bio-polymarker_db_batch 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio-polymarker_db_batch/polymarker_db_batch.rb +8 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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|
3
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+
metadata.gz: f9b3076efa36fc6b89b3d296a559156e380d7f35
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4
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+
data.tar.gz: 283bc9eca6cecc30ac54526f89484fad503dd247
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5
5
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SHA512:
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6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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|
6
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+
metadata.gz: 2c5c9eb69c6e1af6dca1eda3e52939dfb4f2bc0ecf8bf299cd5ce9896296944333be8ee115c942bc87b4aa1c5949676113ef9a588f5491eeedd574ffa53d44b3
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|
7
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+
data.tar.gz: 2da006400b5791ac677f384f33d0f84ee1404d9c8878516762dcacfc8359862519ae285cd9d51c1ebe9d65be4d56de3434d125e3ed7d73935132ecd453efb506
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.2.
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1
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+
0.2.1
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@@ -10,6 +10,11 @@ class Bio::DB::Polymarker
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|
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10
10
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def mysql_version
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11
11
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con.get_server_info
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|
12
12
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end
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13
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+
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14
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+
def get_snp_file(id)
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15
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+
results = con.query "SELECT * FROM snp_file WHERE snp_file_id=#{id}"
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16
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+
results.fetch_hash
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|
17
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+
end
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13
18
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14
19
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def each_to_run
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15
20
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query="SELECT snp_file_id, filename FROM snp_file WHERE status = 'NEW';"
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@@ -66,11 +71,13 @@ class Bio::DB::Polymarker
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66
71
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67
72
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def update_status(snp_file_id, new_status)
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68
73
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raise "Invalid status #{new_status}" unless ["NEW", "SUBMITTED", "RUNNING", "DONE", "ERROR"].include?(new_status)
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74
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+
snp_file = get_snp_file(snp_file_id)
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75
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+
return if snp_file['status'] == new_status
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69
76
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pst = con.prepare "UPDATE snp_file SET status = ? WHERE snp_file_id = ?"
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70
77
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pst.execute new_status, snp_file_id
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71
78
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con.commit
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72
79
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begin
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73
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-
send_email(
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80
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+
send_email(snp_file['email'],id, status)
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74
81
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rescue
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|
75
82
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puts "Error sending email."
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76
83
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end
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