bio-polyploid-tools 0.8.7 → 0.8.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -5
- data/VERSION +1 -1
- data/bio-polyploid-tools.gemspec +5 -4
- data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
- metadata +4 -3
checksums.yaml
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---
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metadata.gz:
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data.tar.gz:
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SHA1:
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metadata.gz: b98553fa53cce305003462d095b3327d5fe6a4e8
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data.tar.gz: 54a35758a75bfdda5b273263a9ea83b59e22f0e6
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: c34087c86bacba08816ca113e7ebadd396d8f6fcc26fc1cc9224f69f1d5896a3e75cc680c6934d8f43d9c735f48ce305b77bfd9e509a993e7342ce63ac2f6438
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data.tar.gz: 37f133ee490484fb946f759a4fd6b3bce3967f36d56c1cece5a530d15261d2ff204933fce9d6b114c24688f308e09b7c1ea031fc8832fb49a40f16ab21044d2b
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data/VERSION
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@@ -1 +1 @@
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0.8.
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0.8.8
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data/bio-polyploid-tools.gemspec
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# DO NOT EDIT THIS FILE DIRECTLY
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# Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
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# -*- encoding: utf-8 -*-
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# stub: bio-polyploid-tools 0.8.
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# stub: bio-polyploid-tools 0.8.8 ruby lib
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Gem::Specification.new do |s|
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s.name = "bio-polyploid-tools".freeze
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s.version = "0.8.
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s.version = "0.8.8"
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s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
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s.require_paths = ["lib".freeze]
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s.authors = ["Ricardo H. Ramirez-Gonzalez".freeze]
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s.date = "2018-08-
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s.date = "2018-08-10"
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s.description = "Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat".freeze
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s.email = "ricardo.ramirez-gonzalez@jic.ac.uk".freeze
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s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "find_homoeologue_variations.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze]
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"test/data/bfr_out_test.csv",
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"test/data/chr1A_G540414846C/chr1A_G540414846C.csv",
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"test/data/chr1A_G540414846C/chr1A_G540414846C.fa",
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"test/data/chr1A_T517634750C/chr1A_T517634750C.csv",
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"test/data/chr4D_C14473543T/chr4D_C14473543T.csv",
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"test/data/chr4D_C14473543T/chr4D_C14473543T.fa",
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"test/data/headerMergeed.txt",
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@@ -179,7 +180,7 @@ Gem::Specification.new do |s|
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]
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s.homepage = "http://github.com/tgac/bioruby-polyploid-tools".freeze
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s.licenses = ["MIT".freeze]
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s.rubygems_version = "2.
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s.rubygems_version = "2.6.14".freeze
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s.summary = "Tool to work with polyploids, NGS and molecular biology".freeze
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if s.respond_to? :specification_version then
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chr1A_T517634750C,1A,aaaacggacaacggggaaaatgctcgaatgcatgagacgaacacgtatgcaatgcacatgatgacatgatatgagatgcatggcaacgacaacaacacat[T/C]gagacaaaaacccgaacccgagaaaataaaataacttaacgccgaaaacggcaagagttagattacatattagataaatcatatccggggtgttacaccc
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metadata
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--- !ruby/object:Gem::Specification
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name: bio-polyploid-tools
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version: !ruby/object:Gem::Version
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version: 0.8.
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version: 0.8.8
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platform: ruby
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authors:
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- Ricardo H. Ramirez-Gonzalez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-08-
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date: 2018-08-10 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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- test/data/bfr_out_test.csv
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- test/data/chr1A_G540414846C/chr1A_G540414846C.csv
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- test/data/chr1A_G540414846C/chr1A_G540414846C.fa
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- test/data/chr1A_T517634750C/chr1A_T517634750C.csv
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- test/data/chr4D_C14473543T/chr4D_C14473543T.csv
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- test/data/chr4D_C14473543T/chr4D_C14473543T.fa
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- test/data/headerMergeed.txt
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.
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rubygems_version: 2.6.14
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signing_key:
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specification_version: 4
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summary: Tool to work with polyploids, NGS and molecular biology
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