bio-rocker 1.5.0 → 1.5.1
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- checksums.yaml +4 -4
- data/lib/rocker.rb +1 -1
- data/lib/rocker/step/filter.rb +3 -3
- metadata +2 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 9849435fc7d9fa734b9b8f48bf447971b9ded6fd78d94f8a46b36331cb5bfddc
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4
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+
data.tar.gz: f2ad06e4d064acfe21753d1b124d2db1a265dbae61e66ea4d0662f003ad5e14e
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 4a060be08061b016001a8ae2ed0e03bebdb5631dde8304f0982ad16130b556567e87ee66062eeb3bb2d09204cb5fa514960f816fb6101756065292c0cd4587ef
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7
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+
data.tar.gz: bf73472c186be5d174b7786ab9793b04bac4354bc04c5edd8cf3dcf8bd03ece3bc9010d6e4b32f7a339d88312536112f2884f299c9c754245a56bea3b3c9ead0
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data/lib/rocker.rb
CHANGED
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@@ -9,7 +9,7 @@ require 'rocker/rocdata'
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9
9
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10
10
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class ROCker
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11
11
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#================================[ Class ]
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12
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-
@@VERSION = '1.5.
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12
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+
@@VERSION = '1.5.1'
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13
13
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@@CITATION = [
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14
14
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'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
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15
15
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'ROCker: accurate detection and quantification of target genes in',
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data/lib/rocker/step/filter.rb
CHANGED
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@@ -62,14 +62,14 @@ class ROCker
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62
62
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return bs if @o[:lencorr].nil? or readlen.nil? or readlen >= exp_readlen
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63
63
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bits_per_aa = bs.to_f / readlen
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64
64
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if penalty.nil? or penalty > 1.0
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65
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-
miss = [exp_readlen - readlen, max_corr * readlen].min
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66
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-
return bs + (bits_per_aa * miss * penalty)
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67
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-
else
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68
65
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extra = [0.0, readlen * (max_corr + 1.0) - exp_readlen].max
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69
66
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max_tri = max_corr * readlen * bits_per_aa / 2
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70
67
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tanTheta = max_corr > 0.0 ? bits_per_aa / (max_corr * readlen) : 0.0
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71
68
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extra_tri = extra * extra * tanTheta / 2
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72
69
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return bs + (max_tri - extra_tri)
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70
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+
else
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71
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+
miss = [exp_readlen - readlen, max_corr * readlen].min
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72
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+
return bs + (bits_per_aa * miss * penalty)
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73
73
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end
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74
74
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end
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75
75
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end # ROCker
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bio-rocker
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 1.5.
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4
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+
version: 1.5.1
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Luis (Coto) Orellana
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@@ -81,8 +81,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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81
81
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- !ruby/object:Gem::Version
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82
82
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version: '0'
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83
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requirements: []
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84
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-
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85
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-
rubygems_version: 2.7.6
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84
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+
rubygems_version: 3.0.3
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86
85
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signing_key:
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87
86
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specification_version: 4
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88
87
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summary: ROCker
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