bio-polymarker_db_batch 0.2.0 → 0.2.1

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data/VERSION CHANGED
@@ -1 +1 @@
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- 0.2.0
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+ 0.2.1
@@ -10,6 +10,11 @@ class Bio::DB::Polymarker
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  def mysql_version
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  con.get_server_info
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  end
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+
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+ def get_snp_file(id)
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+ results = con.query "SELECT * FROM snp_file WHERE snp_file_id=#{id}"
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+ results.fetch_hash
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+ end
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  def each_to_run
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  query="SELECT snp_file_id, filename FROM snp_file WHERE status = 'NEW';"
@@ -66,11 +71,13 @@ class Bio::DB::Polymarker
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  def update_status(snp_file_id, new_status)
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  raise "Invalid status #{new_status}" unless ["NEW", "SUBMITTED", "RUNNING", "DONE", "ERROR"].include?(new_status)
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+ snp_file = get_snp_file(snp_file_id)
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+ return if snp_file['status'] == new_status
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  pst = con.prepare "UPDATE snp_file SET status = ? WHERE snp_file_id = ?"
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  pst.execute new_status, snp_file_id
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  con.commit
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  begin
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- send_email(to,id, status)
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+ send_email(snp_file['email'],id, status)
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  rescue
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  puts "Error sending email."
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: bio-polymarker_db_batch
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  version: !ruby/object:Gem::Version
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- version: 0.2.0
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+ version: 0.2.1
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  platform: ruby
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  authors:
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  - Ricardo H. Ramirez-Gonzalez