + (bits_per_aa * miss * penalty)
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else
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extra = [0.0, readlen * (max_corr + 1.0) - exp_readlen].max
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max_tri = max_corr * readlen * bits_per_aa / 2
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tanTheta = max_corr > 0.0 ? bits_per_aa / (max_corr * readlen) : 0.0
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extra_tri = extra * extra * tanTheta / 2
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return bs + (max_tri - extra_tri)
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else
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miss = [exp_readlen - readlen, max_corr * readlen].min
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return bs + (bits_per_aa * miss * penalty)
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end
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end
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end # ROCker
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metadata
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: bio-rocker
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version: !ruby/object:Gem::Version
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version: 1.5.
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version: 1.5.1
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platform: ruby
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authors:
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- Luis (Coto) Orellana
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@@ -81,8 +81,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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-
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rubygems_version: 2.7.6
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rubygems_version: 3.0.3
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signing_key:
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specification_version: 4
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summary: ROCker
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